Strain Fitness in Pantoea sp. MT58 around IAI47_17510

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,711,924	-				+0.7
3,711,951	+				+2.3
3,711,952	-				-0.3
3,711,952	-				+0.0
3,711,952	-				-1.7
3,711,974	+				-0.7
3,711,974	+				+0.1
3,711,974	+				-0.5
3,711,974	+				-1.6
3,711,974	+				+0.0
3,711,974	+				-1.0
3,711,989	+				+0.2
3,711,989	+				-1.3
3,711,989	+				-2.2
3,711,989	+				-0.2
3,711,990	-				+0.2
3,711,990	-				-0.3
3,711,990	-				-0.6
3,711,999	+				-2.3
3,711,999	+				-0.4
3,711,999	+				-0.5
3,712,000	-				-0.7
3,712,000	-				-0.7
3,712,015	+				-0.6
3,712,016	-				-0.7
3,712,016	-				-0.5
3,712,016	-				+1.5
3,712,031	+				-1.7
3,712,031	+				+2.8
3,712,032	-				+0.7
3,712,075	+				-1.9
3,712,090	+				+0.9
3,712,090	+				+0.9
3,712,090	+				+0.8
3,712,091	-				-0.5
3,712,091	-				+0.5
3,712,091	-				-0.9
3,712,139	-		IAI47_17505	0.14	+0.7
3,712,139	-		IAI47_17505	0.14	+2.1
3,712,149	+		IAI47_17505	0.15	-1.1
3,712,149	+		IAI47_17505	0.15	-1.2
3,712,149	+		IAI47_17505	0.15	+1.9
3,712,149	+		IAI47_17505	0.15	+0.5
3,712,157	+		IAI47_17505	0.16	-0.9
3,712,157	+		IAI47_17505	0.16	+0.2
3,712,157	+		IAI47_17505	0.16	-1.0
3,712,158	-		IAI47_17505	0.16	-1.2
3,712,219	+		IAI47_17505	0.23	+0.0
3,712,219	+		IAI47_17505	0.23	+0.6
3,712,219	+		IAI47_17505	0.23	-0.1
3,712,219	+		IAI47_17505	0.23	+1.0
3,712,219	+		IAI47_17505	0.23	-0.3
3,712,220	-		IAI47_17505	0.24	+0.5
3,712,220	-		IAI47_17505	0.24	-0.0
3,712,220	-		IAI47_17505	0.24	-1.5
3,712,238	+		IAI47_17505	0.26	-2.1
3,712,238	+		IAI47_17505	0.26	+0.6
3,712,238	+		IAI47_17505	0.26	+2.2
3,712,238	+		IAI47_17505	0.26	-0.9
3,712,239	-		IAI47_17505	0.26	+1.4
3,712,239	-		IAI47_17505	0.26	-0.4
3,712,239	-		IAI47_17505	0.26	-1.2
3,712,239	-		IAI47_17505	0.26	-0.5
3,712,239	-		IAI47_17505	0.26	-0.3
3,712,375	+		IAI47_17505	0.42	+1.7
3,712,375	+		IAI47_17505	0.42	-2.2
3,712,375	+		IAI47_17505	0.42	+0.9
3,712,375	+		IAI47_17505	0.42	+0.6
3,712,375	+		IAI47_17505	0.42	+2.1
3,712,376	-		IAI47_17505	0.42	-1.3
3,712,385	+		IAI47_17505	0.43	+0.2
3,712,385	+		IAI47_17505	0.43	-1.8
3,712,424	-		IAI47_17505	0.47	-0.9
3,712,436	-		IAI47_17505	0.49	-0.9
3,712,436	-		IAI47_17505	0.49	-1.3
3,712,482	-		IAI47_17505	0.54	+1.3
3,712,482	-		IAI47_17505	0.54	-0.2
3,712,506	+		IAI47_17505	0.57	-2.7
3,712,508	+		IAI47_17505	0.57	-0.9
3,712,509	-		IAI47_17505	0.57	-1.4
3,712,509	-		IAI47_17505	0.57	+0.1
3,712,515	-		IAI47_17505	0.58	+0.9
3,712,515	-		IAI47_17505	0.58	-0.5
3,712,515	-		IAI47_17505	0.58	+1.1
3,712,536	-		IAI47_17505	0.60	-0.2
3,712,536	-		IAI47_17505	0.60	-0.6
3,712,536	-		IAI47_17505	0.60	+2.1
3,712,610	+		IAI47_17505	0.69	-2.4
3,712,628	+		IAI47_17505	0.71	-1.9
3,712,628	+		IAI47_17505	0.71	+1.7
