Strain Fitness in Pantoea sp. MT58 around IAI47_09465

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,997,531	+		IAI47_09460	0.47	+2.7
1,997,558	+		IAI47_09460	0.49	+0.4
1,997,558	+		IAI47_09460	0.49	+1.3
1,997,586	+		IAI47_09460	0.51	-0.6
1,997,586	+		IAI47_09460	0.51	-0.3
1,997,586	+		IAI47_09460	0.51	-1.6
1,997,586	+		IAI47_09460	0.51	+1.7
1,997,586	+		IAI47_09460	0.51	-0.5
1,997,586	+		IAI47_09460	0.51	-0.3
1,997,586	+		IAI47_09460	0.51	+0.2
1,997,586	+		IAI47_09460	0.51	+1.0
1,997,586	+		IAI47_09460	0.51	+1.6
1,997,586	+		IAI47_09460	0.51	+0.2
1,997,586	+		IAI47_09460	0.51	+1.4
1,997,586	+		IAI47_09460	0.51	+2.0
1,997,586	+		IAI47_09460	0.51	+4.2
1,997,587	-		IAI47_09460	0.51	-0.1
1,997,587	-		IAI47_09460	0.51	+1.1
1,997,587	-		IAI47_09460	0.51	-0.1
1,997,587	-		IAI47_09460	0.51	-2.2
1,997,587	-		IAI47_09460	0.51	-2.6
1,997,587	-		IAI47_09460	0.51	-0.3
1,997,587	-		IAI47_09460	0.51	-1.8
1,997,587	-		IAI47_09460	0.51	+1.4
1,997,587	-		IAI47_09460	0.51	-0.7
1,997,587	-		IAI47_09460	0.51	-0.1
1,997,587	-		IAI47_09460	0.51	-0.0
1,997,587	-		IAI47_09460	0.51	-0.4
1,997,587	-		IAI47_09460	0.51	+0.7
1,997,587	-		IAI47_09460	0.51	-1.8
1,997,587	-		IAI47_09460	0.51	+1.0
1,997,587	-		IAI47_09460	0.51	-1.7
1,997,596	+		IAI47_09460	0.51	+0.1
1,997,622	+		IAI47_09460	0.53	+1.7
1,997,622	+		IAI47_09460	0.53	+1.2
1,997,623	-		IAI47_09460	0.53	+1.1
1,997,623	-		IAI47_09460	0.53	+0.4
1,997,623	-		IAI47_09460	0.53	+0.2
1,997,638	+		IAI47_09460	0.54	+0.2
1,997,639	-		IAI47_09460	0.54	+1.5
1,997,646	+		IAI47_09460	0.54	+0.7
1,997,646	+		IAI47_09460	0.54	-0.5
1,997,646	+		IAI47_09460	0.54	+0.1
1,997,646	+		IAI47_09460	0.54	-0.5
1,997,646	+		IAI47_09460	0.54	-0.4
1,997,646	+		IAI47_09460	0.54	+2.2
1,997,646	+		IAI47_09460	0.54	+1.8
1,997,646	+		IAI47_09460	0.54	+4.3
1,997,646	+		IAI47_09460	0.54	+2.6
1,997,646	+		IAI47_09460	0.54	-1.2
1,997,646	+		IAI47_09460	0.54	+1.7
1,997,646	+		IAI47_09460	0.54	-1.0
1,997,646	+		IAI47_09460	0.54	+0.8
1,997,646	+		IAI47_09460	0.54	+2.4
1,997,646	+		IAI47_09460	0.54	-1.8
1,997,646	+		IAI47_09460	0.54	-2.1
1,997,646	+		IAI47_09460	0.54	+0.9
1,997,646	+		IAI47_09460	0.54	+0.9
1,997,646	+		IAI47_09460	0.54	+1.7
1,997,646	+		IAI47_09460	0.54	+0.7
1,997,646	+		IAI47_09460	0.54	-0.5
1,997,646	+		IAI47_09460	0.54	-0.8
1,997,647	-		IAI47_09460	0.55	+2.2
1,997,647	-		IAI47_09460	0.55	+1.0
1,997,647	-		IAI47_09460	0.55	-2.1
1,997,647	-		IAI47_09460	0.55	-1.6
1,997,647	-		IAI47_09460	0.55	+2.7
