Strain Fitness in Pantoea sp. MT58 around IAI47_17230

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,653,017	+		IAI47_17225	0.51	-0.5
3,653,017	+		IAI47_17225	0.51	+1.2
3,653,017	+		IAI47_17225	0.51	+0.2
3,653,102	+		IAI47_17225	0.56	-1.9
3,653,103	-		IAI47_17225	0.56	+0.5
3,653,103	-		IAI47_17225	0.56	-1.2
3,653,103	-		IAI47_17225	0.56	+0.4
3,653,103	-		IAI47_17225	0.56	+0.1
3,653,115	+		IAI47_17225	0.57	-0.7
3,653,115	+		IAI47_17225	0.57	-0.5
3,653,115	+		IAI47_17225	0.57	+0.2
3,653,116	-		IAI47_17225	0.57	+0.8
3,653,151	+		IAI47_17225	0.59	+0.2
3,653,151	+		IAI47_17225	0.59	+1.4
3,653,151	+		IAI47_17225	0.59	+0.7
3,653,152	-		IAI47_17225	0.59	-1.0
3,653,239	+		IAI47_17225	0.64	-0.1
3,653,240	-		IAI47_17225	0.64	+0.7
3,653,240	-		IAI47_17225	0.64	+1.1
3,653,240	-		IAI47_17225	0.64	+0.8
3,653,259	+		IAI47_17225	0.65	+0.5
3,653,259	+		IAI47_17225	0.65	+0.1
3,653,259	+		IAI47_17225	0.65	+0.9
3,653,260	-		IAI47_17225	0.65	+0.9
3,653,260	-		IAI47_17225	0.65	-0.1
3,653,260	-		IAI47_17225	0.65	+1.6
3,653,271	+		IAI47_17225	0.65	-0.5
3,653,271	+		IAI47_17225	0.65	-0.5
3,653,271	+		IAI47_17225	0.65	+1.6
3,653,271	+		IAI47_17225	0.65	-0.2
3,653,305	+		IAI47_17225	0.67	-1.1
3,653,347	+		IAI47_17225	0.70	+0.8
3,653,347	+		IAI47_17225	0.70	+0.8
3,653,347	+		IAI47_17225	0.70	+1.0
3,653,347	+		IAI47_17225	0.70	-0.5
3,653,348	-		IAI47_17225	0.70	+0.2
3,653,348	-		IAI47_17225	0.70	+2.7
3,653,348	-		IAI47_17225	0.70	-2.1
3,653,348	-		IAI47_17225	0.70	-2.2
3,653,391	+		IAI47_17225	0.72	-0.0
3,653,391	+		IAI47_17225	0.72	+0.4
3,653,391	+		IAI47_17225	0.72	-0.7
3,653,391	+		IAI47_17225	0.72	-0.9
3,653,392	-		IAI47_17225	0.72	-1.6
3,653,392	-		IAI47_17225	0.72	-0.6
3,653,392	-		IAI47_17225	0.72	+1.4
3,653,392	-		IAI47_17225	0.72	-0.4
3,653,404	-		IAI47_17225	0.73	-0.3
3,653,565	+		IAI47_17225	0.82	-0.2
3,653,565	+		IAI47_17225	0.82	+1.4
3,653,565	+		IAI47_17225	0.82	+0.0
3,653,565	+		IAI47_17225	0.82	+0.2
3,653,565	+		IAI47_17225	0.82	+0.2
3,653,565	+		IAI47_17225	0.82	-2.1
3,653,565	+		IAI47_17225	0.82	-1.3
3,653,565	+		IAI47_17225	0.82	-2.8
3,653,565	+		IAI47_17225	0.82	+1.0
3,653,565	+		IAI47_17225	0.82	+0.8
3,653,565	+		IAI47_17225	0.82	+2.5
3,653,566	-		IAI47_17225	0.82	-0.0
3,653,566	-		IAI47_17225	0.82	-0.4
3,653,566	-		IAI47_17225	0.82	+0.3
3,653,566	-		IAI47_17225	0.82	+1.2
3,653,566	-		IAI47_17225	0.82	-0.5
3,653,566	-		IAI47_17225	0.82	-0.1
3,653,566	-		IAI47_17225	0.82	+2.0
3,653,566	-		IAI47_17225	0.82	+0.6
3,653,566	-		IAI47_17225	0.82	-0.5
3,653,566	-		IAI47_17225	0.82	-0.1
3,653,566	-		IAI47_17225	0.82	+0.3
