Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03065 and IAI47_03070 are separated by 29 nucleotides IAI47_03070 and IAI47_03075 are separated by 108 nucleotides IAI47_03075 and IAI47_03080 are separated by 190 nucleotides
IAI47_03065: IAI47_03065 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 633,723 to 634,736
_03065
IAI47_03070: IAI47_03070 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 634,766 to 635,371
_03070
IAI47_03075: IAI47_03075 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 635,480 to 635,839
_03075
IAI47_03080: IAI47_03080 - undecaprenyl-diphosphate phosphatase, at 636,030 to 636,848
_03080
Position (kb) 634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 634.855 kb on + strand, within IAI47_03070 at 634.855 kb on + strand, within IAI47_03070 at 634.855 kb on + strand, within IAI47_03070 at 634.855 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.956 kb on + strand, within IAI47_03070 at 634.967 kb on + strand, within IAI47_03070 at 634.968 kb on - strand, within IAI47_03070 at 634.968 kb on - strand, within IAI47_03070 at 634.968 kb on - strand, within IAI47_03070 at 635.006 kb on + strand, within IAI47_03070 at 635.007 kb on - strand, within IAI47_03070 at 635.007 kb on - strand, within IAI47_03070 at 635.086 kb on - strand, within IAI47_03070 at 635.086 kb on - strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.127 kb on + strand, within IAI47_03070 at 635.127 kb on + strand, within IAI47_03070 at 635.128 kb on - strand, within IAI47_03070 at 635.151 kb on + strand, within IAI47_03070 at 635.152 kb on - strand, within IAI47_03070 at 635.152 kb on - strand, within IAI47_03070 at 635.152 kb on - strand, within IAI47_03070 at 635.195 kb on + strand, within IAI47_03070 at 635.195 kb on + strand, within IAI47_03070 at 635.195 kb on + strand, within IAI47_03070 at 635.196 kb on - strand, within IAI47_03070 at 635.196 kb on - strand, within IAI47_03070 at 635.196 kb on - strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.199 kb on - strand, within IAI47_03070 at 635.199 kb on - strand at 635.199 kb on - strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.235 kb on - strand, within IAI47_03070 at 635.235 kb on - strand, within IAI47_03070 at 635.235 kb on - strand, within IAI47_03070 at 635.266 kb on - strand, within IAI47_03070 at 635.335 kb on - strand at 635.344 kb on + strand at 635.344 kb on + strand at 635.345 kb on - strand at 635.345 kb on - strand at 635.350 kb on + strand at 635.350 kb on + strand at 635.350 kb on + strand at 635.350 kb on + strand at 635.351 kb on - strand at 635.371 kb on + strand at 635.371 kb on + strand at 635.372 kb on - strand at 635.372 kb on - strand at 635.372 kb on - strand at 635.379 kb on + strand at 635.380 kb on - strand at 635.380 kb on - strand at 635.380 kb on - strand at 635.392 kb on - strand at 635.421 kb on + strand at 635.421 kb on + strand at 635.422 kb on - strand at 635.422 kb on - strand at 635.422 kb on - strand at 635.422 kb on - strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.425 kb on - strand at 635.425 kb on - strand at 635.425 kb on - strand at 635.425 kb on - strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.447 kb on + strand at 635.457 kb on - strand at 635.827 kb on + strand at 635.837 kb on + strand at 635.837 kb on + strand at 635.838 kb on - strand at 635.838 kb on - strand at 635.841 kb on + strand at 635.841 kb on + strand at 635.842 kb on - strand at 635.842 kb on - strand at 635.879 kb on + strand at 635.879 kb on + strand at 635.879 kb on + strand at 635.880 kb on - strand at 635.880 