Strain Fitness in Pantoea sp. MT58 around IAI47_04705

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04700 and IAI47_04705 overlap by 4 nucleotidesIAI47_04705 and IAI47_04710 are separated by 22 nucleotidesIAI47_04710 and IAI47_04715 are separated by 162 nucleotides IAI47_04700: IAI47_04700 - hypothetical protein, at 991,915 to 992,857 _04700 IAI47_04705: IAI47_04705 - hypothetical protein, at 992,854 to 993,126 _04705 IAI47_04710: IAI47_04710 - hypothetical protein, at 993,149 to 993,475 _04710 IAI47_04715: IAI47_04715 - integrase, at 993,638 to 994,327 _04715 Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 991.877 kb on - strandat 991.893 kb on - strandat 991.893 kb on - strandat 991.897 kb on + strandat 991.897 kb on + strandat 991.897 kb on + strandat 991.897 kb on + strandat 991.898 kb on - strandat 991.898 kb on - strandat 991.899 kb on + strandat 991.899 kb on + strandat 991.900 kb on - strandat 991.900 kb on - strandat 991.910 kb on - strandat 991.924 kb on - strandat 991.937 kb on + strandat 991.937 kb on + strandat 991.937 kb on + strandat 991.937 kb on + strandat 991.938 kb on - strandat 991.955 kb on + strandat 991.955 kb on + strandat 991.956 kb on - strandat 991.966 kb on - strandat 991.982 kb on + strandat 991.982 kb on + strandat 991.983 kb on - strandat 991.994 kb on + strandat 991.994 kb on + strandat 991.994 kb on + strandat 991.995 kb on - strandat 992.013 kb on + strand, within IAI47_04700at 992.014 kb on - strand, within IAI47_04700at 992.033 kb on + strand, within IAI47_04700at 992.034 kb on - strand, within IAI47_04700at 992.034 kb on - strand, within IAI47_04700at 992.034 kb on - strand, within IAI47_04700at 992.040 kb on + strand, within IAI47_04700at 992.040 kb on + strand, within IAI47_04700at 992.040 kb on + strand, within IAI47_04700at 992.041 kb on - strand, within IAI47_04700at 992.105 kb on + strand, within IAI47_04700at 992.105 kb on + strand, within IAI47_04700at 992.121 kb on - strand, within IAI47_04700at 992.130 kb on - strand, within IAI47_04700at 992.135 kb on + strand, within IAI47_04700at 992.203 kb on - strand, within IAI47_04700at 992.229 kb on + strand, within IAI47_04700at 992.238 kb on - strand, within IAI47_04700at 992.258 kb on + strand, within IAI47_04700at 992.266 kb on - strand, within IAI47_04700at 992.266 kb on - strand, within IAI47_04700at 992.268 kb on + strand, within IAI47_04700at 992.268 kb on + strand, within IAI47_04700at 992.268 kb on + strand, within IAI47_04700at 992.269 kb on - strand, within IAI47_04700at 992.269 kb on - strand, within IAI47_04700at 992.269 kb on - strand, within IAI47_04700at 992.269 kb on - strand, within IAI47_04700at 992.269 kb on - strand, within IAI47_04700at 992.307 kb on + strand, within IAI47_04700at 992.307 kb on + strand, within IAI47_04700at 992.307 kb on + strand, within IAI47_04700at 992.307 kb on + strand, within IAI47_04700at 992.313 kb on + strand, within IAI47_04700at 992.313 kb on + strand, within IAI47_04700at 992.313 kb on + strand, within IAI47_04700at 992.313 kb on + strand, within