Strain Fitness in Pantoea sp. MT58 around IAI47_03520

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03515 and IAI47_03520 overlap by 4 nucleotidesIAI47_03520 and IAI47_03525 overlap by 8 nucleotidesIAI47_03525 and IAI47_03530 overlap by 1 nucleotides IAI47_03515: IAI47_03515 - hemin-degrading factor, at 733,849 to 734,880 _03515 IAI47_03520: IAI47_03520 - hemin ABC transporter substrate-binding protein, at 734,877 to 735,698 _03520 IAI47_03525: IAI47_03525 - iron ABC transporter permease, at 735,691 to 736,689 _03525 IAI47_03530: IAI47_03530 - heme ABC transporter ATP-binding protein, at 736,689 to 737,465 _03530 Position (kb) 734 735 736Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 733.881 kb on + strandat 733.881 kb on + strandat 733.881 kb on + strandat 733.881 kb on + strandat 733.903 kb on + strandat 733.903 kb on + strandat 733.904 kb on - strandat 733.904 kb on - strandat 734.046 kb on + strand, within IAI47_03515at 734.046 kb on + strand, within IAI47_03515at 734.047 kb on - strand, within IAI47_03515at 734.047 kb on - strand, within IAI47_03515at 734.052 kb on + strand, within IAI47_03515at 734.060 kb on - strand, within IAI47_03515at 734.060 kb on - strand, within IAI47_03515at 734.060 kb on - strand, within IAI47_03515at 734.060 kb on - strand, within IAI47_03515at 734.066 kb on + strand, within IAI47_03515at 734.066 kb on + strand, within IAI47_03515at 734.066 kb on + strand, within IAI47_03515at 734.086 kb on + strand, within IAI47_03515at 734.086 kb on + strand, within IAI47_03515at 734.086 kb on + strand, within IAI47_03515at 734.086 kb on + strand, within IAI47_03515at 734.087 kb on - strand, within IAI47_03515at 734.087 kb on - strand, within IAI47_03515at 734.087 kb on - strand, within IAI47_03515at 734.127 kb on + strand, within IAI47_03515at 734.127 kb on + strand, within IAI47_03515at 734.128 kb on - strand, within IAI47_03515at 734.128 kb on - strand, within IAI47_03515at 734.220 kb on + strand, within IAI47_03515at 734.220 kb on + strand, within IAI47_03515at 734.221 kb on - strand, within IAI47_03515at 734.263 kb on + strand, within IAI47_03515at 734.263 kb on + strand, within IAI47_03515at 734.316 kb on + strand, within IAI47_03515at 734.316 kb on + strand, within IAI47_03515at 734.449 kb on - strand, within IAI47_03515at 734.540 kb on + strand, within IAI47_03515at 734.540 kb on + strand, within IAI47_03515at 734.540 kb on + strand, within IAI47_03515at 734.540 kb on + strand, within IAI47_03515at 734.541 kb on - strand, within IAI47_03515at 734.598 kb on + strand, within IAI47_03515at 734.714 kb on + strand, within IAI47_03515at 734.745 kb on + strand, within IAI47_03515at 734.745 kb on + strand, within IAI47_03515at 734.745 kb on + strand, within IAI47_03515at 734.746 kb on - strand, within IAI47_03515at 734.794 kb on + strandat 734.794 kb on + strandat 734.795 kb on - strandat 734.815 kb on - strandat 734.896 kb on + strandat 734.896 kb on + strandat 734.897 kb on - strandat 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.969 kb on + strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.970 kb on - strand, within IAI47_03520at 734.973 kb on + strand, within IAI47_03520at 734.973 kb on + strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.974 kb on - strand, within IAI47_03520at 734.998 kb on + strand, within IAI47_03520at 734.999 kb on - strand, within IAI47_03520at 734.999 kb on - strand, within IAI47_03520at 734.999 kb on - strand, within IAI47_03520at 735.060 kb on + strand, within IAI47_03520at 735.060 kb on + strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.061 kb on - strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.062 kb on + strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.063 kb on - strand, within IAI47_03520at 735.228 kb on - strand, within IAI47_03520at 735.228 kb on - strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.339 kb on + strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.340 kb on - strand, within IAI47_03520at 735.432 kb on - strand, within IAI47_03520at 735.432 kb on - strand, within IAI47_03520at 735.432 kb on - strand, within IAI47_03520at 735.450 kb on + strand, within IAI47_03520at 735.450 kb on + strand, within IAI47_03520at 735.450 kb on + strand, within IAI47_03520at 735.451 kb on - strand, within IAI47_03520at 735.503 kb on - strand, within IAI47_03520at 735.557 kb on - strand, within IAI47_03520at 735.641 kb on + strandat 735.642 kb on - strandat 735.642 kb on - strandat 735.642 kb on - strandat 735.642 kb on - strandat 735.696 kb on + strandat 735.697 kb on - strandat 735.703 kb on - strandat 735.703 kb on - strandat 735.800 kb on + strand, within IAI47_03525at 735.825 kb on + strand, within IAI47_03525at 735.825 kb on + strand, within IAI47_03525at 735.825 kb on + strand, within IAI47_03525at 735.826 kb on - strand, within IAI47_03525at 735.826 kb on - strand, within IAI47_03525at 735.826 kb on - strand, within IAI47_03525at 735.867 kb on - strand, within IAI47_03525at 735.867 kb on - strand, within IAI47_03525at 735.867 kb on - strand, within IAI47_03525at 735.931 kb on - strand, within IAI47_03525at 736.002 kb on + strand, within IAI47_03525at 736.002 kb on + strand, within IAI47_03525at 736.031 kb on + strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.032 kb on - strand, within IAI47_03525at 736.040 kb on + strand, within IAI47_03525at 736.144 kb on - strand, within IAI47_03525at 736.153 kb on - strand, within IAI47_03525at 736.175 kb on + strand, within IAI47_03525at 736.310 kb on + strand, within IAI47_03525at 736.332 kb on + strand, within IAI47_03525at 736.366 kb on + strand, within IAI47_03525at 736.366 kb on + strand, within IAI47_03525at 736.366 kb on + strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.367 kb on - strand, within IAI47_03525at 736.390 kb on - strand, within IAI47_03525at 736.390 kb on - strand, within IAI47_03525at 736.431 kb on + strand, within IAI47_03525at 736.432 kb on - strand, within IAI47_03525at 736.432 kb on - strand, within IAI47_03525at 736.432 kb on - strand, within IAI47_03525at 736.551 kb on + strand, within IAI47_03525at 736.551 kb on + strand, within IAI47_03525at 736.551 kb on + strand, within IAI47_03525at 736.552 kb on - strand, within IAI47_03525at 736.552 kb on - strand, within IAI47_03525at 736.620 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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733,881 + -0.3