kb on - strand at 635.880 kb on - strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.892 kb on - strand at 635.892 kb on - strand at 635.892 kb on - strand at 635.909 kb on + strand at 635.909 kb on + strand at 635.928 kb on + strand at 635.928 kb on + strand at 635.935 kb on + strand at 635.936 kb on - strand at 635.936 kb on - strand at 635.942 kb on + strand at 635.942 kb on + strand at 635.943 kb on - strand at 635.943 kb on - strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.955 kb on + strand at 635.955 kb on + strand at 635.956 kb on - strand at 635.956 kb on - strand at 635.956 kb on - strand at 635.964 kb on - strand at 635.977 kb on - strand at 635.998 kb on + strand at 635.998 kb on + strand at 635.998 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.055 kb on + strand at 636.056 kb on - strand at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.211 kb on + strand, within IAI47_03080 at 636.211 kb on + strand, within IAI47_03080 at 636.211 kb on + strand, within IAI47_03080 at 636.212 kb on - strand, within IAI47_03080 at 636.212 kb on - strand, within IAI47_03080 at 636.266 kb on + strand, within IAI47_03080 at 636.267 kb on - strand, within IAI47_03080 at 636.267 kb on - strand, within IAI47_03080 at 636.320 kb on + strand, within IAI47_03080 at 636.321 kb on - strand, within IAI47_03080
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 634,855 + IAI47_03070 0.15 +0.4 634,855 + IAI47_03070 0.15 +1.3 634,855 + IAI47_03070 0.15 -0.2 634,855 + IAI47_03070 0.15 +0.4 634,911 + IAI47_03070 0.24 +0.0 634,911 + IAI47_03070 0.24 -2.2 634,911 + IAI47_03070 0.24 -1.2 634,911 + IAI47_03070 0.24 -1.9 634,911 + IAI47_03070 0.24 -1.2 634,912 - IAI47_03070 0.24 +2.6 634,912 - IAI47_03070 0.24 -1.4 634,912 - IAI47_03070 0.24 -2.6 634,912 - IAI47_03070 0.24 -1.3 634,912 - IAI47_03070 0.24 -0.4 634,956 + IAI47_03070 0.31 +1.2 634,967 + IAI47_03070 0.33 -0.6 634,968 - IAI47_03070 0.33 +0.2 634,968 - IAI47_03070 0.33 +0.6 634,968 - IAI47_03070 0.33 -0.6 635,006 + IAI47_03070 0.40 -1.1 635,007 - IAI47_03070 0.40 -0.5 635,007 - IAI47_03070 0.40 -0.8 635,086 - IAI47_03070 0.53 +1.0 635,086 - IAI47_03070 0.53 -1.0 635,089 + IAI47_03070 0.53 -0.8 635,089 + IAI47_03070 0.53 -1.0 635,089 + IAI47_03070 0.53 -2.5 635,089 + IAI47_03070 0.53 -0.2 635,089 + IAI47_03070 0.53 -2.0 635,089 + IAI47_03070 0.53 -0.4 635,090 - IAI47_03070 0.53 -0.6 635,090 - IAI47_03070 0.53 -0.5 635,090 - IAI47_03070 0.53 -1.5 635,090 - IAI47_03070 0.53 -1.9 635,090 - IAI47_03070 0.53 -0.6 635,127 + IAI47_03070 0.60 -1.1 635,127 + IAI47_03070 0.60 -2.3 635,128 - IAI47_03070 0.60 -1.8 635,151 + IAI47_03070 0.64 +1.2 635,152 - IAI47_03070 0.64 -0.6 635,152 - IAI47_03070 0.64 -2.9 635,152 - IAI47_03070 0.64 +0.0 635,195 + IAI47_03070 0.71 -0.7 635,195 + IAI47_03070 0.71 -0.1 635,195 + IAI47_03070 0.71 -0.3 635,196 - IAI47_03070 0.71 -0.4 635,196 - IAI47_03070 0.71 -2.7 635,196 - IAI47_03070 0.71 -1.8 635,198 + IAI47_03070 0.71 -1.7 635,198 + IAI47_03070 0.71 +1.0 635,198 + IAI47_03070 0.71 -2.7 635,198 + IAI47_03070 0.71 -1.9 635,199 - IAI47_03070 0.71 -1.6 635,199 - -1.1 635,199 - IAI47_03070 0.71 -0.4 635,234 + IAI47_03070 0.77 -0.6 635,234 + IAI47_03070 0.77 +0.4 635,234 + IAI47_03070 0.77 -0.7 635,234 + IAI47_03070 0.77 -2.8 635,234 + IAI47_03070 0.77 -2.1 635,234 + IAI47_03070 0.77 -1.5 635,234 + IAI47_03070 0.77 -0.7 635,235 - IAI47_03070 0.77 +0.0 635,235 - IAI47_03070 0.77 -1.0 635,235 - IAI47_03070 0.77 +1.3 635,266 - IAI47_03070 0.83 -1.9 635,335 - -1.5 635,344 + -0.6 635,344 + +2.6 635,345 - +0.6 635,345 - -0.6 635,350 + -3.6 635,350 + -1.1 