Strain Fitness in Pantoea sp. MT58 around IAI47_06225

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,265,589	+		IAI47_06220	0.27	+1.1
1,265,590	-		IAI47_06220	0.27	+0.4
1,265,684	+		IAI47_06220	0.34	+1.2
1,265,684	+		IAI47_06220	0.34	+1.3
1,265,684	+		IAI47_06220	0.34	+0.7
1,265,684	+		IAI47_06220	0.34	+0.7
1,265,685	-		IAI47_06220	0.34	+0.5
1,265,685	-		IAI47_06220	0.34	+0.9
1,265,848	+		IAI47_06220	0.46	+0.3
1,265,848	+		IAI47_06220	0.46	-0.9
1,265,849	-		IAI47_06220	0.46	+1.1
1,265,849	-		IAI47_06220	0.46	+1.7
1,265,849	-		IAI47_06220	0.46	-1.2
1,265,903	+		IAI47_06220	0.50	-1.3
1,265,903	+		IAI47_06220	0.50	-0.1
1,265,904	-		IAI47_06220	0.50	+1.1
1,265,904	-		IAI47_06220	0.50	+0.9
1,266,094	+		IAI47_06220	0.63	-0.2
1,266,094	+		IAI47_06220	0.63	+0.5
1,266,094	+		IAI47_06220	0.63	+1.9
1,266,095	-		IAI47_06220	0.63	+1.7
1,266,098	+		IAI47_06220	0.64	+0.8
1,266,112	+		IAI47_06220	0.65	+0.6
1,266,112	+		IAI47_06220	0.65	+1.9
1,266,112	+		IAI47_06220	0.65	-0.2
1,266,112	+		IAI47_06220	0.65	+0.1
1,266,113	-		IAI47_06220	0.65	+0.4
1,266,129	-		IAI47_06220	0.66	+0.9
1,266,129	-		IAI47_06220	0.66	+0.3
1,266,149	+		IAI47_06220	0.67	-0.2
1,266,150	-		IAI47_06220	0.67	+1.7
1,266,150	-		IAI47_06220	0.67	+1.8
1,266,200	+		IAI47_06220	0.71	+0.5
1,266,201	-		IAI47_06220	0.71	-0.9
1,266,201	-		IAI47_06220	0.71	+0.8
1,266,243	+		IAI47_06220	0.74	+2.0
1,266,244	-		IAI47_06220	0.74	-1.1
1,266,261	+		IAI47_06220	0.75	+2.5
1,266,261	+		IAI47_06220	0.75	+0.3
1,266,261	+		IAI47_06220	0.75	-0.1
1,266,261	+		IAI47_06220	0.75	+0.9
1,266,261	+		IAI47_06220	0.75	+2.2
1,266,261	+		IAI47_06220	0.75	+2.7
1,266,262	-		IAI47_06220	0.75	+0.0
1,266,262	-		IAI47_06220	0.75	+0.2
1,266,262	-		IAI47_06220	0.75	-1.6
1,266,262	-		IAI47_06220	0.75	+2.1
1,266,262	-		IAI47_06220	0.75	-0.6
1,266,262	-		IAI47_06220	0.75	+2.7
1,266,262	-		IAI47_06220	0.75	-1.2
1,266,262	-		IAI47_06220	0.75	+0.1
1,266,262	-		IAI47_06220	0.75	-0.8
1,266,262	-		IAI47_06220	0.75	-1.6
1,266,262	-		IAI47_06220	0.75	-0.7
1,266,262	-		IAI47_06220	0.75	-0.8
1,266,263	+		IAI47_06220	0.76	+1.2
1,266,263	+		IAI47_06220	0.76	+0.9
1,266,263	+		IAI47_06220	0.76	+1.8
1,266,263	+		IAI47_06220	0.76	-0.5
1,266,263	+		IAI47_06220	0.76	-1.7
1,266,263	+		IAI47_06220	0.76	+0.4
1,266,263	+		IAI47_06220	0.76	+0.5
1,266,263	+		IAI47_06220	0.76	-1.0
1,266,263	+		IAI47_06220	0.76	-2.3
1,266,263	+		IAI47_06220	0.76	-0.2
