Strain Fitness in Pantoea sp. MT58 around IAI47_12600

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,649,653	+		IAI47_12595	0.23	-0.9
2,649,653	+		IAI47_12595	0.23	-1.3
2,649,653	+		IAI47_12595	0.23	+0.4
2,649,653	+		IAI47_12595	0.23	+0.7
2,649,654	-		IAI47_12595	0.23	-1.6
2,649,654	-		IAI47_12595	0.23	-0.0
2,649,654	-		IAI47_12595	0.23	+2.0
2,649,654	-		IAI47_12595	0.23	+0.5
2,649,687	+		IAI47_12595	0.25	+3.1
2,649,714	-		IAI47_12595	0.28	+1.7
2,649,731	+		IAI47_12595	0.29	-0.4
2,649,731	+		IAI47_12595	0.29	-1.2
2,649,731	+		IAI47_12595	0.29	+0.0
2,649,732	-		IAI47_12595	0.29	+0.0
2,649,732	-		IAI47_12595	0.29	+2.4
2,649,754	+		IAI47_12595	0.31	-0.9
2,649,757	+		IAI47_12595	0.31	-1.7
2,649,757	+		IAI47_12595	0.31	+0.1
2,649,757	+		IAI47_12595	0.31	-0.8
2,649,757	+		IAI47_12595	0.31	+1.0
2,649,758	-		IAI47_12595	0.31	+0.6
2,649,758	-		IAI47_12595	0.31	+0.7
2,649,804	-		IAI47_12595	0.35	-1.1
2,649,804	-		IAI47_12595	0.35	-0.1
2,649,843	+		IAI47_12595	0.39	-1.3
2,649,843	+		IAI47_12595	0.39	-0.9
2,649,843	+		IAI47_12595	0.39	+1.4
2,649,843	+		IAI47_12595	0.39	-0.7
2,649,843	+		IAI47_12595	0.39	-0.5
2,649,843	+		IAI47_12595	0.39	+0.9
2,649,843	+		IAI47_12595	0.39	-1.8
2,649,844	-		IAI47_12595	0.39	-1.6
2,649,844	-		IAI47_12595	0.39	+2.1
2,649,844	-		IAI47_12595	0.39	+0.7
2,649,983	+		IAI47_12595	0.50	+3.0
2,649,984	-		IAI47_12595	0.50	-2.2
2,649,993	+		IAI47_12595	0.51	+0.7
2,649,994	-		IAI47_12595	0.51	+3.0
2,649,996	+		IAI47_12595	0.51	+1.6
2,649,997	-		IAI47_12595	0.51	-0.1
2,649,997	-		IAI47_12595	0.51	-0.0
2,649,997	-		IAI47_12595	0.51	+2.0
2,649,997	-		IAI47_12595	0.51	+0.6
2,649,997	-		IAI47_12595	0.51	-1.0
2,649,997	-		IAI47_12595	0.51	+0.8
2,649,997	-		IAI47_12595	0.51	+1.2
2,650,025	+		IAI47_12595	0.54	-0.7
2,650,025	+		IAI47_12595	0.54	+0.6
2,650,035	+		IAI47_12595	0.55	+1.1
2,650,036	-		IAI47_12595	0.55	+1.9
2,650,055	-		IAI47_12595	0.56	+0.4
2,650,071	+		IAI47_12595	0.58	-0.4
2,650,072	-		IAI47_12595	0.58	+0.7
2,650,072	-		IAI47_12595	0.58	+0.2
2,650,072	-		IAI47_12595	0.58	-0.0
2,650,112	+		IAI47_12595	0.61	+0.1
2,650,112	+		IAI47_12595	0.61	+3.4
2,650,113	-		IAI47_12595	0.61	+1.1
2,650,113	-		IAI47_12595	0.61	+0.3
2,650,113	-		IAI47_12595	0.61	-0.6
2,650,118	-		IAI47_12595	0.62	+1.8
2,650,133	+		IAI47_12595	0.63	-1.2
2,650,133	+		IAI47_12595	0.63	+0.1
2,650,133	+		IAI47_12595	0.63	-0.7
2,650,156	+		IAI47_12595	0.65	+0.8
2,650,157	-		IAI47_12595	0.65	-0.6
2,650,277	+		IAI47_12595	0.75	+0.4
2,650,278	-		IAI47_12595	0.75	-0.6
2,650,315	+		IAI47_12595	0.78	-1.4
2,650,315	+		IAI47_12595	0.78	+0.3
2,650,315	+		IAI47_12595	0.78	+0.6
2,650,316	-		IAI47_12595	0.78	-0.6