IAI47_04700at 992.313 kb on + strand, within IAI47_04700at 992.313 kb on + strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.314 kb on - strand, within IAI47_04700at 992.333 kb on + strand, within IAI47_04700at 992.347 kb on + strand, within IAI47_04700at 992.347 kb on + strand, within IAI47_04700at 992.347 kb on + strand, within IAI47_04700at 992.348 kb on - strand, within IAI47_04700at 992.348 kb on - strand, within IAI47_04700at 992.401 kb on + strand, within IAI47_04700at 992.402 kb on - strand, within IAI47_04700at 992.409 kb on + strand, within IAI47_04700at 992.409 kb on + strand, within IAI47_04700at 992.409 kb on + strand, within IAI47_04700at 992.409 kb on + strand, within IAI47_04700at 992.409 kb on + strand, within IAI47_04700at 992.430 kb on + strand, within IAI47_04700at 992.430 kb on + strand, within IAI47_04700at 992.430 kb on + strand, within IAI47_04700at 992.471 kb on - strand, within IAI47_04700at 992.476 kb on + strand, within IAI47_04700at 992.476 kb on + strand, within IAI47_04700at 992.476 kb on + strand, within IAI47_04700at 992.476 kb on + strand, within IAI47_04700at 992.477 kb on - strand, within IAI47_04700at 992.487 kb on + strand, within IAI47_04700at 992.487 kb on + strand, within IAI47_04700at 992.487 kb on + strand, within IAI47_04700at 992.487 kb on + strand, within IAI47_04700at 992.487 kb on + strand, within IAI47_04700at 992.488 kb on - strand, within IAI47_04700at 992.488 kb on - strand, within IAI47_04700at 992.488 kb on - strand, within IAI47_04700at 992.488 kb on - strand, within IAI47_04700at 992.488 kb on - strand, within IAI47_04700at 992.490 kb on + strand, within IAI47_04700at 992.491 kb on - strand, within IAI47_04700at 992.491 kb on - strand, within IAI47_04700at 992.521 kb on - strand, within IAI47_04700at 992.544 kb on + strand, within IAI47_04700at 992.557 kb on + strand, within IAI47_04700at 992.558 kb on - strand, within IAI47_04700at 992.558 kb on - strand, within IAI47_04700at 992.558 kb on - strand, within IAI47_04700at 992.558 kb on - strand, within IAI47_04700at 992.600 kb on + strand, within IAI47_04700at 992.631 kb on - strand, within IAI47_04700at 992.640 kb on - strand, within IAI47_04700at 992.644 kb on + strand, within IAI47_04700at 992.765 kb on - strandat 992.829 kb on - strandat 992.829 kb on - strandat 992.829 kb on - strandat 992.831 kb on - strandat 992.869 kb on - strandat 993.053 kb on - strand, within IAI47_04705at 993.054 kb on + strand, within IAI47_04705at 993.057 kb on - strand, within IAI47_04705at 993.256 kb on - strand, within IAI47_04710at 993.260 kb on + strand, within IAI47_04710at 993.295 kb on - strand, within IAI47_04710at 993.316 kb on + strand, within IAI47_04710at 993.320 kb on + strand, within IAI47_04710at 993.321 kb on - strand, within IAI47_04710at 993.321 kb on - strand, within IAI47_04710at 993.323 kb on + strand, within IAI47_04710at 993.323 kb on + strand, within IAI47_04710at 993.323 kb on + strand, within IAI47_04710at 993.324 kb on - strand, within IAI47_04710at 993.327 kb on - strand, within IAI47_04710at 