1,997,647	-		IAI47_09460	0.55	+0.2
1,997,647	-		IAI47_09460	0.55	-0.3
1,997,647	-		IAI47_09460	0.55	+0.2
1,997,647	-		IAI47_09460	0.55	+0.4
1,997,647	-		IAI47_09460	0.55	+1.9
1,997,647	-		IAI47_09460	0.55	+1.4
1,997,647	-		IAI47_09460	0.55	-0.0
1,997,647	-		IAI47_09460	0.55	+4.8
1,997,647	-		IAI47_09460	0.55	+2.1
1,997,647	-		IAI47_09460	0.55	-2.2
1,997,649	+		IAI47_09460	0.55	+0.9
1,997,649	+		IAI47_09460	0.55	+1.1
1,997,649	+		IAI47_09460	0.55	-0.4
1,997,649	+		IAI47_09460	0.55	-0.6
1,997,649	+		IAI47_09460	0.55	+0.2
1,997,649	+		IAI47_09460	0.55	-2.4
1,997,649	+		IAI47_09460	0.55	-1.8
1,997,649	+		IAI47_09460	0.55	+0.2
1,997,650	-		IAI47_09460	0.55	-0.3
1,997,650	-		IAI47_09460	0.55	+1.1
1,997,650	-		IAI47_09460	0.55	+2.8
1,997,650	-		IAI47_09460	0.55	-1.1
1,997,650	-		IAI47_09460	0.55	-0.2
1,997,652	+		IAI47_09460	0.55	-0.3
1,997,652	+		IAI47_09460	0.55	+0.9
1,997,652	+		IAI47_09460	0.55	+1.3
1,997,653	-		IAI47_09460	0.55	+2.5
1,997,653	-		IAI47_09460	0.55	+1.9
1,997,660	+		IAI47_09460	0.55	+0.1
1,997,718	-		IAI47_09460	0.59	-1.1
1,997,781	-		IAI47_09460	0.63	+1.1
1,997,781	-		IAI47_09460	0.63	+1.1
1,997,804	+		IAI47_09460	0.64	+2.7
1,997,922	+		IAI47_09460	0.71	+0.2
1,997,922	+		IAI47_09460	0.71	+1.0
1,997,923	-		IAI47_09460	0.72	-0.2
1,997,923	-		IAI47_09460	0.72	+0.0
1,997,923	-		IAI47_09460	0.72	-1.2
1,997,923	-		IAI47_09460	0.72	+0.7
1,997,923	-		IAI47_09460	0.72	+3.8
1,997,923	-		IAI47_09460	0.72	-0.8
1,997,923	-		IAI47_09460	0.72	+2.0
1,997,969	+		IAI47_09460	0.74	+0.9
1,997,969	+		IAI47_09460	0.74	-2.6
1,997,969	+		IAI47_09460	0.74	-1.6
1,997,970	-		IAI47_09460	0.74	+2.4
1,998,027	+		IAI47_09460	0.78	-0.3
1,998,028	-		IAI47_09460	0.78	-1.0
1,998,041	+		IAI47_09460	0.79	-0.4
1,998,041	+		IAI47_09460	0.79	-1.8
1,998,087	+		IAI47_09460	0.82	-0.8
1,998,087	+		IAI47_09460	0.82	+2.5
1,998,087	+		IAI47_09460	0.82	-0.2
1,998,088	-		IAI47_09460	0.82	+0.4
1,998,088	-		IAI47_09460	0.82	+1.5
1,998,140	+		IAI47_09460	0.85	-0.3
1,998,141	-		IAI47_09460	0.85	+0.1
1,998,153	-		IAI47_09460	0.86	-1.6
1,998,165	+		IAI47_09460	0.86	-0.1
1,998,165	+		IAI47_09460	0.86	-1.3
1,998,165	+		IAI47_09460	0.86	+0.9
1,998,165	+		IAI47_09460	0.86	+1.2
1,998,182	+		IAI47_09460	0.88	-0.1
1,998,215	+		IAI47_09460	0.90	-1.7
1,998,216	-		IAI47_09460	0.90	+1.2
1,998,216	-		IAI47_09460	0.90	+0.8
1,998,216	-		IAI47_09460	0.90	+1.2
1,998,225	+				-0.8
1,998,225	+				+0.0
1,998,225	+				-0.5
1,998,226	-				-0.3
