Strain Fitness in Pantoea sp. MT58 around IAI47_13000

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,748,924	+				-0.6
2,748,924	+				-0.3
2,748,932	+				-1.3
2,748,933	-				-0.4
2,748,938	-				-0.6
2,748,944	-				-2.1
2,749,032	+				+0.3
2,749,032	+				-1.6
2,749,032	+				-0.4
2,749,032	+				-0.6
2,749,032	+				+1.9
2,749,033	-				+1.9
2,749,033	-				-1.8
2,749,033	-				+1.4
2,749,033	-				-0.5
2,749,040	+				-0.4
2,749,055	+				-0.1
2,749,055	+				-0.2
2,749,055	+				+0.7
2,749,055	+				-1.3
2,749,055	+				-0.6
2,749,055	+				-1.0
2,749,055	+				+0.5
2,749,055	+				-1.1
2,749,055	+				-1.9
2,749,055	+				-1.3
2,749,055	+				+1.6
2,749,055	+				+2.9
2,749,055	+				+1.2
2,749,055	+				+0.4
2,749,056	-				+1.0
2,749,056	-				-1.8
2,749,056	-				-2.1
2,749,056	-				+0.3
2,749,056	-				+0.4
2,749,056	-				-0.5
2,749,056	-				+0.4
2,749,056	-				+2.9
2,749,056	-				+0.2
2,749,086	+				-0.6
2,749,087	-				+0.2
2,749,094	+				+0.8
2,749,095	-				+0.4
2,749,099	-				+0.9
2,749,099	-				+2.1
2,749,112	+				-0.3
2,749,113	-				+0.5
2,749,127	+				+1.1
2,749,130	+				+0.2
2,749,130	+				-0.3
2,749,130	+				+1.8
2,749,130	+				+2.4
2,749,130	+				+0.1
2,749,130	+				+0.6
2,749,130	+				+1.5
2,749,130	+				-0.4
2,749,131	-				+3.0
2,749,131	-				-0.2
2,749,131	-				+0.3
2,749,131	-				-0.1
2,749,131	-				+0.1
2,749,131	-				+1.1
2,749,134	+				+0.7
2,749,135	-				-0.0
2,749,135	-				+1.7
2,749,156	-				+0.6
2,749,172	+				+1.5
2,749,173	-				+0.1
2,749,173	-				-1.5
2,749,173	-				-0.8
2,749,183	+				+0.3
2,749,183	+				-0.6
2,749,183	+				+2.1
2,749,183	+				-0.5
2,749,183	+				+0.9
2,749,183	+				+1.1
2,749,183	+				+1.2
2,749,183	+				-0.6
2,749,183	+				-0.7
2,749,183	+				-2.5
2,749,183	+				+0.1
2,749,184	-				-1.3
2,749,184	-				-1.2
2,749,184	-				-2.5
2,749,184	-				-0.9
2,749,184	-				-0.8
2,749,184	-				-0.0
2,749,244	+		IAI47_12995	0.13	-2.4
2,749,245	-		IAI47_12995	0.13	-0.1
2,749,293	+		IAI47_12995	0.20	+1.8
2,749,420	+		IAI47_12995	0.37	-0.7
2,749,420	+		IAI47_12995	0.37	+1.3
2,749,420	+		IAI47_12995	0.37	-1.9
2,749,420	+		IAI47_12995	0.37	-0.1
2,749,421	-		IAI47_12995	0.37	+1.4
2,749,421	-		IAI47_12995	0.37	-0.1
2,749,421	-		IAI47_12995	0.37	+0.8
2,749,422	+		IAI47_12995	0.37	+1.6
2,749,422	+		IAI47_12995	0.37	-0.8
2,749,422	+		IAI47_12995	0.37	+1.2
2,749,422	+		IAI47_12995	0.37	+0.1
2,749,423	-		IAI47_12995	0.37	-1.0
2,749,423	-		IAI47_12995	0.37	-2.1
2,749,423	-		IAI47_12995	0.37	+3.1
2,749,423	-		IAI47_12995	0.37	+0.5
2,749,423	-		IAI47_12995	0.37	+1.4
2,749,423	-		IAI47_12995	0.37	-1.9
2,749,423	-		IAI47_12995	0.37	+1.6
2,749,549	+		IAI47_12995	0.55	-1.1
2,749,549	+		IAI47_12995	0.55	-1.7
2,749,550	-		IAI47_12995	0.55	-0.9
2,749,695	+		IAI47_12995	0.75	+0.5
2,749,695	+		IAI47_12995	0.75	+1.8
2,749,695	+		IAI47_12995	0.75	+0.4
2,749,696	-		IAI47_12995	0.75	+0.5
2,749,696	-		IAI47_12995	0.75	+1.4