2,650,337	+		IAI47_12595	0.80	-1.8
2,650,337	+		IAI47_12595	0.80	-0.4
2,650,337	+		IAI47_12595	0.80	-0.9
2,650,338	-		IAI47_12595	0.80	+2.3
2,650,338	-		IAI47_12595	0.80	+1.0
2,650,338	-		IAI47_12595	0.80	+1.0
2,650,338	-		IAI47_12595	0.80	+1.4
2,650,343	+		IAI47_12595	0.81	-0.4
2,650,343	+		IAI47_12595	0.81	+1.1
2,650,344	-		IAI47_12595	0.81	-2.8
2,650,344	-		IAI47_12595	0.81	-1.6
2,650,346	+		IAI47_12595	0.81	+0.8
2,650,346	+		IAI47_12595	0.81	-0.5
2,650,346	+		IAI47_12595	0.81	+0.9
2,650,346	+		IAI47_12595	0.81	+2.7
2,650,346	+		IAI47_12595	0.81	-1.1
2,650,346	+		IAI47_12595	0.81	-1.4
2,650,346	+		IAI47_12595	0.81	+0.7
2,650,346	+		IAI47_12595	0.81	+0.2
2,650,347	-		IAI47_12595	0.81	-0.6
2,650,347	-		IAI47_12595	0.81	-1.0
2,650,347	-		IAI47_12595	0.81	-1.5
2,650,347	-		IAI47_12595	0.81	-0.2
2,650,347	-		IAI47_12595	0.81	+1.7
2,650,347	-		IAI47_12595	0.81	-1.3
2,650,347	-		IAI47_12595	0.81	-0.3
2,650,349	+		IAI47_12595	0.81	-0.6
2,650,349	+		IAI47_12595	0.81	+1.1
2,650,349	+		IAI47_12595	0.81	+0.6
2,650,350	-		IAI47_12595	0.81	-1.8
2,650,350	-		IAI47_12595	0.81	-0.4
2,650,350	-		IAI47_12595	0.81	+0.5
2,650,350	-		IAI47_12595	0.81	-0.0
2,650,350	-		IAI47_12595	0.81	+1.1
2,650,350	-		IAI47_12595	0.81	+0.5
2,650,350	-		IAI47_12595	0.81	+0.2
2,650,350	-		IAI47_12595	0.81	+0.6
2,650,366	+		IAI47_12595	0.82	+0.4
2,650,439	+		IAI47_12595	0.89	+3.8
2,650,440	-		IAI47_12595	0.89	+0.4
2,650,481	+				+0.4
2,650,482	-				+1.3
2,650,527	+				+0.4
2,650,527	+				-0.5
2,650,542	+				+0.6
2,650,543	-				+0.4
2,650,633	-				+0.4
2,650,633	-				+1.1
2,650,633	-				+0.0
2,650,633	-				+0.5
2,650,645	-				-0.6
2,650,645	-				+1.7
2,650,659	+				+1.4
2,650,715	+		IAI47_12600	0.21	+2.3
2,650,735	+		IAI47_12600	0.27	+0.4
2,650,735	+		IAI47_12600	0.27	-0.6
2,650,736	-		IAI47_12600	0.28	-0.6
2,650,736	-		IAI47_12600	0.28	+0.2
2,650,736	-		IAI47_12600	0.28	-1.3
2,650,742	+		IAI47_12600	0.30	-0.1
2,650,752	+		IAI47_12600	0.33	-0.4
2,650,801	+		IAI47_12600	0.48	+0.2
2,650,802	-		IAI47_12600	0.48	+2.7
2,650,802	-		IAI47_12600	0.48	-0.4
2,650,842	+		IAI47_12600	0.61	-0.7
2,650,842	+		IAI47_12600	0.61	+0.9
2,650,842	+		IAI47_12600	0.61	-0.3
2,650,842	+		IAI47_12600	0.61	+0.2
2,650,842	+		IAI47_12600	0.61	+0.3
2,650,842	+		IAI47_12600	0.61	+1.1
2,650,842	+		IAI47_12600	0.61	+2.8
2,650,843	-		IAI47_12600	0.61	-1.3
2,650,843	-		IAI47_12600	0.61	+0.1
2,650,843	-		IAI47_12600	0.61	+0.9
2,650,843	-		IAI47_12600	0.61	+0.1
2,650,843	-		IAI47_12600	0.61	-1.3
2,650,843	-		IAI47_12600	0.61	-0.1
2,650,846	+		IAI47_12600	0.62	-1.1
2,650,846	+		IAI47_12600	0.62	-0.8
2,650,846	+		IAI47_12600	0.62	+2.6