1,266,263	+		IAI47_06220	0.76	+0.3
1,266,263	+		IAI47_06220	0.76	+0.5
1,266,263	+		IAI47_06220	0.76	-0.2
1,266,263	+		IAI47_06220	0.76	+0.7
1,266,263	+		IAI47_06220	0.76	+1.3
1,266,263	+		IAI47_06220	0.76	-0.2
1,266,263	+		IAI47_06220	0.76	+1.6
1,266,263	+		IAI47_06220	0.76	+0.3
1,266,264	-		IAI47_06220	0.76	+2.1
1,266,264	-		IAI47_06220	0.76	+1.0
1,266,264	-		IAI47_06220	0.76	+1.5
1,266,264	-		IAI47_06220	0.76	+0.7
1,266,264	-		IAI47_06220	0.76	-2.4
1,266,264	-		IAI47_06220	0.76	+0.8
1,266,264	-		IAI47_06220	0.76	+1.2
1,266,264	-		IAI47_06220	0.76	+1.5
1,266,264	-		IAI47_06220	0.76	-0.3
1,266,264	-		IAI47_06220	0.76	-0.3
1,266,264	-		IAI47_06220	0.76	+0.3
1,266,264	-		IAI47_06220	0.76	-1.3
1,266,264	-		IAI47_06220	0.76	+2.0
1,266,264	-		IAI47_06220	0.76	-0.5
1,266,264	-		IAI47_06220	0.76	+1.2
1,266,264	-		IAI47_06220	0.76	-1.1
1,266,264	-		IAI47_06220	0.76	-0.4
1,266,264	-		IAI47_06220	0.76	+1.4
1,266,318	-		IAI47_06220	0.79	-0.3
1,266,323	+		IAI47_06220	0.80	+0.6
1,266,326	+		IAI47_06220	0.80	+1.9
1,266,327	-		IAI47_06220	0.80	-0.7
1,266,327	-		IAI47_06220	0.80	-0.7
1,266,327	-		IAI47_06220	0.80	+3.7
1,266,330	+		IAI47_06220	0.80	-0.3
1,266,330	+		IAI47_06220	0.80	-2.1
1,266,331	-		IAI47_06220	0.80	-1.1
1,266,331	-		IAI47_06220	0.80	+0.9
1,266,506	+				+0.2
1,266,506	+				-0.3
1,266,507	-				-0.8
1,266,507	-				+0.7
1,266,610	-				+0.4
1,266,628	-				-0.2
1,266,686	+		IAI47_06225	0.11	+2.2
1,266,686	+		IAI47_06225	0.11	-0.5
1,266,687	-		IAI47_06225	0.12	+1.1
1,266,687	-		IAI47_06225	0.12	-0.3
1,266,687	-		IAI47_06225	0.12	+1.4
1,266,687	-		IAI47_06225	0.12	+1.4
1,266,711	+		IAI47_06225	0.14	-0.3
1,266,736	+		IAI47_06225	0.17	+1.1
1,266,737	-		IAI47_06225	0.17	-1.3
1,266,737	-		IAI47_06225	0.17	-0.6
1,266,753	+		IAI47_06225	0.19	-0.3
1,266,753	+		IAI47_06225	0.19	+0.2
1,266,754	-		IAI47_06225	0.19	-0.2
1,266,759	+		IAI47_06225	0.20	+0.8
1,266,759	+		IAI47_06225	0.20	-1.2
1,266,759	+		IAI47_06225	0.20	-2.6
1,266,760	-		IAI47_06225	0.20	+2.7
1,266,760	-		IAI47_06225	0.20	-1.9
1,266,858	+		IAI47_06225	0.31	+1.3
1,266,858	+		IAI47_06225	0.31	-0.9
1,266,858	+		IAI47_06225	0.31	+0.1
1,266,859	-		IAI47_06225	0.31	-0.3
1,266,859	-		IAI47_06225	0.31	-1.1
1,266,859	-		IAI47_06225	0.31	-1.9
1,266,859	-		IAI47_06225	0.31	-0.3
1,266,867	+		IAI47_06225	0.32	-1.5
1,266,868	-		IAI47_06225	0.32	+0.7
1,266,923	-		IAI47_06225	0.38	+2.1
