Strain Fitness in Pantoea sp. MT58 around IAI47_18005

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,826,987	+		IAI47_18000	0.49	-0.0
3,826,988	-		IAI47_18000	0.49	+0.7
3,827,010	-		IAI47_18000	0.50	-0.9
3,827,036	+		IAI47_18000	0.52	-0.4
3,827,036	+		IAI47_18000	0.52	-1.8
3,827,036	+		IAI47_18000	0.52	+0.8
3,827,037	-		IAI47_18000	0.52	-1.5
3,827,037	-		IAI47_18000	0.52	-1.1
3,827,038	+		IAI47_18000	0.52	-0.1
3,827,038	+		IAI47_18000	0.52	-0.0
3,827,038	+		IAI47_18000	0.52	+0.5
3,827,038	+		IAI47_18000	0.52	+0.0
3,827,038	+		IAI47_18000	0.52	-0.9
3,827,038	+		IAI47_18000	0.52	+0.4
3,827,039	-		IAI47_18000	0.52	+0.7
3,827,039	-		IAI47_18000	0.52	-0.7
3,827,039	-		IAI47_18000	0.52	+1.4
3,827,039	-		IAI47_18000	0.52	-1.3
3,827,039	-		IAI47_18000	0.52	-0.4
3,827,039	-		IAI47_18000	0.52	+3.0
3,827,039	-		IAI47_18000	0.52	+2.1
3,827,039	-		IAI47_18000	0.52	+0.7
3,827,039	-		IAI47_18000	0.52	-0.9
3,827,039	-		IAI47_18000	0.52	+0.9
3,827,039	-		IAI47_18000	0.52	-1.1
3,827,039	-		IAI47_18000	0.52	-0.1
3,827,039	-		IAI47_18000	0.52	+0.3
3,827,039	-		IAI47_18000	0.52	-0.2
3,827,058	-		IAI47_18000	0.53	+1.1
3,827,101	-		IAI47_18000	0.55	-0.2
3,827,110	+		IAI47_18000	0.56	+0.5
3,827,110	+		IAI47_18000	0.56	+1.3
3,827,110	+		IAI47_18000	0.56	+0.4
3,827,110	+		IAI47_18000	0.56	+0.4
3,827,110	+		IAI47_18000	0.56	+0.1
3,827,110	+		IAI47_18000	0.56	+2.7
3,827,110	+		IAI47_18000	0.56	-0.5
3,827,110	+		IAI47_18000	0.56	-0.5
3,827,111	-		IAI47_18000	0.56	+0.2
3,827,111	-		IAI47_18000	0.56	-0.0
3,827,111	-		IAI47_18000	0.56	-0.3
3,827,111	-		IAI47_18000	0.56	+1.7
3,827,111	-		IAI47_18000	0.56	-0.3
3,827,111	-		IAI47_18000	0.56	-0.4
3,827,111	-		IAI47_18000	0.56	-0.2
3,827,111	-		IAI47_18000	0.56	-0.2
3,827,111	-		IAI47_18000	0.56	-0.5
3,827,111	-		IAI47_18000	0.56	+1.2
3,827,122	+		IAI47_18000	0.57	+0.3
3,827,123	-		IAI47_18000	0.57	+0.2
3,827,123	-		IAI47_18000	0.57	+0.7
3,827,123	-		IAI47_18000	0.57	-1.2
3,827,123	-		IAI47_18000	0.57	+0.4
3,827,234	+		IAI47_18000	0.63	-0.4
3,827,284	+		IAI47_18000	0.66	+0.8
3,827,285	-		IAI47_18000	0.66	+0.4
3,827,404	-		IAI47_18000	0.73	-0.3
3,827,404	-		IAI47_18000	0.73	-1.8
3,827,415	+		IAI47_18000	0.73	+3.0
3,827,424	+		IAI47_18000	0.74	+1.6