2,650,846	+		IAI47_12600	0.62	-0.5
2,650,846	+		IAI47_12600	0.62	-2.5
2,650,846	+		IAI47_12600	0.62	+1.1
2,650,846	+		IAI47_12600	0.62	-1.0
2,650,846	+		IAI47_12600	0.62	+1.3
2,650,846	+		IAI47_12600	0.62	-0.6
2,650,846	+		IAI47_12600	0.62	+1.4
2,650,847	-		IAI47_12600	0.63	-0.4
2,650,847	-		IAI47_12600	0.63	+0.1
2,650,847	-		IAI47_12600	0.63	-0.0
2,650,847	-		IAI47_12600	0.63	-1.3
2,650,847	-		IAI47_12600	0.63	-0.6
2,650,847	-		IAI47_12600	0.63	-0.6
2,650,847	-		IAI47_12600	0.63	+0.1
2,650,847	-		IAI47_12600	0.63	+0.1
2,650,847	-		IAI47_12600	0.63	+0.4
2,650,928	+		IAI47_12600	0.88	+0.4
2,650,928	+		IAI47_12600	0.88	-0.9
2,650,929	-		IAI47_12600	0.88	+1.1
2,650,963	+				+0.9
2,650,963	+				-1.1
2,650,963	+				+0.6
2,650,963	+				+1.1
2,650,963	+				-0.5
2,650,963	+				-0.4
2,650,963	+				+1.1
2,650,963	+				+0.6
2,650,964	-				-0.1
2,650,964	-				+0.0
2,651,000	+				-0.1
2,651,049	+		IAI47_12605	0.12	-1.0
2,651,097	+		IAI47_12605	0.24	-0.4
2,651,098	-		IAI47_12605	0.24	+1.6
2,651,098	-		IAI47_12605	0.24	-1.4
2,651,119	+		IAI47_12605	0.29	-0.4
2,651,120	-		IAI47_12605	0.29	+2.8
2,651,120	-		IAI47_12605	0.29	+0.0
2,651,120	-		IAI47_12605	0.29	+0.2
2,651,140	+		IAI47_12605	0.34	+1.6
2,651,140	+		IAI47_12605	0.34	+0.5
2,651,140	+		IAI47_12605	0.34	+0.7
2,651,141	-		IAI47_12605	0.34	+1.2
2,651,142	+		IAI47_12605	0.35	+0.4
2,651,142	+		IAI47_12605	0.35	+0.2
2,651,142	+		IAI47_12605	0.35	+0.9
2,651,142	+		IAI47_12605	0.35	+0.6
2,651,142	+		IAI47_12605	0.35	+0.4
2,651,143	-		IAI47_12605	0.35	+0.2
2,651,143	-		IAI47_12605	0.35	+0.4
2,651,143	-		IAI47_12605	0.35	+1.4
2,651,196	+		IAI47_12605	0.48	+2.4
2,651,196	+		IAI47_12605	0.48	+0.6
2,651,196	+		IAI47_12605	0.48	-0.4
2,651,197	-		IAI47_12605	0.48	+0.2
2,651,197	-		IAI47_12605	0.48	+1.2
2,651,212	+		IAI47_12605	0.51	-0.9
2,651,213	-		IAI47_12605	0.52	-0.2
2,651,231	+		IAI47_12605	0.56	-1.1
2,651,231	+		IAI47_12605	0.56	-1.4
2,651,232	-		IAI47_12605	0.56	-0.4
2,651,291	+		IAI47_12605	0.71	+0.4
2,651,291	+		IAI47_12605	0.71	-0.3
2,651,291	+		IAI47_12605	0.71	-2.3
2,651,291	+		IAI47_12605	0.71	+0.0
2,651,291	+		IAI47_12605	0.71	+0.4
2,651,292	-		IAI47_12605	0.71	-0.7
2,651,292	-		IAI47_12605	0.71	-0.1
2,651,309	+		IAI47_12605	0.75	+0.9
2,651,309	+		IAI47_12605	0.75	+1.3
2,651,309	+		IAI47_12605	0.75	+0.2
2,651,309	+		IAI47_12605	0.75	+1.5
2,651,309	+		IAI47_12605	0.75	-1.7
2,651,310	-		IAI47_12605	0.75	+0.4
2,651,310	-		IAI47_12605	0.75	+1.4
2,651,310	-		IAI47_12605	0.75	-0.1
2,651,310	-		IAI47_12605	0.75	+0.4
2,651,310	-		IAI47_12605	0.75	+0.4
2,651,324	+		IAI47_12605	0.79	-0.1
2,651,325	-		IAI47_12605	0.79	+1.0
2,651,325	-		IAI47_12605	0.79	+0.7