1,998,276	+				+0.1
1,998,276	+				-0.1
1,998,276	+				-0.9
1,998,276	+				-0.1
1,998,276	+				-0.2
1,998,276	+				+0.2
1,998,277	-				+1.6
1,998,277	-				+0.5
1,998,277	-				-0.9
1,998,277	-				-0.3
1,998,282	+				-0.3
1,998,282	+				-0.3
1,998,283	-				+0.5
1,998,321	+				-2.0
1,998,322	-				+1.1
1,998,351	+				+0.2
1,998,351	+				+0.1
1,998,351	+				+1.1
1,998,381	+				-1.5
1,998,381	+				+1.1
1,998,381	+				+1.7
1,998,463	+				-0.5
1,998,464	-				+5.2
1,998,470	+				-0.2
1,998,475	+				+1.1
1,998,476	-				+0.1
1,998,481	+				-0.2
1,998,482	-				-2.8
1,998,484	+				+0.9
1,998,485	-				+0.9
1,998,485	-				-0.7
1,998,485	-				+1.1
1,998,485	-				+0.2
1,998,527	+				-1.7
1,998,527	+				-0.1
1,998,528	-				+0.8
1,998,528	-				-0.8
1,998,640	+		IAI47_09465	0.14	+0.2
1,998,640	+		IAI47_09465	0.14	-0.0
1,998,640	+		IAI47_09465	0.14	-2.4
1,998,640	+		IAI47_09465	0.14	+1.1
1,998,640	+		IAI47_09465	0.14	-0.7
1,998,641	-		IAI47_09465	0.14	+1.1
1,998,641	-		IAI47_09465	0.14	+1.9
1,998,641	-		IAI47_09465	0.14	+1.4
1,998,641	-		IAI47_09465	0.14	+1.0
1,998,641	-		IAI47_09465	0.14	+1.8
1,998,641	-		IAI47_09465	0.14	+1.3
1,998,642	+		IAI47_09465	0.14	+1.4
1,998,642	+		IAI47_09465	0.14	+0.2
1,998,710	+		IAI47_09465	0.21	-1.4
1,998,760	-		IAI47_09465	0.26	+0.1
1,998,840	+		IAI47_09465	0.34	-0.9
1,998,841	-		IAI47_09465	0.34	+1.8
1,998,841	-		IAI47_09465	0.34	-1.8
1,998,841	-		IAI47_09465	0.34	+0.4
1,998,867	+		IAI47_09465	0.37	+0.2
1,998,867	+		IAI47_09465	0.37	-0.1
1,998,995	+		IAI47_09465	0.50	+0.5
1,998,995	+		IAI47_09465	0.50	+0.5
1,998,995	+		IAI47_09465	0.50	-0.0
1,998,995	+		IAI47_09465	0.50	-0.1
1,998,995	+		IAI47_09465	0.50	+1.0
1,998,996	-		IAI47_09465	0.50	+1.4
1,998,996	-		IAI47_09465	0.50	-0.6
1,998,996	-		IAI47_09465	0.50	-0.1
1,999,099	+		IAI47_09465	0.61	+0.4
1,999,099	+		IAI47_09465	0.61	-0.1
1,999,100	-		IAI47_09465	0.61	-0.8
1,999,100	-		IAI47_09465	0.61	+0.6
1,999,100	-		IAI47_09465	0.61	-0.2
1,999,100	-		IAI47_09465	0.61	+0.4
1,999,123	+		IAI47_09465	0.63	+0.7
1,999,123	+		IAI47_09465	0.63	+0.1
1,999,123	+		IAI47_09465	0.63	+2.0
1,999,124	-		IAI47_09465	0.63	+1.5
1,999,124	-		IAI47_09465	0.63	+0.4
1,999,124	-		IAI47_09465	0.63	+0.6
1,999,124	-		IAI47_09465	0.63	+0.4
1,999,303	+		IAI47_09465	0.81	+0.4
1,999,303	+		IAI47_09465	0.81	+0.1
1,999,303	+		IAI47_09465	0.81	-0.6
1,999,303	+		IAI47_09465	0.81	+0.1
1,999,303	+		IAI47_09465	0.81	-0.0
1,999,303	+		IAI47_09465	0.81	-0.8