3,827,424	+		IAI47_18000	0.74	-1.9
3,827,424	+		IAI47_18000	0.74	-0.9
3,827,424	+		IAI47_18000	0.74	+1.4
3,827,425	-		IAI47_18000	0.74	-0.1
3,827,425	-		IAI47_18000	0.74	-0.2
3,827,467	-		IAI47_18000	0.76	-1.2
3,827,516	+		IAI47_18000	0.79	-1.2
3,827,516	+		IAI47_18000	0.79	+0.6
3,827,517	-		IAI47_18000	0.79	-1.0
3,827,563	+		IAI47_18000	0.82	+1.8
3,827,563	+		IAI47_18000	0.82	+1.5
3,827,564	-		IAI47_18000	0.82	+0.3
3,827,564	-		IAI47_18000	0.82	-0.6
3,827,573	+		IAI47_18000	0.82	+0.5
3,827,573	+		IAI47_18000	0.82	-1.6
3,827,574	-		IAI47_18000	0.83	-0.0
3,827,574	-		IAI47_18000	0.83	-1.1
3,827,626	+		IAI47_18000	0.85	-1.5
3,827,722	+				+0.1
3,827,722	+				+2.0
3,827,722	+				-0.8
3,827,722	+				-0.0
3,827,722	+				+2.0
3,827,722	+				+0.2
3,827,723	-				-0.0
3,827,723	-				+0.4
3,827,723	-				+0.0
3,827,723	-				+1.4
3,827,723	-				+0.7
3,827,723	-				+0.3
3,827,723	-				-0.8
3,827,723	-				+0.6
3,827,723	-				+0.4
3,827,801	+				+0.1
3,827,801	+				-1.2
3,827,802	-				-0.7
3,827,802	-				-0.8
3,827,805	-				+1.7
3,827,805	-				+0.2
3,827,821	+				+3.4
3,827,821	+				+0.5
3,827,822	-				+1.3
3,827,846	+				+0.2
3,827,846	+				-1.2
3,827,846	+				-0.3
3,827,846	+				-1.0
3,827,846	+				+1.0
3,827,846	+				+0.8
3,827,846	+				-0.9
3,827,847	-				+0.0
3,827,879	+				-0.8
3,827,879	+				-0.1
3,827,879	+				+0.0
3,827,880	-				+1.9
3,827,880	-				-0.7
3,827,993	-				-0.5
3,828,064	+				+0.9
3,828,064	+				-0.7
3,828,064	+				-0.9
3,828,064	+				+0.8
3,828,064	+				+0.5
3,828,064	+				-0.0
3,828,064	+				+0.9
3,828,064	+				-0.3
3,828,065	-				+1.6
3,828,065	-				+0.1
3,828,065	-				+0.5
3,828,114	+		IAI47_18005	0.13	+0.5
3,828,114	+		IAI47_18005	0.13	+0.6
3,828,115	-		IAI47_18005	0.13	+0.4
3,828,115	-		IAI47_18005	0.13	+1.6
3,828,115	-		IAI47_18005	0.13	-0.8
3,828,115	-		IAI47_18005	0.13	+0.9
3,828,115	-		IAI47_18005	0.13	+1.2
3,828,115	-		IAI47_18005	0.13	-0.4
3,828,141	+		IAI47_18005	0.15	+0.2
3,828,142	-		IAI47_18005	0.15	-0.2
3,828,281	-		IAI47_18005	0.26	-0.2
3,828,281	-		IAI47_18005	0.26	-0.5
3,828,300	+		IAI47_18005	0.27	+0.2
3,828,300	+		IAI47_18005	0.27	+0.1
3,828,300	+		IAI47_18005	0.27	+1.9
3,828,300	+		IAI47_18005	0.27	-0.1
3,828,300	+		IAI47_18005	0.27	-0.2