3,653,569	+		IAI47_17225	0.82	-1.5
3,653,569	+		IAI47_17225	0.82	-0.3
3,653,569	+		IAI47_17225	0.82	+1.2
3,653,570	-		IAI47_17225	0.82	+0.4
3,653,582	+		IAI47_17225	0.83	+0.4
3,653,582	+		IAI47_17225	0.83	-0.4
3,653,582	+		IAI47_17225	0.83	+1.1
3,653,583	-		IAI47_17225	0.83	-1.7
3,653,599	-		IAI47_17225	0.84	+0.7
3,653,599	-		IAI47_17225	0.84	-1.2
3,653,656	+		IAI47_17225	0.87	-0.8
3,653,656	+		IAI47_17225	0.87	+0.4
3,653,656	+		IAI47_17225	0.87	+1.7
3,653,656	+		IAI47_17225	0.87	-0.1
3,653,656	+		IAI47_17225	0.87	-2.1
3,653,657	-		IAI47_17225	0.87	-0.6
3,653,695	+		IAI47_17225	0.90	+0.4
3,653,695	+		IAI47_17225	0.90	+1.0
3,653,696	-		IAI47_17225	0.90	-1.1
3,653,696	-		IAI47_17225	0.90	-0.6
3,653,696	-		IAI47_17225	0.90	-2.7
3,653,696	-		IAI47_17225	0.90	+0.7
3,653,696	-		IAI47_17225	0.90	-1.1
3,653,696	-		IAI47_17225	0.90	-0.2
3,653,719	+				+0.4
3,653,719	+				-1.4
3,653,719	+				-0.4
3,653,719	+				-0.4
3,653,719	+				+3.1
3,653,719	+				+0.0
3,653,719	+				-1.1
3,653,719	+				+0.6
3,653,719	+				-1.9
3,653,719	+				-0.1
3,653,720	-				+0.3
3,653,720	-				+0.6
3,653,720	-				-1.2
3,653,720	-				-0.7
3,653,720	-				-0.4
3,653,720	-				-0.3
3,653,720	-				+0.2
3,653,720	-				-0.7
3,653,720	-				+0.8
3,653,720	-				-2.1
3,653,720	-				+0.2
3,653,725	+				-0.0
3,653,725	+				-0.7
3,653,725	+				+0.2
3,653,726	-				+1.5
3,653,726	-				-0.2
3,653,726	-				-1.3
3,653,726	-				+0.9
3,653,726	-				+0.2
3,653,776	+				-0.2
3,653,776	+				+1.6
3,653,776	+				+0.1
3,653,776	+				+1.1
3,653,777	-				+0.3
3,653,777	-				-0.6
3,653,777	-				-2.0
3,653,777	-				-1.7
3,653,777	-				-0.5
3,653,777	-				+0.9
3,653,777	-				-0.2
3,653,777	-				+0.3
3,653,777	-				+0.4
3,653,827	+				-0.1
3,653,827	+				-2.2
3,653,827	+				+0.8
3,653,828	-				+0.9
3,653,828	-				-0.4
3,653,857	+				-0.8
3,653,857	+				+1.0
3,653,858	-				-0.8
3,653,858	-				-1.2
3,653,858	-				+1.1
3,653,872	+				-0.8
3,653,872	+				-0.2
3,653,873	-				+0.1
3,653,873	-				-2.0
3,653,873	-				+0.3
3,653,873	-				-1.4
3,653,878	+				+0.1
3,653,879	-				+2.1
3,653,948	+				+1.1
3,653,948	+				+2.2
3,653,949	-				+0.8
3,653,949	-				-0.3
3,653,982	+				+0.4
3,653,982	+				+0.6
3,653,992	+				-1.2
3,653,992	+				-1.1
3,653,992	+				-0.7
3,653,993	-				-1.2
3,654,137	+		IAI47_17230	0.30	+0.1
3,654,148	+		IAI47_17230	0.32	-1.2
3,654,196	+		IAI47_17230	0.42	-1.0
3,654,196	+		IAI47_17230	0.42	+2.0
3,654,196	+		IAI47_17230	0.42	-0.1
3,654,196	+		IAI47_17230	0.42	-0.8
3,654,197	-		IAI47_17230	0.42	+0.5
3,654,197	-		IAI47_17230	0.42	+0.9
3,654,197	-		IAI47_17230	0.42	-1.8
