Strain Fitness in Pantoea sp. MT58 around IAI47_18880

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
8,859	+		IAI47_18875	0.45	-0.5
8,859	+		IAI47_18875	0.45	-0.5
8,859	+		IAI47_18875	0.45	+0.2
8,860	-		IAI47_18875	0.46	-1.3
8,860	-		IAI47_18875	0.46	+0.7
8,860	-		IAI47_18875	0.46	+0.1
8,860	-		IAI47_18875	0.46	+0.4
8,860	-		IAI47_18875	0.46	-0.3
8,860	-		IAI47_18875	0.46	+0.1
8,860	-		IAI47_18875	0.46	-0.6
8,860	-		IAI47_18875	0.46	-1.8
8,866	-		IAI47_18875	0.46	+0.6
8,883	+		IAI47_18875	0.47	-1.1
8,928	+		IAI47_18875	0.50	-0.6
8,986	+		IAI47_18875	0.54	+0.1
8,987	-		IAI47_18875	0.54	+1.3
8,987	-		IAI47_18875	0.54	-0.9
8,987	-		IAI47_18875	0.54	+1.0
8,990	+		IAI47_18875	0.54	-2.2
8,990	+		IAI47_18875	0.54	+3.1
8,991	-		IAI47_18875	0.54	+0.4
8,991	-		IAI47_18875	0.54	+0.8
8,991	-		IAI47_18875	0.54	-0.5
8,991	-		IAI47_18875	0.54	+1.5
8,992	+		IAI47_18875	0.54	+0.4
8,993	-		IAI47_18875	0.54	-1.7
8,993	-		IAI47_18875	0.54	-2.3
9,026	+		IAI47_18875	0.57	-0.1
9,027	-		IAI47_18875	0.57	-1.7
9,027	-		IAI47_18875	0.57	+2.3
9,076	+		IAI47_18875	0.60	+1.0
9,077	-		IAI47_18875	0.60	+0.2
9,130	+		IAI47_18875	0.64	+1.8
9,131	-		IAI47_18875	0.64	+1.4
9,131	-		IAI47_18875	0.64	+0.3
9,131	-		IAI47_18875	0.64	-1.4
9,131	-		IAI47_18875	0.64	+0.3
9,164	+		IAI47_18875	0.66	-0.9
9,164	+		IAI47_18875	0.66	-0.1
9,201	+		IAI47_18875	0.68	+0.3
9,202	-		IAI47_18875	0.68	-1.8
9,202	-		IAI47_18875	0.68	+2.0
9,237	+		IAI47_18875	0.71	-2.2
9,254	+		IAI47_18875	0.72	+0.9
9,255	-		IAI47_18875	0.72	-0.4
9,297	-		IAI47_18875	0.75	-0.5
9,310	+		IAI47_18875	0.76	-2.4
9,317	-		IAI47_18875	0.76	-0.2
9,317	-		IAI47_18875	0.76	+0.9
9,317	-		IAI47_18875	0.76	-0.5
9,317	-		IAI47_18875	0.76	+0.5
9,385	+		IAI47_18875	0.81	+0.9
9,385	+		IAI47_18875	0.81	+0.3
9,385	+		IAI47_18875	0.81	-0.6
9,386	-		IAI47_18875	0.81	-0.1
9,465	+		IAI47_18875	0.86	-1.4
9,465	+		IAI47_18875	0.86	-0.3
9,466	-		IAI47_18875	0.86	+1.6
9,466	-		IAI47_18875	0.86	-0.3
9,466	-		IAI47_18875	0.86	-0.9
9,466	-		IAI47_18875	0.86	-0.5
9,466	-		IAI47_18875	0.86	-0.8
9,466	-		IAI47_18875	0.86	-0.4
9,466	-		IAI47_18875	0.86	-1.6
9,466	-		IAI47_18875	0.86	-0.3
9,466	-		IAI47_18875	0.86	-0.9
9,467	+		IAI47_18875	0.86	-0.2
9,468	-		IAI47_18875	0.86	-1.1
9,468	-		IAI47_18875	0.86	-0.9
9,468	-		IAI47_18875	0.86	+1.9
9,468	-		IAI47_18875	0.86	+0.5
9,484	+		IAI47_18875	0.87	+0.5
9,485	-		IAI47_18875	0.87	+0.5
9,502	+		IAI47_18875	0.88	+1.0
9,526	-		IAI47_18875	0.90	-1.4
9,578	-				+1.2
9,578	-				-1.6
9,593	+				-0.1
9,594	-				+0.1
