Strain Fitness in Pantoea sp. MT58 around IAI47_12110

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,561,387	+		IAI47_12105	0.60	+0.0
2,561,410	+		IAI47_12105	0.63	-1.0
2,561,411	-		IAI47_12105	0.63	-1.5
2,561,411	-		IAI47_12105	0.63	+0.1
2,561,411	-		IAI47_12105	0.63	-1.4
2,561,449	+		IAI47_12105	0.67	-0.2
2,561,449	+		IAI47_12105	0.67	-1.3
2,561,450	-		IAI47_12105	0.67	+1.4
2,561,450	-		IAI47_12105	0.67	-0.9
2,561,450	-		IAI47_12105	0.67	-0.7
2,561,450	-		IAI47_12105	0.67	+0.7
2,561,570	+		IAI47_12105	0.79	+1.2
2,561,571	-		IAI47_12105	0.79	-3.0
2,561,595	+		IAI47_12105	0.82	-0.6
2,561,595	+		IAI47_12105	0.82	-2.1
2,561,595	+		IAI47_12105	0.82	-1.6
2,561,596	-		IAI47_12105	0.82	-2.1
2,561,596	-		IAI47_12105	0.82	-1.0
2,561,642	+		IAI47_12105	0.87	-0.6
2,561,642	+		IAI47_12105	0.87	+0.6
2,561,643	-		IAI47_12105	0.87	-2.6
2,561,643	-		IAI47_12105	0.87	-0.6
2,561,643	-		IAI47_12105	0.87	-0.5
2,561,643	-		IAI47_12105	0.87	-0.8
2,561,652	+		IAI47_12105	0.88	-1.0
2,561,653	-		IAI47_12105	0.88	-0.8
2,561,677	+				-1.9
2,561,677	+				-1.0
2,561,677	+				-0.1
2,561,678	-				+0.2
2,561,678	-				+0.0
2,561,698	+				-2.0
2,561,698	+				+0.2
2,561,699	-				+0.1
2,561,745	-				-1.7
2,561,745	-				-0.1
2,561,779	+				-1.8
2,561,780	-				-0.0
2,561,780	-				+1.7
2,561,783	+				-0.9
2,561,783	+				+0.7
2,561,783	+				+0.3
2,561,784	-				-2.0
2,561,784	-				-0.5
2,561,784	-				+0.4
2,561,784	-				-1.5
2,561,821	-				-0.8
2,561,896	+				+1.1
2,561,896	+				-0.6
2,561,910	+				+1.5
2,561,946	+				+1.1
2,561,946	+				-1.7
2,561,946	+				-1.0
2,561,946	+				+1.9
2,561,946	+				-0.9
2,561,946	+				+1.9
2,561,946	+				-2.9
2,561,948	+				-0.9
2,561,957	+				-1.3
2,561,968	+				-0.3
2,562,059	+				+2.3
2,562,059	+				+1.6
2,562,253	+				-1.8
2,562,253	+				+0.3
2,562,289	+				-2.1
2,562,289	+				+0.5
2,562,289	+				-1.3
2,562,289	+				-0.3
2,562,293	+				-0.0
2,562,293	+				+0.8
2,562,293	+				-2.2
2,562,293	+				-1.2
2,562,307	+				-0.8
2,562,307	+				-0.5
2,562,307	+				-1.7
2,564,683	+		IAI47_12110	0.68	+1.4
2,564,695	+		IAI47_12110	0.68	+1.8
2,564,836	+		IAI47_12110	0.72	-0.7
2,564,836	+		IAI47_12110	0.72	-0.2
2,564,836	+		IAI47_12110	0.72	+3.9
2,564,977	+		IAI47_12110	0.76	-0.4
2,564,977	+		IAI47_12110	0.76	-0.3
2,565,054	-		IAI47_12110	0.79	+1.6
2,565,190	+		IAI47_12110	0.83	+0.8
2,565,199	+		IAI47_12110	0.83	-0.4
2,565,199	+		IAI47_12110	0.83	+1.5
2,565,200	-		IAI47_12110	0.83	-0.6
2,565,388	+		IAI47_12110	0.88	+1.6
2,565,388	+		IAI47_12110	0.88	+1.3
2,565,716	+				-1.2
2,565,717	-				-1.0
2,565,752	-				+0.1
2,565,798	+				-0.3
2,565,798	+				-1.3
2,565,798	+				+0.1
2,565,798	+				+0.2
2,565,798	+				-2.0
2,565,799	-				-0.4
2,565,799	-				-1.4
2,565,799	-				+0.3
2,565,799	-				+0.3
2,565,922	+				+0.6
2,565,943	-				+2.0
2,565,943	-				+0.9
2,565,943	-				+0.5
2,565,943	-				+1.2
2,565,943	-				-0.8
2,565,943	-				+0.4
2,566,028	+				+0.6
2,566,028	+				-0.0