733,881 + -0.4
733,881 + -2.6
733,881 + +0.2
733,903 + -0.9
733,903 + +1.0
733,904 - +1.0
733,904 - +0.7
734,046 + IAI47_03515 0.19 +0.8
734,046 + IAI47_03515 0.19 +0.6
734,047 - IAI47_03515 0.19 -0.6
734,047 - IAI47_03515 0.19 -0.6
734,052 + IAI47_03515 0.20 -0.3
734,060 - IAI47_03515 0.20 -0.4
734,060 - IAI47_03515 0.20 +2.4
734,060 - IAI47_03515 0.20 +1.8
734,060 - IAI47_03515 0.20 +0.7
734,066 + IAI47_03515 0.21 +1.3
734,066 + IAI47_03515 0.21 -0.7
734,066 + IAI47_03515 0.21 +1.0
734,086 + IAI47_03515 0.23 -0.6
734,086 + IAI47_03515 0.23 -0.1
734,086 + IAI47_03515 0.23 +0.9
734,086 + IAI47_03515 0.23 +0.1
734,087 - IAI47_03515 0.23 -0.4
734,087 - IAI47_03515 0.23 +3.3
734,087 - IAI47_03515 0.23 -0.8
734,127 + IAI47_03515 0.27 +0.6
734,127 + IAI47_03515 0.27 -1.6
734,128 - IAI47_03515 0.27 +0.2
734,128 - IAI47_03515 0.27 +0.8
734,220 + IAI47_03515 0.36 +0.8
734,220 + IAI47_03515 0.36 -1.4
734,221 - IAI47_03515 0.36 +0.4
734,263 + IAI47_03515 0.40 -0.8
734,263 + IAI47_03515 0.40 +1.7
734,316 + IAI47_03515 0.45 +1.9
734,316 + IAI47_03515 0.45 +0.3
734,449 - IAI47_03515 0.58 +1.7
734,540 + IAI47_03515 0.67 +0.2
734,540 + IAI47_03515 0.67 +4.6
734,540 + IAI47_03515 0.67 +0.9
734,540 + IAI47_03515 0.67 -1.4
734,541 - IAI47_03515 0.67 +0.8
734,598 + IAI47_03515 0.73 -1.3
734,714 + IAI47_03515 0.84 +0.4
734,745 + IAI47_03515 0.87 -0.1
734,745 + IAI47_03515 0.87 +0.7
734,745 + IAI47_03515 0.87 -0.3
734,746 - IAI47_03515 0.87 +1.4
734,794 + -0.0
734,794 + +1.9
734,795 - +1.6
734,815 - -0.2
734,896 + +0.1
734,896 + +1.0
734,897 - +0.6
734,969 + IAI47_03520 0.11 -1.3
734,969 + IAI47_03520 0.11 -0.9
734,969 + IAI47_03520 0.11 +1.6
734,969 + IAI47_03520 0.11 +0.0
734,969 + IAI47_03520 0.11 -1.0
734,969 + IAI47_03520 0.11 -0.9
734,969 + IAI47_03520 0.11 +1.3
734,969 + IAI47_03520 0.11 -0.3
734,969 + IAI47_03520 0.11 -0.4
734,970 - IAI47_03520 0.11 +1.3
734,970 - IAI47_03520 0.11 -0.1
734,970 - IAI47_03520 0.11 -0.6
734,970 - IAI47_03520 0.11 +1.0
734,970 - IAI47_03520 0.11 -0.1
734,970 - IAI47_03520 0.11 -0.6
734,970 - IAI47_03520 0.11 -0.7
734,970 - IAI47_03520 0.11 -0.9
734,973 + IAI47_03520 0.12 -1.3
734,973 + IAI47_03520 0.12 +1.7
734,974 - IAI47_03520 0.12 -0.2
734,974 - IAI47_03520 0.12 -0.6
734,974 - IAI47_03520 0.12 +0.3
734,974 - IAI47_03520 0.12 -1.0
734,974 - IAI47_03520 0.12 -0.5
734,974 - IAI47_03520 0.12 -2.1
734,998 + IAI47_03520 0.15 +1.1
734,999 - IAI47_03520 0.15 +1.1
734,999 - IAI47_03520 0.15 -1.7
734,999 - IAI47_03520 0.15 +1.2
735,060 + IAI47_03520 0.22 +0.2
735,060 + IAI47_03520 0.22 +2.1
735,061 - IAI47_03520 0.22 -1.2
735,061 - IAI47_03520 0.22 -0.1
735,061 - IAI47_03520 0.22 +1.3
735,061 - IAI47_03520 0.22 +0.7
735,061 - IAI47_03520 0.22 +2.1
735,062 + IAI47_03520 0.23 +1.4
735,062 + IAI47_03520 0.23 +1.3