993.375 kb on + strand, within IAI47_04710at 993.489 kb on + strandat 993.522 kb on - strandat 993.534 kb on - strandat 993.586 kb on + strandat 993.587 kb on - strandat 993.587 kb on - strandat 993.595 kb on - strandat 993.619 kb on - strandat 993.671 kb on + strandat 993.671 kb on + strandat 993.672 kb on - strandat 993.721 kb on + strand, within IAI47_04715at 993.754 kb on + strand, within IAI47_04715at 993.755 kb on - strand, within IAI47_04715at 993.755 kb on - strand, within IAI47_04715at 993.755 kb on - strand, within IAI47_04715at 993.758 kb on + strand, within IAI47_04715at 993.759 kb on - strand, within IAI47_04715at 993.759 kb on - strand, within IAI47_04715at 993.791 kb on - strand, within IAI47_04715at 993.884 kb on + strand, within IAI47_04715at 993.884 kb on + strand, within IAI47_04715at 993.885 kb on - strand, within IAI47_04715at 993.885 kb on - strand, within IAI47_04715at 993.885 kb on - strand, within IAI47_04715at 993.906 kb on - strand, within IAI47_04715at 993.906 kb on - strand, within IAI47_04715at 993.906 kb on - strand, within IAI47_04715at 993.906 kb on - strand, within IAI47_04715at 993.927 kb on - strand, within IAI47_04715at 993.927 kb on - strand, within IAI47_04715at 993.933 kb on + strand, within IAI47_04715at 993.934 kb on - strand, within IAI47_04715at 993.934 kb on - strand, within IAI47_04715at 993.934 kb on - strand, within IAI47_04715at 993.945 kb on + strand, within IAI47_04715at 993.998 kb on - strand, within IAI47_04715at 994.024 kb on - strand, within IAI47_04715at 994.046 kb on + strand, within IAI47_04715at 994.047 kb on - strand, within IAI47_04715at 994.087 kb on + strand, within IAI47_04715at 994.087 kb on + strand, within IAI47_04715at 994.088 kb on - strand, within IAI47_04715at 994.088 kb on - strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.106 kb on + strand, within IAI47_04715at 994.107 kb on - strand, within IAI47_04715at 994.107 kb on - strand, within IAI47_04715at 994.107 kb on - strand, within IAI47_04715at 994.119 kb on + strand, within IAI47_04715at 994.119 kb on + strand, within IAI47_04715at 994.119 kb on + strand, within IAI47_04715at 994.119 kb on + strand, within IAI47_04715at 994.120 kb on - strand, within IAI47_04715at 994.121 kb on + strand, within IAI47_04715at 994.121 kb on + strand, within IAI47_04715at 994.121 kb on + strand, within IAI47_04715at 994.121 kb on + strand, within IAI47_04715at 994.122 kb on - strand, within IAI47_04715at 994.122 kb on - strand, within IAI47_04715at 994.122 kb on - strand, within IAI47_04715at 994.122 kb on - strand, within IAI47_04715at 994.126 kb on + strand, within IAI47_04715at 994.126 kb on + strand, within IAI47_04715at 994.126 kb on + strand, within IAI47_04715at 994.126 kb on + strand, within IAI47_04715at 994.126 kb on + strand, within IAI47_04715at 994.126 kb on + strand, within IAI47_04715

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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991,877 - +2.4
991,893 - -0.2
991,893 - -0.8
991,897 + -1.1
991,897 + +1.1
991,897 + +0.1
