Strain Fitness in Pantoea sp. MT58 around IAI47_06020

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,227,524	+		IAI47_06015	0.18	-1.9
1,227,524	+		IAI47_06015	0.18	+1.3
1,227,524	+		IAI47_06015	0.18	-0.0
1,227,524	+		IAI47_06015	0.18	+0.4
1,227,524	+		IAI47_06015	0.18	-1.8
1,227,525	-		IAI47_06015	0.18	+0.3
1,227,525	-		IAI47_06015	0.18	-1.8
1,227,525	-		IAI47_06015	0.18	-0.3
1,227,525	-		IAI47_06015	0.18	+0.3
1,227,525	-		IAI47_06015	0.18	-2.2
1,227,525	-		IAI47_06015	0.18	+2.3
1,227,525	-		IAI47_06015	0.18	-0.7
1,227,566	-		IAI47_06015	0.21	+0.2
1,227,592	+		IAI47_06015	0.24	+1.8
1,227,592	+		IAI47_06015	0.24	-0.7
1,227,592	+		IAI47_06015	0.24	-0.1
1,227,592	+		IAI47_06015	0.24	+1.9
1,227,593	-		IAI47_06015	0.24	-1.1
1,227,598	+		IAI47_06015	0.24	-2.0
1,227,598	+		IAI47_06015	0.24	+0.9
1,227,599	-		IAI47_06015	0.24	+1.2
1,227,599	-		IAI47_06015	0.24	+1.1
1,227,599	-		IAI47_06015	0.24	-1.7
1,227,611	-		IAI47_06015	0.25	-0.9
1,227,611	-		IAI47_06015	0.25	+0.0
1,227,616	+		IAI47_06015	0.26	-0.6
1,227,617	-		IAI47_06015	0.26	+0.4
1,227,617	-		IAI47_06015	0.26	-0.4
1,227,628	+		IAI47_06015	0.27	-1.4
1,227,628	+		IAI47_06015	0.27	-0.1
1,227,629	-		IAI47_06015	0.27	-0.8
1,227,629	-		IAI47_06015	0.27	+0.5
1,227,629	-		IAI47_06015	0.27	+0.7
1,227,661	+		IAI47_06015	0.29	-0.8
1,227,662	-		IAI47_06015	0.29	+1.3
1,227,662	-		IAI47_06015	0.29	+0.7
1,227,662	-		IAI47_06015	0.29	-1.8
1,227,672	+		IAI47_06015	0.30	-1.1
1,227,714	+		IAI47_06015	0.34	+1.3
1,227,714	+		IAI47_06015	0.34	+0.8
1,227,714	+		IAI47_06015	0.34	-0.3
1,227,714	+		IAI47_06015	0.34	-1.0
1,227,714	+		IAI47_06015	0.34	+3.2
1,227,715	-		IAI47_06015	0.34	-0.6
1,227,715	-		IAI47_06015	0.34	+0.3
1,227,715	-		IAI47_06015	0.34	+1.6
1,227,718	+		IAI47_06015	0.34	-3.1
1,227,718	+		IAI47_06015	0.34	+0.4
1,227,719	-		IAI47_06015	0.34	-0.3
1,227,751	+		IAI47_06015	0.37	-0.1
1,227,751	+		IAI47_06015	0.37	+1.5
1,227,752	-		IAI47_06015	0.37	+1.0
1,227,752	-		IAI47_06015	0.37	+0.1
1,227,761	-		IAI47_06015	0.38	-0.7
1,227,834	+		IAI47_06015	0.44	-0.1
1,227,858	+		IAI47_06015	0.46	-0.7
1,227,858	+		IAI47_06015	0.46	-0.3
1,227,859	-		IAI47_06015	0.46	-1.6
1,227,859	-		IAI47_06015	0.46	+0.3
1,227,895	+		IAI47_06015	0.49	+0.8
1,227,895	+		IAI47_06015	0.49	-0.5
1,227,895	+		IAI47_06015	0.49	-0.8
1,227,896	-		IAI47_06015	0.49	+0.5
1,227,975	+		IAI47_06015	0.56	-0.1
1,227,990	+		IAI47_06015	0.57	+1.2
1,227,991	-		IAI47_06015	0.57	+0.8
1,227,991	-		IAI47_06015	0.57	+0.3
1,227,991	-		IAI47_06015	0.57	-0.0
1,227,991	-		IAI47_06015	0.57	+0.0
1,227,991	-		IAI47_06015	0.57	+1.4
1,227,992	+		IAI47_06015	0.57	+0.4
1,227,992	+		IAI47_06015	0.57	-3.3
1,227,993	-		IAI47_06015	0.57	-1.0
1,228,004	-		IAI47_06015	0.58	+0.4