2,566,028	+				-0.0
2,566,028	+				-0.9
2,566,029	-				+0.9
2,566,029	-				+2.0
2,566,029	-				-0.2
2,566,084	-				-0.9
2,566,090	+				-1.5
2,566,090	+				-1.5
2,566,091	-				+0.7
2,566,091	-				+2.1
2,566,091	-				-0.4
2,566,091	-				+0.9
2,566,167	+				-0.1
2,566,182	-				-0.6
2,566,186	+				+0.3
2,566,187	-				+1.7
2,566,244	+				+0.3
2,566,244	+				-1.7
2,566,244	+				+1.2
2,566,244	+				-1.6
2,566,245	-				-0.5
2,566,245	-				-1.5
2,566,245	-				+0.2
2,566,245	-				+0.4
2,566,250	+				+1.1
2,566,250	+				+1.2
2,566,250	+				-3.4
2,566,250	+				-0.9
2,566,251	-				-0.0
2,566,251	-				+0.3
2,566,262	-				-0.2
2,566,262	-				+0.3
2,566,262	-				+0.3
2,566,292	+				+1.6
2,566,292	+				-2.2
2,566,292	+				-0.2
2,566,292	+				-1.3
2,566,292	+				-0.8
2,566,292	+				-1.5
2,566,293	-				+1.1
2,566,293	-				-0.2
2,566,293	-				+1.0
2,566,293	-				+1.4
2,566,293	-				+0.7
2,566,293	-				+0.0
2,566,293	-				-0.9
2,566,294	+				-2.6
2,566,294	+				-0.2
2,566,294	+				+1.4
2,566,294	+				+0.1
2,566,294	+				+0.9
2,566,294	+				-1.3
2,566,294	+				-1.0
2,566,295	-				+2.0
2,566,295	-				-0.4
2,566,295	-				-1.3
2,566,295	-				+0.3
2,566,315	-		IAI47_12115	0.11	+0.8
2,566,321	-		IAI47_12115	0.12	+0.4
2,566,321	-		IAI47_12115	0.12	-0.5
2,566,321	-		IAI47_12115	0.12	+0.1
2,566,321	-		IAI47_12115	0.12	+0.5
2,566,321	-		IAI47_12115	0.12	+0.3
2,566,349	+		IAI47_12115	0.14	-0.9
2,566,350	-		IAI47_12115	0.15	-1.8
2,566,351	+		IAI47_12115	0.15	-0.2
2,566,351	+		IAI47_12115	0.15	+0.5
2,566,351	+		IAI47_12115	0.15	-1.2
2,566,351	+		IAI47_12115	0.15	-0.3
2,566,351	+		IAI47_12115	0.15	-1.7
2,566,351	+		IAI47_12115	0.15	+0.1
2,566,352	-		IAI47_12115	0.15	-1.6
2,566,352	-		IAI47_12115	0.15	+0.1
2,566,352	-		IAI47_12115	0.15	+1.1
2,566,388	+		IAI47_12115	0.19	-0.2
2,566,388	+		IAI47_12115	0.19	+1.4
2,566,389	-		IAI47_12115	0.19	+2.0
2,566,439	+		IAI47_12115	0.24	+2.9
2,566,439	+		IAI47_12115	0.24	-0.6
2,566,440	-		IAI47_12115	0.24	+1.5
2,566,467	-		IAI47_12115	0.27	-0.9
2,566,472	+		IAI47_12115	0.27	+1.7
2,566,472	+		IAI47_12115	0.27	-0.6
2,566,472	+		IAI47_12115	0.27	+0.2
2,566,473	-		IAI47_12115	0.27	-0.6
2,566,473	-		IAI47_12115	0.27	+0.8
2,566,562	+		IAI47_12115	0.37	+0.2
2,566,562	+		IAI47_12115	0.37	-0.4
2,566,563	-		IAI47_12115	0.37	-0.0
2,566,563	-		IAI47_12115	0.37	+0.1
2,566,563	-		IAI47_12115	0.37	+1.6
2,566,626	-		IAI47_12115	0.43	-1.0
2,566,626	-		IAI47_12115	0.43	-0.9
2,566,626	-		IAI47_12115	0.43	-0.1
2,566,626	-		IAI47_12115	0.43	-1.0
2,566,626	-		IAI47_12115	0.43	+0.5
2,566,661	+		IAI47_12115	0.47	+1.4
2,566,661	+		IAI47_12115	0.47	+1.0
2,566,661	+		IAI47_12115	0.47	-0.5
2,566,662	-		IAI47_12115	0.47	-0.3
2,566,708	+		IAI47_12115	0.52	-1.4
2,566,709	-		IAI47_12115	0.52	+1.4
2,566,757	+		IAI47_12115	0.57	-0.2
2,566,757	+		IAI47_12115	0.57	-0.0
2,566,773	-		IAI47_12115	0.58	+1.8
2,566,773	-		IAI47_12115	0.58	-1.4
2,566,773	-		IAI47_12115	0.58	+1.0
2,566,775	-		IAI47_12115	0.59	-1.2