2,749,764	+		IAI47_12995	0.84	+1.3
2,749,764	+		IAI47_12995	0.84	-0.6
2,749,764	+		IAI47_12995	0.84	-0.7
2,749,765	-		IAI47_12995	0.84	-1.6
2,749,765	-		IAI47_12995	0.84	+0.2
2,749,786	+		IAI47_12995	0.87	-2.6
2,749,786	+		IAI47_12995	0.87	-0.4
2,749,786	+		IAI47_12995	0.87	-0.1
2,749,787	-		IAI47_12995	0.87	+0.9
2,749,787	-		IAI47_12995	0.87	+0.6
2,749,787	-		IAI47_12995	0.87	-0.9
2,749,787	-		IAI47_12995	0.87	+0.9
2,749,787	-		IAI47_12995	0.87	-0.7
2,749,833	+				-0.4
2,749,834	-				-1.0
2,749,865	-				-0.7
2,749,876	+				-0.3
2,749,876	+				-0.8
2,749,876	+				-0.9
2,749,877	-				+0.9
2,749,907	+				+0.4
2,749,907	+				-2.4
2,749,984	+		IAI47_13000	0.12	+0.2
2,749,985	-		IAI47_13000	0.12	+0.5
2,749,985	-		IAI47_13000	0.12	+1.3
2,749,999	+		IAI47_13000	0.14	+0.9
2,749,999	+		IAI47_13000	0.14	+0.3
2,749,999	+		IAI47_13000	0.14	-0.2
2,749,999	+		IAI47_13000	0.14	-0.0
2,750,000	-		IAI47_13000	0.14	-1.3
2,750,000	-		IAI47_13000	0.14	-1.9
2,750,000	-		IAI47_13000	0.14	-2.2
2,750,000	-		IAI47_13000	0.14	-0.8
2,750,000	-		IAI47_13000	0.14	+0.4
2,750,000	-		IAI47_13000	0.14	-0.4
2,750,000	-		IAI47_13000	0.14	+0.9
2,750,000	-		IAI47_13000	0.14	+2.2
2,750,013	+		IAI47_13000	0.16	+0.1
2,750,014	-		IAI47_13000	0.16	-0.7
2,750,014	-		IAI47_13000	0.16	-0.6
2,750,014	-		IAI47_13000	0.16	+1.3
2,750,014	-		IAI47_13000	0.16	-2.8
2,750,058	+		IAI47_13000	0.22	-0.9
2,750,058	+		IAI47_13000	0.22	-1.3
2,750,058	+		IAI47_13000	0.22	-0.6
2,750,058	+		IAI47_13000	0.22	+1.1
2,750,058	+		IAI47_13000	0.22	+0.4
2,750,059	-		IAI47_13000	0.23	-0.2
2,750,059	-		IAI47_13000	0.23	+0.8
2,750,158	+		IAI47_13000	0.36	+0.1
2,750,160	+		IAI47_13000	0.36	+0.6
2,750,203	+		IAI47_13000	0.42	+1.6
2,750,203	+		IAI47_13000	0.42	-0.3
2,750,203	+		IAI47_13000	0.42	-0.9
2,750,203	+		IAI47_13000	0.42	+1.3
2,750,203	+		IAI47_13000	0.42	+1.3
2,750,203	+		IAI47_13000	0.42	-0.3
2,750,203	+		IAI47_13000	0.42	+1.4
2,750,204	-		IAI47_13000	0.42	+0.5
2,750,204	-		IAI47_13000	0.42	+0.5
2,750,204	-		IAI47_13000	0.42	-0.4
2,750,206	+		IAI47_13000	0.43	+0.4
2,750,207	-		IAI47_13000	0.43	-0.4
2,750,241	+		IAI47_13000	0.47	+2.1
2,750,241	+		IAI47_13000	0.47	-0.4
2,750,242	-		IAI47_13000	0.48	+0.6
2,750,242	-		IAI47_13000	0.48	-1.1
2,750,311	+		IAI47_13000	0.57	-0.9
2,750,311	+		IAI47_13000	0.57	-0.6
2,750,311	+		IAI47_13000	0.57	+0.5
2,750,311	+		IAI47_13000	0.57	+0.3
2,750,312	-		IAI47_13000	0.57	-0.3
2,750,312	-		IAI47_13000	0.57	-0.8
2,750,359	+		IAI47_13000	0.64	-0.4
2,750,360	-		IAI47_13000	0.64	-0.6
2,750,360	-		IAI47_13000	0.64	-0.1
2,750,406	-		IAI47_13000	0.70	+0.1
2,750,473	-		IAI47_13000	0.79	+1.9
2,750,479	-		IAI47_13000	0.80	+3.6
2,750,484	+		IAI47_13000	0.81	-1.0
2,750,484	+		IAI47_13000	0.81	+0.2
2,750,484	+		IAI47_13000	0.81	-0.6
2,750,484	+		IAI47_13000	0.81	-2.3
2,750,484	+		IAI47_13000	0.81	+2.7
2,750,484	+		IAI47_13000	0.81	-1.5
2,750,485	-		IAI47_13000	0.81	-0.6