3,828,301	-		IAI47_18005	0.28	+3.2
3,828,301	-		IAI47_18005	0.28	+1.1
3,828,301	-		IAI47_18005	0.28	+0.8
3,828,301	-		IAI47_18005	0.28	-1.5
3,828,334	+		IAI47_18005	0.30	-1.3
3,828,335	-		IAI47_18005	0.30	-1.4
3,828,335	-		IAI47_18005	0.30	-2.3
3,828,335	-		IAI47_18005	0.30	-0.7
3,828,403	-		IAI47_18005	0.35	-1.3
3,828,403	-		IAI47_18005	0.35	+0.6
3,828,403	-		IAI47_18005	0.35	-1.8
3,828,403	-		IAI47_18005	0.35	-0.5
3,828,403	-		IAI47_18005	0.35	-1.8
3,828,403	-		IAI47_18005	0.35	+0.8
3,828,411	+		IAI47_18005	0.36	-1.1
3,828,411	+		IAI47_18005	0.36	+0.3
3,828,411	+		IAI47_18005	0.36	-2.0
3,828,411	+		IAI47_18005	0.36	-2.1
3,828,411	+		IAI47_18005	0.36	+0.2
3,828,411	+		IAI47_18005	0.36	+1.1
3,828,412	-		IAI47_18005	0.36	+1.1
3,828,412	-		IAI47_18005	0.36	+2.4
3,828,412	-		IAI47_18005	0.36	-0.6
3,828,412	-		IAI47_18005	0.36	+0.5
3,828,412	-		IAI47_18005	0.36	-0.6
3,828,412	-		IAI47_18005	0.36	+0.5
3,828,412	-		IAI47_18005	0.36	-0.6
3,828,412	-		IAI47_18005	0.36	-0.1
3,828,504	+		IAI47_18005	0.43	+0.3
3,828,504	+		IAI47_18005	0.43	-0.6
3,828,505	-		IAI47_18005	0.43	-1.1
3,828,505	-		IAI47_18005	0.43	+0.4
3,828,505	-		IAI47_18005	0.43	-1.1
3,828,505	-		IAI47_18005	0.43	+0.2
3,828,505	-		IAI47_18005	0.43	-1.4
3,828,523	+		IAI47_18005	0.45	-0.3
3,828,523	+		IAI47_18005	0.45	+0.6
3,828,524	-		IAI47_18005	0.45	-0.1
3,828,741	+		IAI47_18005	0.61	+0.8
3,828,741	+		IAI47_18005	0.61	+0.1
3,828,742	-		IAI47_18005	0.61	-0.9
3,828,742	-		IAI47_18005	0.61	-0.9
3,828,742	-		IAI47_18005	0.61	-1.0
3,828,742	-		IAI47_18005	0.61	-1.0
3,828,805	+		IAI47_18005	0.66	+1.2
3,828,805	+		IAI47_18005	0.66	-1.7
3,828,806	-		IAI47_18005	0.66	-0.5
3,828,930	+		IAI47_18005	0.76	-1.1
3,828,930	+		IAI47_18005	0.76	+0.0
3,828,930	+		IAI47_18005	0.76	+1.2
3,828,930	+		IAI47_18005	0.76	+1.8
3,828,931	-		IAI47_18005	0.76	+0.7
3,828,931	-		IAI47_18005	0.76	+1.6
3,828,931	-		IAI47_18005	0.76	+0.6
3,828,931	-		IAI47_18005	0.76	-0.1
3,828,931	-		IAI47_18005	0.76	-1.1
3,828,981	+		IAI47_18005	0.80	+1.1
3,828,981	+		IAI47_18005	0.80	-0.8
3,828,981	+		IAI47_18005	0.80	+0.4
3,828,981	+		IAI47_18005	0.80	+1.4
3,828,981	+		IAI47_18005	0.80	+3.8
3,828,982	-		IAI47_18005	0.80	+0.8
3,828,982	-		IAI47_18005	0.80	-3.4
3,828,982	-		IAI47_18005	0.80	-0.6