1,266,935	+		IAI47_06225	0.39	-1.8
1,266,935	+		IAI47_06225	0.39	+2.2
1,266,935	+		IAI47_06225	0.39	+0.3
1,266,935	+		IAI47_06225	0.39	+0.3
1,266,935	+		IAI47_06225	0.39	+2.3
1,266,935	+		IAI47_06225	0.39	-0.1
1,266,935	+		IAI47_06225	0.39	-1.2
1,266,936	-		IAI47_06225	0.39	-0.3
1,266,936	-		IAI47_06225	0.39	+0.9
1,266,951	+		IAI47_06225	0.41	+0.2
1,266,951	+		IAI47_06225	0.41	+0.9
1,266,952	-		IAI47_06225	0.41	+0.6
1,266,952	-		IAI47_06225	0.41	+0.2
1,266,989	+		IAI47_06225	0.45	-1.4
1,266,989	+		IAI47_06225	0.45	+0.5
1,266,990	-		IAI47_06225	0.45	+1.1
1,266,990	-		IAI47_06225	0.45	+1.2
1,266,990	-		IAI47_06225	0.45	+1.3
1,266,998	+		IAI47_06225	0.46	-0.5
1,266,998	+		IAI47_06225	0.46	-1.4
1,266,999	-		IAI47_06225	0.46	+0.8
1,266,999	-		IAI47_06225	0.46	+1.9
1,266,999	-		IAI47_06225	0.46	+0.2
1,267,087	+		IAI47_06225	0.56	+2.1
1,267,110	+		IAI47_06225	0.59	+0.1
1,267,110	+		IAI47_06225	0.59	+2.0
1,267,111	-		IAI47_06225	0.59	+0.2
1,267,111	-		IAI47_06225	0.59	+0.6
1,267,111	-		IAI47_06225	0.59	+2.3
1,267,111	-		IAI47_06225	0.59	+0.1
1,267,125	+		IAI47_06225	0.60	+0.8
1,267,235	+		IAI47_06225	0.72	-0.8
1,267,238	+		IAI47_06225	0.73	-0.6
1,267,238	+		IAI47_06225	0.73	+0.8
1,267,238	+		IAI47_06225	0.73	-0.3
1,267,253	+		IAI47_06225	0.74	-0.6
1,267,253	+		IAI47_06225	0.74	+1.1
1,267,254	-		IAI47_06225	0.75	+1.2
1,267,254	-		IAI47_06225	0.75	+0.9
1,267,254	-		IAI47_06225	0.75	-1.1
1,267,281	+		IAI47_06225	0.78	-0.1
1,267,281	+		IAI47_06225	0.78	-0.0
1,267,281	+		IAI47_06225	0.78	+1.0
1,267,281	+		IAI47_06225	0.78	-2.1
1,267,309	-		IAI47_06225	0.81	-1.9
1,267,360	+		IAI47_06225	0.86	-0.7
1,267,361	-		IAI47_06225	0.86	-3.5
1,267,379	+		IAI47_06225	0.88	+0.2
1,267,380	-		IAI47_06225	0.89	+0.1
1,267,450	+				+1.4
1,267,450	+				-1.7
1,267,450	+				+0.7
1,267,450	+				-0.5
1,267,451	-				-1.1
1,267,451	-				+1.0
1,267,451	-				+0.3
1,267,451	-				-1.7
1,267,469	+				+0.5
1,267,493	+				+1.2
1,267,493	+				-1.1
1,267,493	+				-0.4
1,267,493	+				-1.9
1,267,493	+				-1.0
1,267,493	+				+0.4
1,267,493	+				+3.2
1,267,493	+				-0.8
1,267,494	-				-1.3
1,267,494	-				-0.3
1,267,494	-				+2.7
1,267,494	-				-0.9
1,267,494	-				-1.0
1,267,494	-				-0.9
1,267,494	-				+3.5
1,267,494	-				-0.6
1,267,494	-				-0.0
1,267,495	+				+1.7
1,267,495	+				-0.7
1,267,495	+				+0.9
1,267,495	+				+0.4
1,267,495	+				+1.6
1,267,495	+				+1.3