3,654,197	-		IAI47_17230	0.42	-0.9
3,654,227	+		IAI47_17230	0.49	-1.2
3,654,227	+		IAI47_17230	0.49	+1.6
3,654,228	-		IAI47_17230	0.49	+0.4
3,654,228	-		IAI47_17230	0.49	+0.8
3,654,228	-		IAI47_17230	0.49	+0.3
3,654,228	-		IAI47_17230	0.49	+0.2
3,654,228	-		IAI47_17230	0.49	+0.7
3,654,343	+		IAI47_17230	0.72	-0.6
3,654,343	+		IAI47_17230	0.72	-1.7
3,654,374	+		IAI47_17230	0.79	+1.0
3,654,374	+		IAI47_17230	0.79	-1.9
3,654,374	+		IAI47_17230	0.79	-2.4
3,654,374	+		IAI47_17230	0.79	-0.9
3,654,375	-		IAI47_17230	0.79	-0.2
3,654,375	-		IAI47_17230	0.79	+2.6
3,654,375	-		IAI47_17230	0.79	-0.0
3,654,375	-		IAI47_17230	0.79	+2.3
3,654,424	+		IAI47_17230	0.89	+0.9
3,654,424	+		IAI47_17230	0.89	-0.8
3,654,424	+		IAI47_17230	0.89	+0.6
3,654,424	+		IAI47_17230	0.89	-0.8
3,654,424	+		IAI47_17230	0.89	-0.3
3,654,424	+		IAI47_17230	0.89	-1.1
3,654,424	+		IAI47_17230	0.89	+0.6
3,654,424	+		IAI47_17230	0.89	+0.2
3,654,424	+		IAI47_17230	0.89	-2.2
3,654,424	+		IAI47_17230	0.89	+0.8
3,654,424	+		IAI47_17230	0.89	+0.0
3,654,424	+		IAI47_17230	0.89	-2.0
3,654,424	+		IAI47_17230	0.89	-0.0
3,654,424	+		IAI47_17230	0.89	+1.0
3,654,424	+		IAI47_17230	0.89	-1.1
3,654,425	-		IAI47_17230	0.89	+0.2
3,654,425	-		IAI47_17230	0.89	+0.5
3,654,425	-		IAI47_17230	0.89	-0.3
3,654,425	-		IAI47_17230	0.89	-0.2
3,654,425	-		IAI47_17230	0.89	-2.2
3,654,425	-		IAI47_17230	0.89	-0.7
3,654,425	-		IAI47_17230	0.89	-0.1
3,654,425	-		IAI47_17230	0.89	-0.4
3,654,425	-		IAI47_17230	0.89	-0.7
3,654,442	+				-0.4
3,654,443	-				-0.5
3,654,443	-				-0.8
3,654,443	-				+0.6
3,654,443	-				+0.2
3,654,458	+				-0.0
3,654,458	+				-0.9
3,654,459	-				+0.0
3,654,459	-				+0.5
3,654,459	-				-0.8
3,654,476	+				-0.1
3,654,476	+				-1.5
3,654,477	-				-1.8
3,654,481	+				-0.6
3,654,481	+				+0.3
3,654,482	-				-0.9
3,654,482	-				-0.9
3,654,482	-				-0.6
3,654,482	-				+1.6
3,654,565	+		IAI47_17235	0.13	-1.2
3,654,566	-		IAI47_17235	0.13	-0.9
3,654,566	-		IAI47_17235	0.13	+0.4
3,654,644	-		IAI47_17235	0.26	-1.2
3,654,644	-		IAI47_17235	0.26	+0.0
3,654,679	+		IAI47_17235	0.31	-1.1
3,654,679	+		IAI47_17235	0.31	-1.5
3,654,680	-		IAI47_17235	0.31	+0.2
3,654,680	-		IAI47_17235	0.31	+0.0
3,654,680	-		IAI47_17235	0.31	-0.8
3,654,686	+		IAI47_17235	0.32	-0.7
3,654,788	+		IAI47_17235	0.48	-1.2
3,654,789	-		IAI47_17235	0.48	-1.4
3,654,789	-		IAI47_17235	0.48	-0.5
3,654,789	-		IAI47_17235	0.48	-2.1
3,654,790	+		IAI47_17235	0.48	+0.6
3,654,790	+		IAI47_17235	0.48	-0.0
3,654,790	+		IAI47_17235	0.48	-1.3
3,654,791	-		IAI47_17235	0.48	-0.4
3,654,791	-		IAI47_17235	0.48	-0.3