3,712,628	+		IAI47_17505	0.71	-0.3
3,712,628	+		IAI47_17505	0.71	+0.2
3,712,628	+		IAI47_17505	0.71	+0.8
3,712,628	+		IAI47_17505	0.71	-1.0
3,712,628	+		IAI47_17505	0.71	+0.4
3,712,628	+		IAI47_17505	0.71	+0.8
3,712,629	-		IAI47_17505	0.71	-0.5
3,712,629	-		IAI47_17505	0.71	-0.6
3,712,629	-		IAI47_17505	0.71	-0.7
3,712,629	-		IAI47_17505	0.71	+0.7
3,712,629	-		IAI47_17505	0.71	+0.3
3,712,629	-		IAI47_17505	0.71	+0.3
3,712,629	-		IAI47_17505	0.71	-0.1
3,712,629	-		IAI47_17505	0.71	-0.3
3,712,629	-		IAI47_17505	0.71	-0.2
3,712,629	-		IAI47_17505	0.71	+0.1
3,712,661	+		IAI47_17505	0.75	-0.5
3,712,662	-		IAI47_17505	0.75	+1.3
3,712,662	-		IAI47_17505	0.75	+2.6
3,712,688	+		IAI47_17505	0.78	+0.5
3,712,688	+		IAI47_17505	0.78	+1.2
3,712,688	+		IAI47_17505	0.78	-0.2
3,712,688	+		IAI47_17505	0.78	-0.7
3,712,689	-		IAI47_17505	0.78	-0.3
3,712,689	-		IAI47_17505	0.78	-0.1
3,712,722	-		IAI47_17505	0.82	-0.9
3,712,771	+		IAI47_17505	0.87	-1.5
3,712,867	+				+0.3
3,712,867	+				-0.4
3,712,868	-				-1.1
3,712,877	+				+1.7
3,712,877	+				-0.5
3,712,899	+				+1.8
3,712,899	+				+0.5
3,712,899	+				-0.5
3,712,899	+				-1.1
3,712,899	+				-0.3
3,712,899	+				+1.7
3,712,899	+				-0.3
3,712,899	+				-1.0
3,712,899	+				-0.9
3,712,900	-				+1.7
3,712,900	-				-1.0
3,712,900	-				-0.5
3,712,900	-				+1.9
3,712,900	-				-1.0
3,712,900	-				-0.3
3,712,900	-				-0.6
3,712,900	-				-0.8
3,712,900	-				+0.1
3,712,900	-				-0.0
3,712,900	-				+1.7
3,712,900	-				-1.1
3,712,900	-				-0.1
3,712,906	+				+1.2
3,712,906	+				-0.7
3,712,906	+				-1.9
3,712,906	+				-0.7
3,712,906	+				-0.1
3,712,907	-				-0.5
3,712,910	+				-1.4
3,712,910	+				+0.7
3,712,920	-		IAI47_17510	0.10	+0.2
3,712,950	+		IAI47_17510	0.20	+1.3
3,713,007	+		IAI47_17510	0.40	+0.9
3,713,008	-		IAI47_17510	0.40	+1.2
3,713,053	+		IAI47_17510	0.55	+1.4
3,713,053	+		IAI47_17510	0.55	+0.4
3,713,094	+		IAI47_17510	0.69	+0.2
3,713,094	+		IAI47_17510	0.69	-0.2
3,713,094	+		IAI47_17510	0.69	+2.0
3,713,094	+		IAI47_17510	0.69	+1.8
3,713,094	+		IAI47_17510	0.69	-0.0
3,713,094	+		IAI47_17510	0.69	+0.7
3,713,095	-		IAI47_17510	0.70	-2.3
3,713,095	-		IAI47_17510	0.70	+2.7
3,713,095	-		IAI47_17510	0.70	+1.7
3,713,095	-		IAI47_17510	0.70	-0.7
3,713,095	-		IAI47_17510	0.70	-1.3
3,713,095	-		IAI47_17510	0.70	+0.5
3,713,095	-		IAI47_17510	0.70	-0.4
3,713,109	+		IAI47_17510	0.74	-0.6
3,713,109	+		IAI47_17510	0.74	+0.6
3,713,109	+		IAI47_17510	0.74	-0.3
3,713,148	+		IAI47_17510	0.88	-0.1
3,713,173	+				-1.0
3,713,173	+				-0.5
3,713,173	+				+2.0
3,713,173	+				+1.0
3,713,173	+				-0.3
3,713,173	+				+0.2
3,713,174	-				-0.2
3,713,174	-				-0.7
3,713,174	-				-1.2
3,713,174	-				-0.4
3,713,174	-				+0.7
3,713,177	+				-0.6
3,713,177	+				-0.2