1,267,495	+				-1.2
1,267,495	+				+0.2
1,267,495	+				+0.3
1,267,495	+				+1.9
1,267,495	+				-2.2
1,267,495	+				-1.1
1,267,495	+				+0.0
1,267,496	-				+1.9
1,267,496	-				-1.0
1,267,496	-				+0.1
1,267,496	-				-1.3
1,267,496	-				+0.7
1,267,496	-				+1.5
1,267,496	-				-1.7
1,267,496	-				-1.0
1,267,496	-				+3.2
1,267,496	-				+0.4
1,267,496	-				-0.9
1,267,496	-				-0.0
1,267,496	-				-0.5
1,267,499	+				-0.3
1,267,499	+				-1.0
1,267,499	+				-0.3
1,267,499	+				+0.0
1,267,499	+				+0.5
1,267,499	+				-0.7
1,267,500	-				-1.6
1,267,500	-				+0.1
1,267,500	-				+0.8
1,267,500	-				-0.9
1,267,500	-				-1.4
1,267,500	-				-1.7
1,267,500	-				-1.0
1,267,500	-				-2.3
1,267,500	-				+1.0
1,267,501	+				+0.2
1,267,501	+				-0.1
1,267,501	+				+1.7
1,267,501	+				+1.1
1,267,501	+				-2.3
1,267,502	-				-0.3
1,267,505	+				+3.0
1,267,505	+				+0.9
1,267,505	+				-0.6
1,267,505	+				-2.5
1,267,505	+				+0.3
1,267,506	-				-0.4
1,267,520	+				+0.5
1,267,520	+				-0.1
1,267,521	-				+1.7
1,267,521	-				-0.5
1,267,521	-				-0.6
1,267,548	+				-0.1
1,267,548	+				+0.5
1,267,548	+				+0.1
1,267,548	+				+0.4
1,267,549	-				-0.2
1,267,549	-				+0.1
1,267,562	+				+0.1
1,267,593	-				+0.4
1,267,593	-				-1.8
1,267,617	+		IAI47_06230	0.20	-0.1
1,267,617	+		IAI47_06230	0.20	-2.0
1,267,617	+		IAI47_06230	0.20	+0.7
1,267,617	+		IAI47_06230	0.20	+0.9
1,267,617	+		IAI47_06230	0.20	-1.8
1,267,617	+		IAI47_06230	0.20	+2.4
1,267,617	+		IAI47_06230	0.20	-0.7
1,267,618	-		IAI47_06230	0.20	-1.2
1,267,618	-		IAI47_06230	0.20	-2.1
1,267,618	-		IAI47_06230	0.20	-0.3
1,267,618	-		IAI47_06230	0.20	+1.9
1,267,618	-		IAI47_06230	0.20	-0.4
1,267,717	-		IAI47_06230	0.64	-0.9
1,267,717	-		IAI47_06230	0.64	+0.1
1,267,797	+				-1.3
1,267,831	+				+0.5
1,267,831	+				+2.6
1,267,831	+				-0.4
1,267,831	+				+1.0
1,267,878	+				-0.7
1,267,885	+				+1.2
1,267,899	-				+0.5
1,267,899	-				+0.7
1,268,067	+		IAI47_06235	0.19	-1.4
1,268,067	+		IAI47_06235	0.19	-0.1
1,268,124	+		IAI47_06235	0.24	-0.2
1,268,125	-		IAI47_06235	0.24	-1.0
1,268,125	-		IAI47_06235	0.24	-0.9
1,268,361	+		IAI47_06235	0.45	+0.5
1,268,361	+		IAI47_06235	0.45	-1.2
1,268,361	+		IAI47_06235	0.45	-0.3
1,268,361	+		IAI47_06235	0.45	-1.5
1,268,362	-		IAI47_06235	0.45	+0.4
1,268,388	+		IAI47_06235	0.47	+1.1
1,268,402	-		IAI47_06235	0.48	-0.3
1,268,403	+		IAI47_06235	0.48	+0.8
1,268,403	+		IAI47_06235	0.48	+0.7