1,228,014	+		IAI47_06015	0.59	-0.0
1,228,146	+		IAI47_06015	0.70	-1.5
1,228,153	+		IAI47_06015	0.70	-0.4
1,228,153	+		IAI47_06015	0.70	+0.3
1,228,157	+		IAI47_06015	0.71	-0.9
1,228,157	+		IAI47_06015	0.71	-1.4
1,228,158	-		IAI47_06015	0.71	-0.5
1,228,158	-		IAI47_06015	0.71	+0.2
1,228,158	-		IAI47_06015	0.71	-1.0
1,228,159	-		IAI47_06015	0.71	+0.7
1,228,176	+		IAI47_06015	0.72	-1.1
1,228,176	+		IAI47_06015	0.72	+0.1
1,228,176	+		IAI47_06015	0.72	-0.5
1,228,176	+		IAI47_06015	0.72	-0.1
1,228,176	+		IAI47_06015	0.72	+0.2
1,228,176	+		IAI47_06015	0.72	-0.0
1,228,177	-		IAI47_06015	0.72	-0.2
1,228,177	-		IAI47_06015	0.72	-0.7
1,228,177	-		IAI47_06015	0.72	-0.3
1,228,177	-		IAI47_06015	0.72	+0.2
1,228,177	-		IAI47_06015	0.72	+0.1
1,228,177	-		IAI47_06015	0.72	-1.0
1,228,177	-		IAI47_06015	0.72	+0.6
1,228,177	-		IAI47_06015	0.72	+1.4
1,228,177	-		IAI47_06015	0.72	-0.3
1,228,206	+		IAI47_06015	0.75	-0.1
1,228,206	+		IAI47_06015	0.75	+0.3
1,228,206	+		IAI47_06015	0.75	-0.8
1,228,207	-		IAI47_06015	0.75	-0.2
1,228,207	-		IAI47_06015	0.75	+0.8
1,228,207	-		IAI47_06015	0.75	-0.4
1,228,207	-		IAI47_06015	0.75	+0.4
1,228,208	+		IAI47_06015	0.75	+0.2
1,228,208	+		IAI47_06015	0.75	+0.6
1,228,208	+		IAI47_06015	0.75	-1.2
1,228,208	+		IAI47_06015	0.75	-1.0
1,228,208	+		IAI47_06015	0.75	-1.4
1,228,208	+		IAI47_06015	0.75	-1.9
1,228,208	+		IAI47_06015	0.75	-0.7
1,228,208	+		IAI47_06015	0.75	-1.0
1,228,208	+		IAI47_06015	0.75	-1.5
1,228,209	-		IAI47_06015	0.75	-0.9
1,228,209	-		IAI47_06015	0.75	-1.4
1,228,209	-		IAI47_06015	0.75	-1.6
1,228,209	-		IAI47_06015	0.75	+0.2
1,228,209	-		IAI47_06015	0.75	-0.6
1,228,209	-		IAI47_06015	0.75	+0.5
1,228,209	-		IAI47_06015	0.75	-0.5
1,228,209	-		IAI47_06015	0.75	+2.1
1,228,209	-		IAI47_06015	0.75	-0.0
1,228,209	-		IAI47_06015	0.75	+1.0
1,228,209	-		IAI47_06015	0.75	-0.9
1,228,209	-		IAI47_06015	0.75	-0.8
1,228,209	-		IAI47_06015	0.75	+2.0
1,228,209	-		IAI47_06015	0.75	-0.2
1,228,218	+		IAI47_06015	0.76	+1.7
1,228,219	-		IAI47_06015	0.76	-0.7
1,228,266	+		IAI47_06015	0.80	+3.5
1,228,267	-		IAI47_06015	0.80	-0.9
1,228,267	-		IAI47_06015	0.80	-0.0
1,228,267	-		IAI47_06015	0.80	+1.9
1,228,286	+		IAI47_06015	0.81	-0.4
1,228,292	-		IAI47_06015	0.82	-0.4
1,228,292	-		IAI47_06015	0.82	+0.7
1,228,323	+		IAI47_06015	0.85	-1.2
1,228,324	-		IAI47_06015	0.85	+0.9
1,228,334	+		IAI47_06015	0.85	-0.6
1,228,334	+		IAI47_06015	0.85	+1.9
1,228,334	+		IAI47_06015	0.85	-0.5
1,228,335	-		IAI47_06015	0.86	-1.2
1,228,335	-		IAI47_06015	0.86	+1.6
1,228,335	-		IAI47_06015	0.86	-1.6
1,228,379	+		IAI47_06015	0.89	-0.2
1,228,379	+		IAI47_06015	0.89	-2.0
1,228,379	+		IAI47_06015	0.89	+1.1
1,228,379	+		IAI47_06015	0.89	+0.3
1,228,379	+		IAI47_06015	0.89	+0.8
1,228,380	-		IAI47_06015	0.89	-1.7