3,713,177	+				+0.3
3,713,177	+				+1.0
3,713,177	+				-0.4
3,713,177	+				-0.5
3,713,177	+				-0.3
3,713,177	+				-1.4
3,713,177	+				+1.8
3,713,177	+				-0.3
3,713,177	+				+1.9
3,713,178	-				-0.1
3,713,178	-				+2.1
3,713,178	-				-0.3
3,713,178	-				+0.5
3,713,178	-				-0.3
3,713,178	-				-0.1
3,713,178	-				+1.3
3,713,178	-				-0.8
3,713,178	-				+1.7
3,713,178	-				-0.9
3,713,178	-				-1.6
3,713,178	-				-0.2
3,713,178	-				+0.4
3,713,178	-				+0.6
3,713,181	+				+0.0
3,713,181	+				-2.2
3,713,181	+				-0.5
3,713,181	+				+0.9
3,713,182	-				-0.9
3,713,182	-				-2.5
3,713,182	-				+1.4
3,713,182	-				+2.7
3,713,227	+				-2.0
3,713,292	+				-0.0
3,713,292	+				-0.5
3,713,292	+				+0.9
3,713,292	+				-0.9
3,713,292	+				-0.2
3,713,292	+				-1.3
3,713,292	+				-0.0
3,713,292	+				-2.4
3,713,292	+				+0.4
3,713,292	+				-1.2
3,713,292	+				+0.6
3,713,292	+				-0.2
3,713,293	-				+0.4
3,713,293	-				+0.1
3,713,293	-				-0.9
3,713,293	-				-1.3
3,713,293	-				-1.1
3,713,293	-				+1.0
3,713,293	-				+2.0
3,713,293	-				+0.4
3,713,293	-				+0.4
3,713,293	-				-1.8
3,713,293	-				+0.8
3,713,293	-				+1.3
3,713,293	-				+0.9
3,713,293	-				+3.0
3,713,293	-				-0.5
3,713,293	-				+2.9
3,713,293	-				+1.0
3,713,293	-				+0.3
3,713,293	-				-0.7
3,713,293	-				-0.1
3,713,293	-				+0.1
3,713,367	+		IAI47_17515	0.14	-0.1
3,713,367	+		IAI47_17515	0.14	+2.9
3,713,367	+		IAI47_17515	0.14	+2.2
3,713,367	+		IAI47_17515	0.14	-0.2
3,713,368	-		IAI47_17515	0.14	+1.5
3,713,368	-		IAI47_17515	0.14	-2.0
3,713,368	-		IAI47_17515	0.14	-2.1
3,713,368	-		IAI47_17515	0.14	+0.4
3,713,368	-		IAI47_17515	0.14	-0.2
3,713,418	+		IAI47_17515	0.19	+1.1
3,713,418	+		IAI47_17515	0.19	-0.2
3,713,418	+		IAI47_17515	0.19	-1.5
3,713,418	+		IAI47_17515	0.19	+0.0
3,713,418	+		IAI47_17515	0.19	+1.4
3,713,419	-		IAI47_17515	0.19	-1.0
3,713,419	-		IAI47_17515	0.19	-0.4
3,713,419	-		IAI47_17515	0.19	-1.1
3,713,419	-		IAI47_17515	0.19	-0.9
3,713,419	-		IAI47_17515	0.19	-1.3
3,713,419	-		IAI47_17515	0.19	+0.5
3,713,435	-		IAI47_17515	0.20	-0.3
3,713,435	-		IAI47_17515	0.20	+0.2
3,713,440	+		IAI47_17515	0.21	-0.5
3,713,446	+		IAI47_17515	0.21	-0.5
3,713,446	+		IAI47_17515	0.21	-0.7
3,713,446	+		IAI47_17515	0.21	-0.3
3,713,446	+		IAI47_17515	0.21	-1.2
3,713,447	-		IAI47_17515	0.21	-0.1
3,713,447	-		IAI47_17515	0.21	+1.3
3,713,447	-		IAI47_17515	0.21	-2.0
3,713,447	-		IAI47_17515	0.21	+0.7
3,713,447	-		IAI47_17515	0.21	+0.3
3,713,447	-		IAI47_17515	0.21	+0.9
3,713,447	-		IAI47_17515	0.21	-1.0
3,713,534	-		IAI47_17515	0.29	-0.9
3,713,576	-		IAI47_17515	0.33	+2.9
3,713,679	+		IAI47_17515	0.43	-2.0
3,713,679	+		IAI47_17515	0.43	+0.6
3,713,680	-		IAI47_17515	0.43	+0.3
3,713,707	+		IAI47_17515	0.45	-0.0