9,599	+				-0.2
9,599	+				+1.2
9,599	+				+1.9
9,599	+				-1.4
9,599	+				-1.4
9,599	+				+0.7
9,600	-				+0.7
9,600	-				-1.0
9,717	+				+2.9
9,717	+				-0.7
9,717	+				+2.0
9,717	+				-0.1
9,717	+				+0.3
9,717	+				-0.7
9,717	+				-0.7
9,717	+				-0.2
9,718	-				+0.3
9,718	-				+1.7
9,718	-				+0.9
9,806	-		IAI47_18880	0.11	-1.2
9,806	-		IAI47_18880	0.11	+0.2
9,823	+		IAI47_18880	0.13	+0.9
9,824	-		IAI47_18880	0.13	+0.8
9,824	-		IAI47_18880	0.13	-0.4
9,898	+		IAI47_18880	0.21	+0.1
9,898	+		IAI47_18880	0.21	-1.3
9,951	+		IAI47_18880	0.27	+1.7
9,951	+		IAI47_18880	0.27	+0.1
9,952	-		IAI47_18880	0.28	-1.6
9,952	-		IAI47_18880	0.28	+0.8
9,952	-		IAI47_18880	0.28	-1.3
10,012	+		IAI47_18880	0.35	+1.5
10,014	+		IAI47_18880	0.35	+0.5
10,014	+		IAI47_18880	0.35	+1.5
10,014	+		IAI47_18880	0.35	+1.2
10,014	+		IAI47_18880	0.35	+0.3
10,014	+		IAI47_18880	0.35	-0.5
10,014	+		IAI47_18880	0.35	-0.1
10,014	+		IAI47_18880	0.35	-1.4
10,015	-		IAI47_18880	0.35	+1.8
10,015	-		IAI47_18880	0.35	-0.1
10,015	-		IAI47_18880	0.35	-1.4
10,015	-		IAI47_18880	0.35	+0.9
10,015	-		IAI47_18880	0.35	+0.5
10,015	-		IAI47_18880	0.35	+0.2
10,015	-		IAI47_18880	0.35	-1.0
10,015	-		IAI47_18880	0.35	+0.5
10,015	-		IAI47_18880	0.35	+0.6
10,015	-		IAI47_18880	0.35	+0.6
10,018	+		IAI47_18880	0.35	+0.8
10,018	+		IAI47_18880	0.35	-1.7
10,018	+		IAI47_18880	0.35	+0.4
10,018	+		IAI47_18880	0.35	-1.6
10,018	+		IAI47_18880	0.35	-1.3
10,019	-		IAI47_18880	0.35	+0.8
10,019	-		IAI47_18880	0.35	+0.7
10,019	-		IAI47_18880	0.35	-0.7
10,019	-		IAI47_18880	0.35	-1.2
10,019	-		IAI47_18880	0.35	+1.4
10,019	-		IAI47_18880	0.35	-2.4
10,019	-		IAI47_18880	0.35	+0.5
10,118	+		IAI47_18880	0.47	+0.0
10,162	+		IAI47_18880	0.52	-2.7
10,162	+		IAI47_18880	0.52	-1.1
10,162	+		IAI47_18880	0.52	+0.7
10,183	+		IAI47_18880	0.55	+0.8
10,184	-		IAI47_18880	0.55	-0.9
10,184	-		IAI47_18880	0.55	+1.1
10,184	-		IAI47_18880	0.55	+0.3
10,234	+		IAI47_18880	0.61	+2.0
10,234	+		IAI47_18880	0.61	+0.7
10,311	-		IAI47_18880	0.70	+1.2
10,347	+		IAI47_18880	0.74	-0.7
10,348	-		IAI47_18880	0.74	+0.7
10,348	-		IAI47_18880	0.74	-1.8
10,364	+		IAI47_18880	0.76	+0.9
10,390	-		IAI47_18880	0.79	+1.2
10,408	+		IAI47_18880	0.81	+0.4
10,409	-		IAI47_18880	0.81	-1.2
10,448	+		IAI47_18880	0.86	-0.6
10,449	-		IAI47_18880	0.86	+0.0
10,449	-		IAI47_18880	0.86	+0.8
10,449	-		IAI47_18880	0.86	-0.0
10,449	-		IAI47_18880	0.86	+0.8
10,449	-		IAI47_18880	0.86	+0.5
10,497	-				-1.5
10,497	-				+1.2
10,513	-				-0.3
10,548	+				+0.9
10,548	+				-2.3