3,828,982	-		IAI47_18005	0.80	+0.5
3,828,982	-		IAI47_18005	0.80	+1.5
3,828,982	-		IAI47_18005	0.80	-0.3
3,828,982	-		IAI47_18005	0.80	+0.6
3,829,053	+		IAI47_18005	0.85	-0.1
3,829,053	+		IAI47_18005	0.85	-0.5
3,829,053	+		IAI47_18005	0.85	-0.2
3,829,054	-		IAI47_18005	0.85	+2.1
3,829,054	-		IAI47_18005	0.85	-0.2
3,829,054	-		IAI47_18005	0.85	-0.1
3,829,054	-		IAI47_18005	0.85	+0.9
3,829,054	-		IAI47_18005	0.85	+0.6
3,829,088	+		IAI47_18005	0.88	-1.3
3,829,117	+				-0.8
3,829,117	+				+0.3
3,829,118	-				+0.4
3,829,118	-				+2.4
3,829,118	-				+0.3
3,829,118	-				-0.3
3,829,147	+				-0.5
3,829,148	-				-1.5
3,829,167	+				-0.0
3,829,167	+				+0.5
3,829,168	-				+0.5
3,829,168	-				-0.8
3,829,168	-				-0.2
3,829,168	-				+1.7
3,829,234	+				+0.1
3,829,234	+				+1.1
3,829,234	+				+0.3
3,829,235	-				+1.8
3,829,235	-				-0.1
3,829,235	-				-1.1
3,829,235	-				-0.4
3,829,249	+				+0.4
3,829,249	+				+0.6
3,829,249	+				+0.5
3,829,249	+				+0.1
3,829,250	-				+1.2
3,829,290	+				-0.6
3,829,353	-				+1.5
3,829,580	+		IAI47_18010	0.20	-0.9
3,829,581	-		IAI47_18010	0.20	+1.6
3,829,581	-		IAI47_18010	0.20	-1.1
3,829,581	-		IAI47_18010	0.20	-0.8
3,829,581	-		IAI47_18010	0.20	-2.0
3,829,581	-		IAI47_18010	0.20	-0.0
3,829,581	-		IAI47_18010	0.20	+0.7
3,829,648	+		IAI47_18010	0.24	+0.1
3,829,648	+		IAI47_18010	0.24	+0.3
3,829,649	-		IAI47_18010	0.24	-1.6
3,829,649	-		IAI47_18010	0.24	+1.0
3,829,649	-		IAI47_18010	0.24	-0.2
3,829,649	-		IAI47_18010	0.24	+0.7
3,829,649	-		IAI47_18010	0.24	+1.3
3,829,649	-		IAI47_18010	0.24	-0.9
3,829,686	+		IAI47_18010	0.27	-0.8
3,829,687	-		IAI47_18010	0.27	+1.0
3,829,738	-		IAI47_18010	0.30	+3.1
3,829,806	+		IAI47_18010	0.34	+2.0
3,829,806	+		IAI47_18010	0.34	-2.2
3,829,806	+		IAI47_18010	0.34	-2.0
3,829,807	-		IAI47_18010	0.34	+0.1
3,829,807	-		IAI47_18010	0.34	+0.3
3,829,828	+		IAI47_18010	0.35	-2.4
3,829,839	+		IAI47_18010	0.36	+0.3
3,829,839	+		IAI47_18010	0.36	+0.5
3,829,839	+		IAI47_18010	0.36	-0.1
3,829,839	+		IAI47_18010	0.36	+0.1
3,829,839	+		IAI47_18010	0.36	+1.5
3,829,839	+		IAI47_18010	0.36	-0.1
3,829,840	-		IAI47_18010	0.36	-1.6
3,829,840	-		IAI47_18010	0.36	+2.4
3,829,840	-		IAI47_18010	0.36	+0.5
3,829,840	-		IAI47_18010	0.36	+0.8