2,651,325	-		IAI47_12605	0.79	-0.1
2,651,325	-		IAI47_12605	0.79	+0.6
2,651,325	-		IAI47_12605	0.79	+0.1
2,651,359	+		IAI47_12605	0.87	-2.0
2,651,359	+		IAI47_12605	0.87	+0.7
2,651,359	+		IAI47_12605	0.87	+0.1
2,651,360	-		IAI47_12605	0.87	+0.9
2,651,360	-		IAI47_12605	0.87	-0.7
2,651,367	+		IAI47_12605	0.89	-0.6
2,651,368	-		IAI47_12605	0.89	-0.8
2,651,368	-		IAI47_12605	0.89	+1.0
2,651,368	-		IAI47_12605	0.89	+0.3
2,651,443	+				+0.4
2,651,443	+				+0.1
2,651,443	+				-2.1
2,651,443	+				+1.6
2,651,443	+				-1.1
2,651,443	+				+0.9
2,651,444	-				-1.7
2,651,444	-				+0.6
2,651,444	-				+1.7
2,651,444	-				+1.4
2,651,444	-				+0.2
2,651,444	-				+0.0
2,651,444	-				-1.6
2,651,444	-				-1.8
2,651,484	+				+3.2
2,651,484	+				+0.9
2,651,484	+				+0.3
2,651,485	-				+1.8
2,651,485	-				-0.4
2,651,485	-				+1.2
2,651,485	-				-0.5
2,651,504	+				-0.3
2,651,504	+				-1.9
2,651,504	+				+0.1
2,651,509	-				+0.7
2,651,509	-				-1.3
2,651,525	+				-1.6
2,651,576	+				-0.3
2,651,618	-				-0.5
2,651,621	+				+0.8
2,651,621	+				+0.3
2,651,621	+				+1.4
2,651,621	+				-2.5
2,651,621	+				+1.3
2,651,621	+				-0.6
2,651,621	+				+1.7
2,651,622	-				-1.1
2,651,622	-				+2.6
2,651,622	-				+0.4
2,651,622	-				-0.0
2,651,622	-				+0.2
2,651,622	-				-0.6
2,651,622	-				+0.7
2,651,622	-				+1.3
2,651,622	-				+0.6
2,651,622	-				-0.1
2,651,622	-				+0.9
2,651,622	-				+0.2
2,651,622	-				-1.5
2,651,622	-				-1.0
2,651,622	-				-0.6
2,651,622	-				-2.2
2,651,659	+		IAI47_12610	0.11	+1.0
2,651,659	+		IAI47_12610	0.11	-1.7
2,651,660	-		IAI47_12610	0.11	-1.2
2,651,660	-		IAI47_12610	0.11	+0.3
2,651,683	+		IAI47_12610	0.15	+1.2
2,651,683	+		IAI47_12610	0.15	+0.6
2,651,683	+		IAI47_12610	0.15	+1.4
2,651,684	-		IAI47_12610	0.15	-0.1
2,651,684	-		IAI47_12610	0.15	+3.6
2,651,684	-		IAI47_12610	0.15	+0.7
2,651,684	-		IAI47_12610	0.15	+1.0
2,651,684	-		IAI47_12610	0.15	+0.6
2,651,684	-		IAI47_12610	0.15	-1.6
2,651,820	+		IAI47_12610	0.36	+0.4
2,651,821	-		IAI47_12610	0.36	-1.5
2,651,870	+		IAI47_12610	0.44	+0.5
2,651,870	+		IAI47_12610	0.44	-1.4
2,651,870	+		IAI47_12610	0.44	+0.3
2,651,871	-		IAI47_12610	0.44	+0.6
2,651,871	-		IAI47_12610	0.44	+0.9
2,651,873	+		IAI47_12610	0.44	-0.6
2,651,873	+		IAI47_12610	0.44	-0.9
2,651,873	+		IAI47_12610	0.44	-1.1
2,651,873	+		IAI47_12610	0.44	-0.4
2,651,874	-		IAI47_12610	0.44	+1.9
2,651,910	+		IAI47_12610	0.50	+2.4
2,651,911	-		IAI47_12610	0.50	-0.0
2,651,930	+		IAI47_12610	0.53	+1.6
2,651,930	+		IAI47_12610	0.53	+1.1
2,651,930	+		IAI47_12610	0.53	-1.0
2,651,931	-		IAI47_12610	0.53	-0.2
2,651,931	-		IAI47_12610	0.53	-1.6
2,651,931	-		IAI47_12610	0.53	+0.2