991,897 + -0.1
991,898 - +0.7
991,898 - +2.1
991,899 + -0.4
991,899 + +0.5
991,900 - +1.4
991,900 - +0.5
991,910 - +1.3
991,924 - -1.2
991,937 + +1.0
991,937 + -0.5
991,937 + -0.8
991,937 + -0.3
991,938 - +0.1
991,955 + +0.4
991,955 + +1.0
991,956 - +0.7
991,966 - +1.0
991,982 + -0.3
991,982 + +0.1
991,983 - -1.2
991,994 + -1.7
991,994 + +2.4
991,994 + +0.2
991,995 - -0.0
992,013 + IAI47_04700 0.10 +0.2
992,014 - IAI47_04700 0.10 +0.1
992,033 + IAI47_04700 0.13 +0.4
992,034 - IAI47_04700 0.13 -0.8
992,034 - IAI47_04700 0.13 +0.2
992,034 - IAI47_04700 0.13 +2.1
992,040 + IAI47_04700 0.13 +1.1
992,040 + IAI47_04700 0.13 +0.0
992,040 + IAI47_04700 0.13 +0.5
992,041 - IAI47_04700 0.13 +2.3
992,105 + IAI47_04700 0.20 -0.8
992,105 + IAI47_04700 0.20 -0.5
992,121 - IAI47_04700 0.22 -0.3
992,130 - IAI47_04700 0.23 +1.4
992,135 + IAI47_04700 0.23 -1.5
992,203 - IAI47_04700 0.31 -2.6
992,229 + IAI47_04700 0.33 +0.5
992,238 - IAI47_04700 0.34 +1.3
992,258 + IAI47_04700 0.36 +0.4
992,266 - IAI47_04700 0.37 -0.0
992,266 - IAI47_04700 0.37 -0.8
992,268 + IAI47_04700 0.37 -1.7
992,268 + IAI47_04700 0.37 +1.5
992,268 + IAI47_04700 0.37 -0.1
992,269 - IAI47_04700 0.38 -0.3
992,269 - IAI47_04700 0.38 -1.8
992,269 - IAI47_04700 0.38 +1.6
992,269 - IAI47_04700 0.38 +1.2
992,269 - IAI47_04700 0.38 -0.3
992,307 + IAI47_04700 0.42 +1.0
992,307 + IAI47_04700 0.42 -0.2
992,307 + IAI47_04700 0.42 -0.2
992,307 + IAI47_04700 0.42 -1.0
992,313 + IAI47_04700 0.42 +1.3
992,313 + IAI47_04700 0.42 -1.3
992,313 + IAI47_04700 0.42 +0.5
992,313 + IAI47_04700 0.42 +1.5
992,313 + IAI47_04700 0.42 -1.3
992,313 + IAI47_04700 0.42 -0.4
992,314 - IAI47_04700 0.42 -0.2
992,314 - IAI47_04700 0.42 -0.5
992,314 - IAI47_04700 0.42 -1.6
992,314 - IAI47_04700 0.42 -2.0
992,314 - IAI47_04700 0.42 +0.3
992,314 - IAI47_04700 0.42 -0.6
992,314 - IAI47_04700 0.42 +0.2
992,333 + IAI47_04700 0.44 +0.7
992,347 + IAI47_04700 0.46 +2.1
992,347 + IAI47_04700 0.46 +1.4
992,347 + IAI47_04700 0.46 +1.5
992,348 - IAI47_04700 0.46 +1.5
992,348 - IAI47_04700 0.46 -0.3
992,401 + IAI47_04700 0.52 +0.5
992,402 - IAI47_04700 0.52 -1.1
992,409 + IAI47_04700 0.52 -0.9
992,409 + IAI47_04700 0.52 -0.5
992,409 + IAI47_04700 0.52 -1.8
992,409 + IAI47_04700 0.52 +1.0
992,409 + IAI47_04700 0.52 +1.6
992,430 + IAI47_04700 0.55 +0.6
992,430 + IAI47_04700 0.55 -0.4
992,430 + IAI47_04700 0.55 -2.1
992,471 - IAI47_04700 0.59 -0.5
992,476 + IAI47_04700 0.59 +1.2
992,476 + IAI47_04700 0.59 +0.9
992,476 + IAI47_04700 0.59 -0.0
992,476 + IAI47_04700 0.59 +1.1
992,477 - IAI47_04700 0.60 -0.9
992,487 + IAI47_04700 0.61 -1.4
992,487 + IAI47_04700 0.61 -1.5
992,487 + IAI47_04700 0.61 +0.9
992,487 + IAI47_04700 0.61 -0.7
992,487 + IAI47_04700 0.61 +0.5
992,488 - IAI47_04700 0.61 -1.7
992,488 - IAI47_04700 0.61 +1.1
992,488 - IAI47_04700 0.61 -0.5
992,488 - IAI47_04700 0.61 -0.8
992,488 - IAI47_04700 0.61 +0.2
992,490 + IAI47_04700 0.61 +3.8
992,491 - IAI47_04700 0.61 +2.4
992,491 - IAI47_04700 0.61 +0.6
992,521 - IAI47_04700 0.64 -0.5
992,544 + IAI47_04700 0.67 +0.4
992,557 + IAI47_04700 0.68 -1.7