1,999,303	+		IAI47_09465	0.81	+2.2
1,999,303	+		IAI47_09465	0.81	+1.0
1,999,303	+		IAI47_09465	0.81	+1.2
1,999,303	+		IAI47_09465	0.81	+0.1
1,999,303	+		IAI47_09465	0.81	-0.0
1,999,303	+		IAI47_09465	0.81	+0.4
1,999,303	+		IAI47_09465	0.81	+2.8
1,999,303	+		IAI47_09465	0.81	+1.5
1,999,304	-		IAI47_09465	0.82	+0.3
1,999,304	-		IAI47_09465	0.82	+1.5
1,999,304	-		IAI47_09465	0.82	+0.1
1,999,304	-		IAI47_09465	0.82	-0.4
1,999,304	-		IAI47_09465	0.82	+0.4
1,999,304	-		IAI47_09465	0.82	-0.9
1,999,304	-		IAI47_09465	0.82	-0.8
1,999,304	-		IAI47_09465	0.82	-2.2
1,999,304	-		IAI47_09465	0.82	+0.2
1,999,304	-		IAI47_09465	0.82	-0.4
1,999,304	-		IAI47_09465	0.82	+0.1
1,999,305	+		IAI47_09465	0.82	+1.3
1,999,305	+		IAI47_09465	0.82	+0.9
1,999,305	+		IAI47_09465	0.82	+0.7
1,999,305	+		IAI47_09465	0.82	-1.2
1,999,305	+		IAI47_09465	0.82	-1.4
1,999,305	+		IAI47_09465	0.82	+1.4
1,999,305	+		IAI47_09465	0.82	-2.1
1,999,306	-		IAI47_09465	0.82	-2.5
1,999,306	-		IAI47_09465	0.82	-1.8
1,999,306	-		IAI47_09465	0.82	-1.5
1,999,306	-		IAI47_09465	0.82	-0.7
1,999,306	-		IAI47_09465	0.82	-1.1
1,999,306	-		IAI47_09465	0.82	-0.4
1,999,308	+		IAI47_09465	0.82	+1.2
1,999,308	+		IAI47_09465	0.82	-0.0
1,999,308	+		IAI47_09465	0.82	+1.8
1,999,308	+		IAI47_09465	0.82	-0.6
1,999,308	+		IAI47_09465	0.82	-0.0
1,999,308	+		IAI47_09465	0.82	-0.1
1,999,308	+		IAI47_09465	0.82	+0.0
1,999,308	+		IAI47_09465	0.82	+0.6
1,999,308	+		IAI47_09465	0.82	+1.6
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.1
1,999,308	+		IAI47_09465	0.82	+0.1
1,999,308	+		IAI47_09465	0.82	-0.1
1,999,308	+		IAI47_09465	0.82	+2.0
1,999,308	+		IAI47_09465	0.82	-1.4
1,999,309	-		IAI47_09465	0.82	-0.4
1,999,309	-		IAI47_09465	0.82	-0.9
1,999,309	-		IAI47_09465	0.82	+0.5
1,999,309	-		IAI47_09465	0.82	+1.0
1,999,309	-		IAI47_09465	0.82	+0.6
1,999,309	-		IAI47_09465	0.82	+2.7
1,999,309	-		IAI47_09465	0.82	-0.4
1,999,309	-		IAI47_09465	0.82	-1.2
1,999,309	-		IAI47_09465	0.82	-0.1
1,999,309	-		IAI47_09465	0.82	+2.8
1,999,309	-		IAI47_09465	0.82	-0.8
1,999,368	+		IAI47_09465	0.88	+1.0
1,999,369	-		IAI47_09465	0.88	+0.2
1,999,403	-				+0.5
1,999,403	-				+1.5
1,999,413	+				+1.8
1,999,414	-				+1.5
1,999,414	-				-1.1
1,999,459	+				-1.2
1,999,460	-				+0.1
1,999,559	+				-0.5
1,999,559	+				+1.6
1,999,560	-				-0.8
1,999,560	-				+0.7
1,999,560	-				+1.5
1,999,662	+				+0.5
1,999,662	+				+1.1
1,999,663	-		IAI47_09470	0.10	+0.9
1,999,670	+		IAI47_09470	0.12	+0.4