10,548	+				+2.3
10,549	-				-1.1
10,560	+				-0.7
10,561	+				-0.5
10,561	+				-2.1
10,562	-				+1.3
10,592	-				+1.1
10,592	-				-1.0
10,592	-				+0.9
10,602	+				+2.3
10,603	-				-2.1
10,613	+				-1.8
10,613	+				-3.0
10,626	-				-1.2
10,651	-				-0.4
10,651	-				-0.3
10,698	-				+2.8
10,897	-		IAI47_18885	0.24	-0.6
10,897	-		IAI47_18885	0.24	+3.1
10,897	-		IAI47_18885	0.24	-0.1
10,929	+		IAI47_18885	0.27	+1.3
10,929	+		IAI47_18885	0.27	-0.4
10,929	+		IAI47_18885	0.27	+1.1
10,929	+		IAI47_18885	0.27	-0.9
10,930	-		IAI47_18885	0.28	-0.6
10,930	-		IAI47_18885	0.28	+0.7
10,930	-		IAI47_18885	0.28	-0.7
10,932	+		IAI47_18885	0.28	-1.1
10,932	+		IAI47_18885	0.28	-0.1
10,932	+		IAI47_18885	0.28	-0.5
10,932	+		IAI47_18885	0.28	+1.3
10,986	-		IAI47_18885	0.33	-0.0
11,060	+		IAI47_18885	0.41	+0.2
11,060	+		IAI47_18885	0.41	-1.1
11,060	+		IAI47_18885	0.41	+0.3
11,061	-		IAI47_18885	0.41	-0.3
11,061	-		IAI47_18885	0.41	+0.4
11,061	-		IAI47_18885	0.41	+0.7
11,061	-		IAI47_18885	0.41	-0.1
11,061	-		IAI47_18885	0.41	-2.3
11,101	+		IAI47_18885	0.45	-1.1
11,101	+		IAI47_18885	0.45	-2.2
11,135	+		IAI47_18885	0.49	-0.8
11,135	+		IAI47_18885	0.49	+0.5
11,135	+		IAI47_18885	0.49	+0.4
11,135	+		IAI47_18885	0.49	-1.2
11,135	+		IAI47_18885	0.49	+0.4
11,135	+		IAI47_18885	0.49	-0.4
11,135	+		IAI47_18885	0.49	-0.9
11,135	+		IAI47_18885	0.49	-0.6
11,135	+		IAI47_18885	0.49	+0.3
11,135	+		IAI47_18885	0.49	-0.6
11,136	-		IAI47_18885	0.49	+0.9
11,136	-		IAI47_18885	0.49	-0.2
11,136	-		IAI47_18885	0.49	-0.3
11,136	-		IAI47_18885	0.49	-1.2
11,139	+		IAI47_18885	0.49	+1.6
11,139	+		IAI47_18885	0.49	+1.5
11,139	+		IAI47_18885	0.49	+1.4
11,139	+		IAI47_18885	0.49	-0.8
11,139	+		IAI47_18885	0.49	+0.2
11,139	+		IAI47_18885	0.49	+1.6
11,140	-		IAI47_18885	0.49	+0.1
11,140	-		IAI47_18885	0.49	+1.5
11,140	-		IAI47_18885	0.49	+0.8
11,140	-		IAI47_18885	0.49	+0.3
11,185	+		IAI47_18885	0.54	-0.1
11,185	+		IAI47_18885	0.54	+2.1
11,197	+		IAI47_18885	0.55	+0.8
11,226	+		IAI47_18885	0.58	+1.3
11,226	+		IAI47_18885	0.58	+3.9
11,227	-		IAI47_18885	0.58	+0.7
11,352	+		IAI47_18885	0.71	-1.7
11,353	-		IAI47_18885	0.72	-0.6
11,393	+		IAI47_18885	0.76	+1.1
11,393	+		IAI47_18885	0.76	-0.9
11,394	-		IAI47_18885	0.76	+1.9
11,398	+		IAI47_18885	0.76	-0.4
11,398	+		IAI47_18885	0.76	+0.5
11,398	+		IAI47_18885	0.76	-0.6
11,399	-		IAI47_18885	0.76	-1.5
11,399	-		IAI47_18885	0.76	-0.3
11,494	+		IAI47_18885	0.86	-0.4
11,497	+		IAI47_18885	0.87	-0.2
11,498	-		IAI47_18885	0.87	-1.1
11,530	-				-0.3
11,550	-				-2.3