3,829,840	-		IAI47_18010	0.36	-0.2
3,829,840	-		IAI47_18010	0.36	+0.8
3,829,840	-		IAI47_18010	0.36	-1.5
3,829,840	-		IAI47_18010	0.36	+1.6
3,829,854	+		IAI47_18010	0.37	+1.5
3,829,855	-		IAI47_18010	0.37	-0.6
3,829,931	+		IAI47_18010	0.42	+1.2
3,829,931	+		IAI47_18010	0.42	-0.9
3,829,931	+		IAI47_18010	0.42	-2.2
3,829,932	-		IAI47_18010	0.42	+0.5
3,829,932	-		IAI47_18010	0.42	-0.4
3,829,932	-		IAI47_18010	0.42	-0.8
3,829,956	+		IAI47_18010	0.43	-1.1
3,829,956	+		IAI47_18010	0.43	+3.0
3,829,956	+		IAI47_18010	0.43	-1.2
3,829,956	+		IAI47_18010	0.43	+0.9
3,829,956	+		IAI47_18010	0.43	-2.8
3,829,956	+		IAI47_18010	0.43	-1.1
3,829,956	+		IAI47_18010	0.43	-1.5
3,829,956	+		IAI47_18010	0.43	+0.1
3,829,957	-		IAI47_18010	0.44	+0.2
3,829,957	-		IAI47_18010	0.44	-0.1
3,829,957	-		IAI47_18010	0.44	+2.1
3,829,957	-		IAI47_18010	0.44	+0.6
3,829,957	-		IAI47_18010	0.44	+0.6
3,829,957	-		IAI47_18010	0.44	+1.2
3,829,957	-		IAI47_18010	0.44	+1.5
3,830,015	+		IAI47_18010	0.47	+0.3
3,830,015	+		IAI47_18010	0.47	+0.4
3,830,015	+		IAI47_18010	0.47	-2.3
3,830,015	+		IAI47_18010	0.47	+0.2
3,830,016	-		IAI47_18010	0.47	+0.5
3,830,027	+		IAI47_18010	0.48	-0.1
3,830,028	-		IAI47_18010	0.48	+0.9
3,830,139	+		IAI47_18010	0.55	-0.2
3,830,139	+		IAI47_18010	0.55	+0.0
3,830,140	-		IAI47_18010	0.55	-2.0
3,830,228	+		IAI47_18010	0.60	-1.6
3,830,228	+		IAI47_18010	0.60	-0.8
3,830,228	+		IAI47_18010	0.60	-0.6
3,830,228	+		IAI47_18010	0.60	+0.3
3,830,228	+		IAI47_18010	0.60	-0.4
3,830,228	+		IAI47_18010	0.60	+0.1
3,830,228	+		IAI47_18010	0.60	-1.3
3,830,228	+		IAI47_18010	0.60	+2.0
3,830,228	+		IAI47_18010	0.60	+0.3
3,830,229	-		IAI47_18010	0.61	+0.0
3,830,229	-		IAI47_18010	0.61	+0.7
3,830,229	-		IAI47_18010	0.61	+0.7
3,830,229	-		IAI47_18010	0.61	+0.8
3,830,229	-		IAI47_18010	0.61	+0.6
3,830,229	-		IAI47_18010	0.61	+1.2
3,830,234	+		IAI47_18010	0.61	-0.7
3,830,234	+		IAI47_18010	0.61	-0.1
3,830,234	+		IAI47_18010	0.61	+0.8
3,830,235	-		IAI47_18010	0.61	-0.8
3,830,235	-		IAI47_18010	0.61	-0.3
3,830,235	-		IAI47_18010	0.61	+2.1
3,830,235	-		IAI47_18010	0.61	-0.5
3,830,235	-		IAI47_18010	0.61	+2.5
3,830,235	-		IAI47_18010	0.61	+0.5
3,830,235	-		IAI47_18010	0.61	+1.6
3,830,235	-		IAI47_18010	0.61	+0.9