1,228,382	+		IAI47_06015	0.90	-1.7
1,228,382	+		IAI47_06015	0.90	+1.2
1,228,382	+		IAI47_06015	0.90	-0.2
1,228,383	-		IAI47_06015	0.90	+0.4
1,228,388	-				-2.0
1,228,446	+				-0.8
1,228,480	+				-1.8
1,228,480	+				+1.4
1,228,480	+				-1.3
1,228,480	+				+0.1
1,228,480	+				-1.9
1,228,481	-				+2.3
1,228,481	-				+0.6
1,228,481	-				+0.9
1,228,481	-				+0.5
1,228,481	-				-1.1
1,228,481	-				-0.7
1,228,481	-				+2.7
1,228,481	-				+1.2
1,228,481	-				+2.5
1,228,481	-				+0.7
1,228,483	+				-1.0
1,228,484	-				-1.7
1,228,513	+				-2.1
1,228,513	+				+0.2
1,228,514	-				+2.1
1,228,514	-				+0.2
1,228,514	-				-0.2
1,228,514	-				+1.3
1,228,524	+				-0.5
1,228,524	+				+2.1
1,228,524	+				-0.8
1,228,524	+				+1.5
1,228,524	+				-0.1
1,228,525	-				+0.3
1,228,525	-				-0.4
1,228,525	-				+0.9
1,228,525	-				-0.0
1,228,527	+				+1.1
1,228,528	-				-1.8
1,228,528	-				+0.3
1,228,528	-				+0.2
1,228,534	+				-1.3
1,228,534	+				+2.9
1,228,534	+				-0.2
1,228,535	-				-0.0
1,228,535	-				+0.6
1,228,535	-				+2.3
1,228,535	-				+1.2
1,228,535	-				-0.6
1,228,560	-				-0.5
1,228,560	-				-0.0
1,228,590	+		IAI47_06020	0.13	-0.4
1,228,591	-		IAI47_06020	0.13	+1.5
1,228,591	-		IAI47_06020	0.13	+0.8
1,228,591	-		IAI47_06020	0.13	-1.3
1,228,602	+		IAI47_06020	0.14	-1.0
1,228,602	+		IAI47_06020	0.14	-0.6
1,228,603	-		IAI47_06020	0.15	+0.3
1,228,603	-		IAI47_06020	0.15	+3.0
1,228,603	-		IAI47_06020	0.15	+1.4
1,228,603	-		IAI47_06020	0.15	-0.9
1,228,711	-		IAI47_06020	0.30	-0.7
1,228,723	+		IAI47_06020	0.32	-1.5
1,228,724	-		IAI47_06020	0.32	+0.4
1,228,724	-		IAI47_06020	0.32	-0.2
1,228,724	-		IAI47_06020	0.32	-0.0
1,228,724	-		IAI47_06020	0.32	+0.4
1,228,724	-		IAI47_06020	0.32	+0.7
1,228,724	-		IAI47_06020	0.32	-0.0
1,228,738	-		IAI47_06020	0.34	-0.4
1,228,748	+		IAI47_06020	0.36	-1.2
1,228,749	-		IAI47_06020	0.36	-0.0
1,228,749	-		IAI47_06020	0.36	+1.2
1,228,780	+		IAI47_06020	0.41	-0.3
1,228,780	+		IAI47_06020	0.41	+0.0
1,228,780	+		IAI47_06020	0.41	-1.2
1,228,822	+		IAI47_06020	0.47	-0.5
1,228,822	+		IAI47_06020	0.47	-1.3
1,228,822	+		IAI47_06020	0.47	-2.6
1,228,823	-		IAI47_06020	0.47	-0.1
1,228,823	-		IAI47_06020	0.47	+0.1
1,228,823	-		IAI47_06020	0.47	+0.5
1,228,823	-		IAI47_06020	0.47	-0.8
1,228,823	-		IAI47_06020	0.47	+0.8
1,228,832	+		IAI47_06020	0.48	-0.4
1,228,833	-		IAI47_06020	0.48	-0.4
1,228,848	-		IAI47_06020	0.51	-1.4
1,228,848	-		IAI47_06020	0.51	+0.4
1,228,848	-		IAI47_06020	0.51	-0.6
1,228,937	+		IAI47_06020	0.64	+0.3
1,228,937	+		IAI47_06020	0.64	-0.4
1,228,938	-		IAI47_06020	0.64	-0.1
1,228,938	-		IAI47_06020	0.64	+0.2
1,228,938	-		IAI47_06020	0.64	+1.3
1,228,938	-		IAI47_06020	0.64	-0.7
1,228,938	-		IAI47_06020	0.64	-0.1
1,228,964	+		IAI47_06020	0.68	-0.3