1,999,671	-		IAI47_09470	0.13	+0.2
1,999,678	+		IAI47_09470	0.15	-0.2
1,999,678	+		IAI47_09470	0.15	+0.7
1,999,678	+		IAI47_09470	0.15	+0.9
1,999,678	+		IAI47_09470	0.15	+2.0
1,999,678	+		IAI47_09470	0.15	+0.5
1,999,679	-		IAI47_09470	0.15	+0.2
1,999,683	-		IAI47_09470	0.16	+0.0
1,999,683	-		IAI47_09470	0.16	-0.2
1,999,688	+		IAI47_09470	0.18	-0.6
1,999,695	+		IAI47_09470	0.20	+0.6
1,999,695	+		IAI47_09470	0.20	-0.1
1,999,695	+		IAI47_09470	0.20	+0.6
1,999,695	+		IAI47_09470	0.20	+0.6
1,999,704	+		IAI47_09470	0.23	-0.9
1,999,705	-		IAI47_09470	0.23	+0.1
1,999,773	+		IAI47_09470	0.44	+0.4
1,999,773	+		IAI47_09470	0.44	+0.6
1,999,779	+		IAI47_09470	0.46	+1.5
1,999,780	-		IAI47_09470	0.46	+1.2
1,999,823	-		IAI47_09470	0.59	+0.6
1,999,823	-		IAI47_09470	0.59	+2.2
1,999,953	-				-0.4
1,999,954	+				+0.6
1,999,955	-				-0.9
1,999,955	-				-0.0
1,999,987	+				+0.2
1,999,988	-				-0.1
1,999,992	+				-1.5
1,999,992	+				+1.0
1,999,993	-				+0.4
2,000,003	+				-1.4
2,000,004	-				+0.5
2,000,004	-				-0.5
2,000,004	-				+0.1
2,000,004	-				-1.5
2,000,004	-				-0.6
2,000,004	-				+1.3
2,000,004	-				+1.4
2,000,004	-				-0.7
2,000,008	-				+0.6
2,000,142	+		IAI47_09475	0.15	-0.1
2,000,143	-		IAI47_09475	0.15	+0.7
2,000,143	-		IAI47_09475	0.15	-0.8
2,000,143	-		IAI47_09475	0.15	+0.1
2,000,169	+		IAI47_09475	0.18	+0.0
2,000,170	-		IAI47_09475	0.18	+3.6
2,000,170	-		IAI47_09475	0.18	-0.2
2,000,170	-		IAI47_09475	0.18	+0.6
2,000,214	+		IAI47_09475	0.23	+2.9
2,000,214	+		IAI47_09475	0.23	+0.5
2,000,215	-		IAI47_09475	0.23	+0.0
2,000,215	-		IAI47_09475	0.23	-2.2
2,000,215	-		IAI47_09475	0.23	-0.1
2,000,215	-		IAI47_09475	0.23	-0.3
2,000,215	-		IAI47_09475	0.23	-1.6
2,000,215	-		IAI47_09475	0.23	+0.1
2,000,235	-		IAI47_09475	0.25	+0.5
2,000,242	-		IAI47_09475	0.26	+0.5
2,000,316	+		IAI47_09475	0.34	-0.0
2,000,351	+		IAI47_09475	0.37	-0.8
2,000,352	+		IAI47_09475	0.37	+0.6
2,000,352	+		IAI47_09475	0.37	+0.6
2,000,353	-		IAI47_09475	0.38	-0.0
2,000,353	-		IAI47_09475	0.38	-0.1
2,000,353	-		IAI47_09475	0.38	-0.3
2,000,353	-		IAI47_09475	0.38	+2.5
2,000,353	-		IAI47_09475	0.38	-1.6
2,000,353	-		IAI47_09475	0.38	+0.2
2,000,369	+		IAI47_09475	0.39	+1.0
2,000,370	-		IAI47_09475	0.39	+0.2
2,000,370	-		IAI47_09475	0.39	-1.2
2,000,427	+		IAI47_09475	0.45	+0.3
2,000,427	+		IAI47_09475	0.45	+0.3
2,000,427	+		IAI47_09475	0.45	-1.4
2,000,427	+		IAI47_09475	0.45	+1.7
2,000,427	+		IAI47_09475	0.45	+0.4
2,000,428	-		IAI47_09475	0.46	+0.1