3,654,847	+		IAI47_17235	0.57	-0.4
3,654,885	+		IAI47_17235	0.63	-0.5
3,654,885	+		IAI47_17235	0.63	-1.5
3,654,886	-		IAI47_17235	0.63	-0.6
3,654,886	-		IAI47_17235	0.63	-0.9
3,654,886	-		IAI47_17235	0.63	-0.9
3,654,886	-		IAI47_17235	0.63	-1.0
3,654,886	-		IAI47_17235	0.63	-1.0
3,654,886	-		IAI47_17235	0.63	-0.6
3,654,889	+		IAI47_17235	0.64	-2.4
3,654,889	+		IAI47_17235	0.64	+0.3
3,654,889	+		IAI47_17235	0.64	-1.1
3,654,889	+		IAI47_17235	0.64	-1.0
3,654,889	+		IAI47_17235	0.64	+1.7
3,654,889	+		IAI47_17235	0.64	+0.0
3,654,889	+		IAI47_17235	0.64	-0.9
3,654,889	+		IAI47_17235	0.64	-1.6
3,654,890	-		IAI47_17235	0.64	-3.0
3,654,890	-		IAI47_17235	0.64	-0.4
3,654,890	-		IAI47_17235	0.64	+1.1
3,654,890	-		IAI47_17235	0.64	-1.1
3,654,890	-		IAI47_17235	0.64	-2.9
3,654,913	+		IAI47_17235	0.67	-1.6
3,654,913	+		IAI47_17235	0.67	-0.8
3,654,913	+		IAI47_17235	0.67	-0.1
3,654,914	-		IAI47_17235	0.68	-0.5
3,654,914	-		IAI47_17235	0.68	+0.7
3,654,914	-		IAI47_17235	0.68	-0.6
3,654,914	-		IAI47_17235	0.68	+0.9
3,654,934	-		IAI47_17235	0.71	-0.3
3,654,934	-		IAI47_17235	0.71	-1.2
3,654,934	-		IAI47_17235	0.71	-0.0
3,654,934	-		IAI47_17235	0.71	-1.4
3,654,934	-		IAI47_17235	0.71	+0.5
3,655,015	-		IAI47_17235	0.83	-0.1
3,655,015	-		IAI47_17235	0.83	+0.1
3,655,015	-		IAI47_17235	0.83	-0.6
3,655,043	+		IAI47_17235	0.88	-1.3
3,655,043	+		IAI47_17235	0.88	-1.0
3,655,044	-		IAI47_17235	0.88	-0.5
3,655,044	-		IAI47_17235	0.88	-0.4
3,655,044	-		IAI47_17235	0.88	+0.8
3,655,047	+		IAI47_17235	0.88	-1.2
3,655,048	-		IAI47_17235	0.88	-1.4
3,655,048	-		IAI47_17235	0.88	-0.2
3,655,048	-		IAI47_17235	0.88	+0.5
3,655,048	-		IAI47_17235	0.88	-1.4
3,655,048	-		IAI47_17235	0.88	-1.6
3,655,048	-		IAI47_17235	0.88	+0.4
3,655,048	-		IAI47_17235	0.88	+0.4
3,655,070	+				-1.3
3,655,070	+				-0.9
3,655,070	+				-0.9
3,655,070	+				-0.8
3,655,070	+				-0.4
3,655,070	+				-1.5
3,655,071	-				-0.4
3,655,071	-				+0.0
3,655,071	-				-0.8
3,655,071	-				-1.0
3,655,071	-				-0.4
3,655,093	-				-0.3
3,655,160	+				+0.4
3,655,161	-				-1.4
3,655,223	+				+1.1
3,655,223	+				+1.2
3,655,224	-				-0.6
3,655,224	-				+1.3
3,655,224	-				-1.8
3,655,224	-				-0.6
3,655,224	-				+2.5
3,655,224	-				+0.1
3,655,224	-				+0.7
3,655,227	+				+0.8
3,655,227	+				+0.0
3,655,227	+				-0.8
3,655,228	-				+0.6
3,655,228	-				+0.5
3,655,305	-				+2.0
3,655,309	+				-0.0
3,655,309	+				-0.9
3,655,309	+				+0.1
3,655,309	+				+0.5
3,655,310	-				+0.6
3,655,310	-				+0.3
3,655,310	-				-0.4
3,655,340	+				-1.0
3,655,341	-				-0.8
3,655,394	+				-1.8
3,655,395	-				+0.2
3,655,433	-				-0.8