635,350 + -0.3 635,350 + -1.8 635,351 - +0.5 635,371 + +1.9 635,371 + +1.8 635,372 - -1.1 635,372 - -0.8 635,372 - -0.5 635,379 + -0.5 635,380 - -1.4 635,380 - -0.2 635,380 - -0.7 635,392 - -0.7 635,421 + +0.0 635,421 + -3.2 635,422 - -0.3 635,422 - +0.7 635,422 - +1.8 635,422 - +0.5 635,424 + -1.4 635,424 + -1.2 635,424 + -0.1 635,424 + +0.9 635,424 + -0.7 635,424 + -0.4 635,424 + -1.2 635,424 + -0.9 635,424 + -2.1 635,425 - -1.5 635,425 - +0.3 635,425 - -1.0 635,425 - -0.1 635,430 + -0.4 635,430 + +1.3 635,430 + -0.2 635,430 + -1.5 635,430 + +1.6 635,430 + -1.0 635,431 - +2.6 635,431 - +1.5 635,431 - +0.0 635,431 - -0.4 635,431 - -1.0 635,431 - +0.1 635,447 + -0.2 635,457 - -1.2 635,827 + +1.4 635,837 + -0.8 635,837 + -0.1 635,838 - -0.6 635,838 - +0.6 635,841 + -3.2 635,841 + +1.7 635,842 - -0.2 635,842 - +0.8 635,879 + -0.3 635,879 + +0.1 635,879 + +0.2 635,880 - -0.8 635,880 - -1.0 635,880 - -0.4 635,891 + +0.8 635,891 + +1.5 635,891 + -0.9 635,891 + +1.6 635,891 + +0.2 635,892 - +1.0 635,892 - -0.5 635,892 - -0.2 635,909 + -0.3 635,909 + +1.9 635,928 + +0.1 635,928 + +2.1 635,935 + +1.2 635,936 - -1.9 635,936 - +0.6 635,942 + +0.8 635,942 + -0.7 635,943 - +0.3 635,943 - -0.6 635,953 + +1.7 635,953 + +1.6 635,953 + +1.2 635,953 + -0.4 635,953 + +2.0 635,953 + +0.1 635,953 + +0.9 635,953 + +0.5 635,953 + +1.4 635,954 - +0.9 635,954 - +0.4 635,954 - -0.4 635,954 - -0.2 635,954 - -0.9 635,954 - -0.1 635,955 + +0.3 635,955 + -0.1 635,956 - +1.4 635,956 - -2.2 635,956 - +0.4 635,964 - -1.0 635,977 - -1.5 635,998 + -1.7 635,998 + +1.7 635,998 + +0.1 636,038 + +1.4 636,038 + +0.9 636,038 + +0.6 636,038 + +1.1 636,038 + +0.9 636,038 + -1.1 636,038 + -1.4 636,039 - -1.2 636,039 - -1.6 636,039 - -2.1 636,039 - +0.5 636,039 - -0.2 636,039 - -0.6 636,055 + -0.1 636,056 - -0.3 636,125 + IAI47_03080 0.12 -0.4 636,125 + IAI47_03080 0.12 -0.1 636,125 + IAI47_03080 0.12 -0.7 636,125 + IAI47_03080 0.12 -0.1 636,125 + IAI47_03080 0.12 -0.2 636,125 + IAI47_03080 0.12 -1.6 636,125 + IAI47_03080 0.12 -0.2 636,125 + IAI47_03080 0.12 +2.1 636,125 + IAI47_03080 0.12 +2.0 636,125 + IAI47_03080 0.12 -2.2 636,125 + IAI47_03080 0.12 -1.3 636,125 + IAI47_03080 0.12 -0.2 636,125 + IAI47_03080 0.12 +1.5 636,125 + IAI47_03080 0.12 -0.4 636,126 - IAI47_03080 0.12 +0.9 636,126 - IAI47_03080 0.12 -0.2 636,126 - IAI47_03080 0.12 -0.8 636,126 - IAI47_03080 0.12 -1.9 636,126 - IAI47_03080 0.12 +0.3 636,126 - IAI47_03080 0.12 +0.7 636,126 - IAI47_03080 0.12 -0.2 636,126 - IAI47_03080 0.12 -1.3 636,126 - IAI47_03080 0.12 +0.7 636,126 - IAI47_03080 0.12 -0.5 636,126 - IAI47_03080 0.12 +0.4 636,126 - IAI47_03080 0.12 -1.0 636,126 - IAI47_03080 0.12 -0.4 636,127 + IAI47_03080 0.12 -0.6 636,127 + IAI47_03080 0.12 -0.5 636,127 + IAI47_03080 0.12 -0.2 636,127 + IAI47_03080 0.12 +1.6 636,127 + IAI47_03080 0.12 -0.1 636,128 - IAI47_03080 0.12 -0.4 636,128 - IAI47_03080 0.12 +1.4 636,128 - IAI47_03080 0.12 -2.4 636,128 - IAI47_03080 0.12 +0.5 636,128 - IAI47_03080 0.12 -1.0 636,128 - IAI47_03080 0.12 -0.8 636,128 - IAI47_03080 0.12 -1.2 636,128 - IAI47_03080 0.12 -0.3 636,128 - IAI47_03080 0.12 -0.1 636,191 - IAI47_03080 0.20 -2.5 636,191 - IAI47_03080 0.20 +0.6 636,191 - IAI47_03080 0.20 +0.6 636,191 - IAI47_03080 0.20 -0.2 636,211 + IAI47_03080 0.22 -1.5 636,211 + IAI47_03080 0.22 -1.1 636,211 + IAI47_03080 0.22 -1.2 636,212 - IAI47_03080 0.22 +0.6 636,212 - IAI47_03080 0.22 -0.1 636,266 + IAI47_03080 0.29 +2.6 636,267 - IAI47_03080 0.29 -1.0 636,267 - IAI47_03080 0.29 -0.4 636,320 + IAI47_03080 0.35 -1.4 636,321 - IAI47_03080 0.36 -1.3
Or see this region's nucleotide sequence