992,558 - IAI47_04700 0.68 +2.3
992,558 - IAI47_04700 0.68 +1.1
992,558 - IAI47_04700 0.68 -1.2
992,558 - IAI47_04700 0.68 +1.2
992,600 + IAI47_04700 0.73 -0.7
992,631 - IAI47_04700 0.76 -1.8
992,640 - IAI47_04700 0.77 -0.9
992,644 + IAI47_04700 0.77 -2.6
992,765 - -1.2
992,829 - -1.3
992,829 - -1.4
992,829 - -2.0
992,831 - -0.3
992,869 - +0.5
993,053 - IAI47_04705 0.73 -1.4
993,054 + IAI47_04705 0.73 +0.2
993,057 - IAI47_04705 0.74 +0.2
993,256 - IAI47_04710 0.33 -2.3
993,260 + IAI47_04710 0.34 +0.5
993,295 - IAI47_04710 0.45 +0.2
993,316 + IAI47_04710 0.51 +0.7
993,320 + IAI47_04710 0.52 +1.4
993,321 - IAI47_04710 0.53 -0.6
993,321 - IAI47_04710 0.53 +2.0
993,323 + IAI47_04710 0.53 -2.4
993,323 + IAI47_04710 0.53 -0.0
993,323 + IAI47_04710 0.53 -0.4
993,324 - IAI47_04710 0.54 +0.5
993,327 - IAI47_04710 0.54 +1.2
993,375 + IAI47_04710 0.69 +0.2
993,489 + +0.7
993,522 - -0.1
993,534 - +0.1
993,586 + +1.1
993,587 - +0.4
993,587 - +1.5
993,595 - +0.7
993,619 - -0.3
993,671 + -0.5
993,671 + -0.5
993,672 - -0.1
993,721 + IAI47_04715 0.12 -2.4
993,754 + IAI47_04715 0.17 -1.6
993,755 - IAI47_04715 0.17 +0.5
993,755 - IAI47_04715 0.17 +0.0
993,755 - IAI47_04715 0.17 -0.3
993,758 + IAI47_04715 0.17 -0.5
993,759 - IAI47_04715 0.18 -0.4
993,759 - IAI47_04715 0.18 -2.2
993,791 - IAI47_04715 0.22 +0.4
993,884 + IAI47_04715 0.36 -0.7
993,884 + IAI47_04715 0.36 +0.0
993,885 - IAI47_04715 0.36 -0.5
993,885 - IAI47_04715 0.36 -1.3
993,885 - IAI47_04715 0.36 -0.9
993,906 - IAI47_04715 0.39 +1.1
993,906 - IAI47_04715 0.39 -0.9
993,906 - IAI47_04715 0.39 +1.2
993,906 - IAI47_04715 0.39 -0.4
993,927 - IAI47_04715 0.42 +2.1
993,927 - IAI47_04715 0.42 -0.5
993,933 + IAI47_04715 0.43 -2.2
993,934 - IAI47_04715 0.43 -0.9
993,934 - IAI47_04715 0.43 -0.2
993,934 - IAI47_04715 0.43 +0.2
993,945 + IAI47_04715 0.44 +0.5
993,998 - IAI47_04715 0.52 -0.5
994,024 - IAI47_04715 0.56 +2.0
994,046 + IAI47_04715 0.59 +1.1
994,047 - IAI47_04715 0.59 +2.5
994,087 + IAI47_04715 0.65 +1.1
994,087 + IAI47_04715 0.65 -1.3
994,088 - IAI47_04715 0.65 +0.8
994,088 - IAI47_04715 0.65 -0.8
994,106 + IAI47_04715 0.68 +1.2
994,106 + IAI47_04715 0.68 +1.0
994,106 + IAI47_04715 0.68 +0.3
994,106 + IAI47_04715 0.68 -0.2
994,106 + IAI47_04715 0.68 +0.7
994,106 + IAI47_04715 0.68 -0.8
994,106 + IAI47_04715 0.68 -1.2
994,107 - IAI47_04715 0.68 -0.8
994,107 - IAI47_04715 0.68 -0.2
994,107 - IAI47_04715 0.68 -1.4
994,119 + IAI47_04715 0.70 +0.2
994,119 + IAI47_04715 0.70 +2.2
994,119 + IAI47_04715 0.70 +1.4
994,119 + IAI47_04715 0.70 -1.5
994,120 - IAI47_04715 0.70 -0.8
994,121 + IAI47_04715 0.70 +0.3
994,121 + IAI47_04715 0.70 +0.3
994,121 + IAI47_04715 0.70 +0.3
994,121 + IAI47_04715 0.70 -0.5
994,122 - IAI47_04715 0.70 +3.1
994,122 - IAI47_04715 0.70 -0.5
994,122 - IAI47_04715 0.70 +0.8
994,122 - IAI47_04715 0.70 -1.1
994,126 + IAI47_04715 0.71 +0.3
994,126 + IAI47_04715 0.71 +0.7
994,126 + IAI47_04715 0.71 -0.9
994,126 + IAI47_04715 0.71 -1.1
994,126 + IAI47_04715 0.71 -0.5
994,126 + IAI47_04715 0.71 +1.0

Or see this region's nucleotide sequence