735,062 + IAI47_03520 0.23 +0.4
735,062 + IAI47_03520 0.23 -0.9
735,062 + IAI47_03520 0.23 -0.4
735,062 + IAI47_03520 0.23 +0.3
735,062 + IAI47_03520 0.23 +1.2
735,062 + IAI47_03520 0.23 +1.0
735,062 + IAI47_03520 0.23 -2.6
735,062 + IAI47_03520 0.23 +0.5
735,063 - IAI47_03520 0.23 -0.4
735,063 - IAI47_03520 0.23 +2.0
735,063 - IAI47_03520 0.23 +0.2
735,063 - IAI47_03520 0.23 -1.4
735,063 - IAI47_03520 0.23 +0.1
735,063 - IAI47_03520 0.23 +1.1
735,063 - IAI47_03520 0.23 -1.8
735,063 - IAI47_03520 0.23 +1.6
735,063 - IAI47_03520 0.23 +0.6
735,063 - IAI47_03520 0.23 -2.5
735,063 - IAI47_03520 0.23 -0.4
735,063 - IAI47_03520 0.23 -1.9
735,228 - IAI47_03520 0.43 +2.0
735,228 - IAI47_03520 0.43 +0.8
735,339 + IAI47_03520 0.56 +1.8
735,339 + IAI47_03520 0.56 +2.0
735,339 + IAI47_03520 0.56 +1.1
735,339 + IAI47_03520 0.56 -0.6
735,339 + IAI47_03520 0.56 -0.2
735,339 + IAI47_03520 0.56 +1.8
735,339 + IAI47_03520 0.56 -1.9
735,339 + IAI47_03520 0.56 -1.3
735,340 - IAI47_03520 0.56 +1.3
735,340 - IAI47_03520 0.56 +0.6
735,340 - IAI47_03520 0.56 -0.3
735,340 - IAI47_03520 0.56 +1.8
735,340 - IAI47_03520 0.56 -0.4
735,340 - IAI47_03520 0.56 +0.7
735,340 - IAI47_03520 0.56 -1.4
735,432 - IAI47_03520 0.68 +0.6
735,432 - IAI47_03520 0.68 +0.7
735,432 - IAI47_03520 0.68 +1.0
735,450 + IAI47_03520 0.70 -0.1
735,450 + IAI47_03520 0.70 -0.0
735,450 + IAI47_03520 0.70 +1.0
735,451 - IAI47_03520 0.70 +1.6
735,503 - IAI47_03520 0.76 -1.6
735,557 - IAI47_03520 0.83 -0.8
735,641 + -0.8
735,642 - +2.0
735,642 - -2.0
735,642 - +3.0
735,642 - -0.7
735,696 + +1.0
735,697 - +1.2
735,703 - +2.2
735,703 - +2.1
735,800 + IAI47_03525 0.11 +0.5
735,825 + IAI47_03525 0.13 -1.4
735,825 + IAI47_03525 0.13 +2.1
735,825 + IAI47_03525 0.13 +0.2
735,826 - IAI47_03525 0.14 -0.5
735,826 - IAI47_03525 0.14 -1.3
735,826 - IAI47_03525 0.14 +0.5
735,867 - IAI47_03525 0.18 +0.4
735,867 - IAI47_03525 0.18 -0.0
735,867 - IAI47_03525 0.18 +0.8
735,931 - IAI47_03525 0.24 -0.2
736,002 + IAI47_03525 0.31 +1.2
736,002 + IAI47_03525 0.31 -0.1
736,031 + IAI47_03525 0.34 +0.4
736,032 - IAI47_03525 0.34 -0.8
736,032 - IAI47_03525 0.34 +2.6
736,032 - IAI47_03525 0.34 +0.6
736,032 - IAI47_03525 0.34 +0.9
736,032 - IAI47_03525 0.34 -1.5
736,032 - IAI47_03525 0.34 +0.4
736,040 + IAI47_03525 0.35 +2.6
736,144 - IAI47_03525 0.45 -0.1
736,153 - IAI47_03525 0.46 -0.6
736,175 + IAI47_03525 0.48 +0.1
736,310 + IAI47_03525 0.62 +0.5
736,332 + IAI47_03525 0.64 +2.6
736,366 + IAI47_03525 0.68 +0.2
736,366 + IAI47_03525 0.68 +0.4
736,366 + IAI47_03525 0.68 +0.7
736,367 - IAI47_03525 0.68 -2.1
736,367 - IAI47_03525 0.68 -0.4
736,367 - IAI47_03525 0.68 +0.7
736,367 - IAI47_03525 0.68 +0.3
736,390 - IAI47_03525 0.70 +1.4
736,390 - IAI47_03525 0.70 -1.4
736,431 + IAI47_03525 0.74 -1.8
736,432 - IAI47_03525 0.74 +2.7
736,432 - IAI47_03525 0.74 -1.3
736,432 - IAI47_03525 0.74 +0.6
736,551 + IAI47_03525 0.86 -0.4
736,551 + IAI47_03525 0.86 -0.2
736,551 + IAI47_03525 0.86 +0.2
736,552 - IAI47_03525 0.86 +1.2
736,552 - IAI47_03525 0.86 -1.1
736,620 - -0.5

Or see this region's nucleotide sequence