3,713,707	+		IAI47_17515	0.45	+1.1
3,713,707	+		IAI47_17515	0.45	+1.0
3,713,707	+		IAI47_17515	0.45	-0.8
3,713,708	-		IAI47_17515	0.45	+1.8
3,713,716	+		IAI47_17515	0.46	-0.0
3,713,717	-		IAI47_17515	0.46	+0.8
3,713,717	-		IAI47_17515	0.46	-0.7
3,713,717	-		IAI47_17515	0.46	-1.4
3,713,737	+		IAI47_17515	0.48	+0.9
3,713,811	+		IAI47_17515	0.55	-1.0
3,713,811	+		IAI47_17515	0.55	+0.7
3,713,811	+		IAI47_17515	0.55	-1.4
3,713,811	+		IAI47_17515	0.55	+0.5
3,713,811	+		IAI47_17515	0.55	-1.1
3,713,811	+		IAI47_17515	0.55	+0.5
3,713,811	+		IAI47_17515	0.55	-0.9
3,713,811	+		IAI47_17515	0.55	+0.9
3,713,811	+		IAI47_17515	0.55	-0.7
3,713,811	+		IAI47_17515	0.55	+1.7
3,713,811	+		IAI47_17515	0.55	+0.4
3,713,812	-		IAI47_17515	0.55	+0.0
3,713,812	-		IAI47_17515	0.55	-2.6
3,713,812	-		IAI47_17515	0.55	+0.3
3,713,812	-		IAI47_17515	0.55	+0.4
3,713,812	-		IAI47_17515	0.55	+0.2
3,713,812	-		IAI47_17515	0.55	-2.3
3,713,924	-		IAI47_17515	0.65	+0.4
3,713,955	+		IAI47_17515	0.68	+1.2
3,713,956	-		IAI47_17515	0.68	+0.0
3,713,956	-		IAI47_17515	0.68	+0.1
3,713,956	-		IAI47_17515	0.68	+0.4
3,714,006	+		IAI47_17515	0.72	-0.3
3,714,006	+		IAI47_17515	0.72	-1.2
3,714,007	-		IAI47_17515	0.73	+0.8
3,714,007	-		IAI47_17515	0.73	+0.1
3,714,051	+		IAI47_17515	0.77	-0.8
3,714,051	+		IAI47_17515	0.77	-0.5
3,714,052	-		IAI47_17515	0.77	-0.2
3,714,052	-		IAI47_17515	0.77	-2.3
3,714,059	-		IAI47_17515	0.77	+1.0
3,714,070	+		IAI47_17515	0.78	+0.5
3,714,071	-		IAI47_17515	0.78	-2.3
3,714,071	-		IAI47_17515	0.78	+0.9
3,714,099	+		IAI47_17515	0.81	+1.4
3,714,099	+		IAI47_17515	0.81	+2.8
3,714,099	+		IAI47_17515	0.81	-0.0
3,714,099	+		IAI47_17515	0.81	-0.2
3,714,099	+		IAI47_17515	0.81	+1.5
3,714,099	+		IAI47_17515	0.81	+2.1
3,714,100	-		IAI47_17515	0.81	+0.2
3,714,100	-		IAI47_17515	0.81	+0.5
3,714,100	-		IAI47_17515	0.81	+2.0
3,714,100	-		IAI47_17515	0.81	-0.3
3,714,100	-		IAI47_17515	0.81	+1.8
3,714,100	-		IAI47_17515	0.81	-0.5
3,714,100	-		IAI47_17515	0.81	-0.5
3,714,100	-		IAI47_17515	0.81	-0.7
3,714,106	+		IAI47_17515	0.82	-1.2
3,714,107	-		IAI47_17515	0.82	+0.1
3,714,123	+		IAI47_17515	0.83	-0.9
3,714,123	+		IAI47_17515	0.83	+1.0
3,714,123	+		IAI47_17515	0.83	+0.6
3,714,124	-		IAI47_17515	0.83	-1.2
3,714,135	+		IAI47_17515	0.84	-1.4
3,714,135	+		IAI47_17515	0.84	-1.7
3,714,135	+		IAI47_17515	0.84	-1.5
3,714,135	+		IAI47_17515	0.84	-1.3
3,714,136	-		IAI47_17515	0.84	+0.2
3,714,136	-		IAI47_17515	0.84	+3.0
3,714,136	-		IAI47_17515	0.84	+0.4
3,714,136	-		IAI47_17515	0.84	-0.2
3,714,136	-		IAI47_17515	0.84	+1.6
3,714,136	-		IAI47_17515	0.84	-0.8
3,714,137	+		IAI47_17515	0.84	-0.3
3,714,137	+		IAI47_17515	0.84	-0.8
3,714,137	+		IAI47_17515	0.84	+1.6
3,714,137	+		IAI47_17515	0.84	+0.2