1,228,970	+		IAI47_06020	0.68	-1.4
1,228,970	+		IAI47_06020	0.68	-0.5
1,228,971	-		IAI47_06020	0.69	-0.5
1,228,971	-		IAI47_06020	0.69	-0.2
1,229,021	+		IAI47_06020	0.76	+0.7
1,229,022	-		IAI47_06020	0.76	+0.9
1,229,022	-		IAI47_06020	0.76	-0.2
1,229,022	-		IAI47_06020	0.76	-0.7
1,229,033	-		IAI47_06020	0.78	-1.3
1,229,033	-		IAI47_06020	0.78	-1.8
1,229,033	-		IAI47_06020	0.78	+0.0
1,229,043	-		IAI47_06020	0.79	-0.5
1,229,043	-		IAI47_06020	0.79	+2.2
1,229,057	+		IAI47_06020	0.81	+1.4
1,229,057	+		IAI47_06020	0.81	+0.3
1,229,057	+		IAI47_06020	0.81	-0.5
1,229,057	+		IAI47_06020	0.81	-1.0
1,229,058	-		IAI47_06020	0.81	+1.2
1,229,058	-		IAI47_06020	0.81	+1.0
1,229,058	-		IAI47_06020	0.81	-1.2
1,229,058	-		IAI47_06020	0.81	-0.3
1,229,058	-		IAI47_06020	0.81	-0.7
1,229,090	+		IAI47_06020	0.86	-0.6
1,229,091	-		IAI47_06020	0.86	-1.6
1,229,102	+		IAI47_06020	0.88	+0.5
1,229,140	+				-0.8
1,229,140	+				+1.0
1,229,141	-				-0.7
1,229,141	-				-0.7
1,229,141	-				+2.5
1,229,141	-				-0.5
1,229,142	+				-2.6
1,229,142	+				-0.7
1,229,174	+				-0.5
1,229,175	-				-0.1
1,229,175	-				-0.7
1,229,182	+				+0.5
1,229,183	-				+1.1
1,229,183	-				-0.7
1,229,190	-				-0.5
1,229,190	-				-2.4
1,229,190	-				+3.6
1,229,236	+				-0.7
1,229,250	+				+1.2
1,229,250	+				-1.6
1,229,250	+				-0.1
1,229,250	+				+2.5
1,229,311	+		IAI47_06025	0.14	-2.1
1,229,311	+		IAI47_06025	0.14	+3.8
1,229,312	-		IAI47_06025	0.14	+0.7
1,229,315	+		IAI47_06025	0.14	-1.1
1,229,315	+		IAI47_06025	0.14	-0.9
1,229,338	+		IAI47_06025	0.17	+0.8
1,229,338	+		IAI47_06025	0.17	-0.6
1,229,338	+		IAI47_06025	0.17	-0.4
1,229,339	-		IAI47_06025	0.17	-0.7
1,229,339	-		IAI47_06025	0.17	-1.0
1,229,339	-		IAI47_06025	0.17	+1.5
1,229,339	-		IAI47_06025	0.17	-2.5
1,229,339	-		IAI47_06025	0.17	+1.3
1,229,339	-		IAI47_06025	0.17	-2.0
1,229,350	+		IAI47_06025	0.18	-0.8
1,229,350	+		IAI47_06025	0.18	-0.1
1,229,350	+		IAI47_06025	0.18	+0.5
1,229,351	-		IAI47_06025	0.18	-0.1
1,229,351	-		IAI47_06025	0.18	-0.4
1,229,351	-		IAI47_06025	0.18	-0.9
1,229,382	-		IAI47_06025	0.22	-1.3
1,229,382	-		IAI47_06025	0.22	-1.3
1,229,405	+		IAI47_06025	0.24	+0.8
1,229,405	+		IAI47_06025	0.24	-0.3
1,229,405	+		IAI47_06025	0.24	-0.8
1,229,405	+		IAI47_06025	0.24	-0.5
1,229,405	+		IAI47_06025	0.24	+1.6
1,229,414	+		IAI47_06025	0.25	-1.2
1,229,415	-		IAI47_06025	0.25	+0.9
1,229,420	-		IAI47_06025	0.26	+0.3
1,229,420	-		IAI47_06025	0.26	-0.7
1,229,467	+		IAI47_06025	0.31	-0.1
1,229,467	+		IAI47_06025	0.31	+0.9
1,229,468	-		IAI47_06025	0.31	+0.2
1,229,502	+		IAI47_06025	0.35	-0.8
1,229,502	+		IAI47_06025	0.35	-0.6
1,229,502	+		IAI47_06025	0.35	+0.9
1,229,502	+		IAI47_06025	0.35	+0.7
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