2,750,485	-		IAI47_13000	0.81	+0.4
2,750,485	-		IAI47_13000	0.81	-0.4
2,750,492	-		IAI47_13000	0.82	+0.4
2,750,492	-		IAI47_13000	0.82	-1.3
2,750,492	-		IAI47_13000	0.82	-1.2
2,750,499	+		IAI47_13000	0.83	-0.9
2,750,512	-		IAI47_13000	0.84	+0.8
2,750,530	-		IAI47_13000	0.87	+0.4
2,750,530	-		IAI47_13000	0.87	-0.3
2,750,569	-				-0.1
2,750,587	-				+0.9
2,750,590	+				+1.1
2,750,590	+				+1.4
2,750,590	+				+0.2
2,750,591	-				-1.8
2,750,591	-				-2.3
2,750,591	-				+0.6
2,750,591	-				+0.1
2,750,602	+				+0.4
2,750,602	+				+3.0
2,750,602	+				-0.3
2,750,603	-				-2.2
2,750,603	-				-0.3
2,750,623	+				-0.3
2,750,623	+				-1.0
2,750,623	+				-0.3
2,750,624	-				-1.1
2,750,826	+		IAI47_13005	0.27	-0.5
2,750,827	-		IAI47_13005	0.27	-1.5
2,750,827	-		IAI47_13005	0.27	-0.7
2,750,827	-		IAI47_13005	0.27	-0.9
2,750,827	-		IAI47_13005	0.27	+2.3
2,750,827	-		IAI47_13005	0.27	+0.5
2,750,830	+		IAI47_13005	0.28	-0.6
2,750,895	+		IAI47_13005	0.37	+1.2
2,750,895	+		IAI47_13005	0.37	-0.7
2,750,896	-		IAI47_13005	0.37	+0.2
2,750,896	-		IAI47_13005	0.37	+0.0
2,750,896	-		IAI47_13005	0.37	-0.6
2,750,896	-		IAI47_13005	0.37	+0.4
2,750,974	+		IAI47_13005	0.48	-0.7
2,750,974	+		IAI47_13005	0.48	+1.1
2,750,974	+		IAI47_13005	0.48	-1.5
2,751,012	+		IAI47_13005	0.53	+0.2
2,751,012	+		IAI47_13005	0.53	+0.1
2,751,013	-		IAI47_13005	0.53	+2.0
2,751,090	+		IAI47_13005	0.64	+0.9
2,751,091	-		IAI47_13005	0.64	+1.1
2,751,091	-		IAI47_13005	0.64	+1.6
2,751,149	+		IAI47_13005	0.72	-1.6
2,751,150	-		IAI47_13005	0.72	+1.5
2,751,156	+		IAI47_13005	0.73	+0.8
2,751,210	+		IAI47_13005	0.81	+0.1
2,751,210	+		IAI47_13005	0.81	-0.6
2,751,210	+		IAI47_13005	0.81	-0.1
2,751,210	+		IAI47_13005	0.81	-1.7
2,751,211	-		IAI47_13005	0.81	+2.7
2,751,211	-		IAI47_13005	0.81	-1.5
2,751,211	-		IAI47_13005	0.81	-0.6
2,751,211	-		IAI47_13005	0.81	+0.1
2,751,211	-		IAI47_13005	0.81	-0.5
2,751,217	-		IAI47_13005	0.82	-1.0
2,751,237	+		IAI47_13005	0.84	-1.4
2,751,238	-		IAI47_13005	0.85	+2.3
2,751,266	-		IAI47_13005	0.88	-1.7
2,751,276	+		IAI47_13005	0.90	+2.0
2,751,276	+		IAI47_13005	0.90	+0.6
2,751,276	+		IAI47_13005	0.90	+2.8
2,751,276	+		IAI47_13005	0.90	+0.4
2,751,277	-				-1.5
2,751,277	-				-0.3
2,751,277	-				+1.1
2,751,277	-				-0.1
2,751,277	-				+0.9
2,751,357	+				-2.0
2,751,357	+				+1.6
2,751,358	-				-1.8
2,751,358	-				+1.7
2,751,479	+		IAI47_13010	0.20	-1.4
2,751,480	-		IAI47_13010	0.20	-0.4
2,751,480	-		IAI47_13010	0.20	-1.1
2,751,500	+		IAI47_13010	0.23	+2.0
2,751,501	-		IAI47_13010	0.23	+0.1
2,751,501	-		IAI47_13010	0.23	+0.9
2,751,501	-		IAI47_13010	0.23	-1.4
2,751,549	+		IAI47_13010	0.30	+2.0
2,751,549	+		IAI47_13010	0.30	-0.1
2,751,549	+		IAI47_13010	0.30	+0.1
2,751,549	+		IAI47_13010	0.30	+0.1
2,751,549	+		IAI47_13010	0.30	-0.1
2,751,550	-		IAI47_13010	0.30	+1.0
2,751,550	-		IAI47_13010	0.30	+0.6
2,751,552	+		IAI47_13010	0.30	-0.6
2,751,553	-		IAI47_13010	0.31	+3.3