Strain Fitness in Pantoea sp. MT58 around IAI47_09450

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,993,973	+		IAI47_09440	0.83	+1.2
1,993,973	+		IAI47_09440	0.83	-0.9
1,993,974	-		IAI47_09440	0.83	-0.9
1,994,000	+		IAI47_09440	0.84	+0.3
1,994,001	-		IAI47_09440	0.84	-0.6
1,994,020	+		IAI47_09440	0.86	-0.2
1,994,021	-		IAI47_09440	0.86	-0.6
1,994,049	+		IAI47_09440	0.87	+0.1
1,994,049	+		IAI47_09440	0.87	-0.1
1,994,049	+		IAI47_09440	0.87	-0.6
1,994,050	-		IAI47_09440	0.87	+1.2
1,994,092	+				-0.8
1,994,093	-				-0.1
1,994,093	-				-1.8
1,994,115	+				-0.6
1,994,115	+				-0.9
1,994,115	+				-1.1
1,994,129	+				-1.6
1,994,129	+				-2.1
1,994,129	+				-0.3
1,994,129	+				-2.2
1,994,130	-				-0.1
1,994,211	-				-0.8
1,994,250	+				+1.0
1,994,251	-				-2.8
1,994,295	-				-2.6
1,994,297	+				+1.7
1,994,297	+				-1.8
1,994,297	+				-0.1
1,994,325	-				-0.8
1,994,363	+		IAI47_09445	0.13	+2.3
1,994,363	+		IAI47_09445	0.13	+0.1
1,994,364	-		IAI47_09445	0.13	+0.6
1,994,364	-		IAI47_09445	0.13	-1.0
1,994,373	+		IAI47_09445	0.15	-0.2
1,994,373	+		IAI47_09445	0.15	-0.5
1,994,374	-		IAI47_09445	0.15	-0.1
1,994,374	-		IAI47_09445	0.15	+1.2
1,994,374	-		IAI47_09445	0.15	-1.1
1,994,440	+		IAI47_09445	0.29	+1.1
1,994,441	-		IAI47_09445	0.29	-1.9
1,994,441	-		IAI47_09445	0.29	-0.5
1,994,441	-		IAI47_09445	0.29	+1.5
1,994,447	+		IAI47_09445	0.30	-1.8
1,994,447	+		IAI47_09445	0.30	+0.7
1,994,447	+		IAI47_09445	0.30	+1.2
1,994,447	+		IAI47_09445	0.30	+2.1
1,994,447	+		IAI47_09445	0.30	+1.2
1,994,447	+		IAI47_09445	0.30	-1.3
1,994,447	+		IAI47_09445	0.30	+2.2
1,994,448	-		IAI47_09445	0.30	+0.9
1,994,448	-		IAI47_09445	0.30	-0.6
1,994,448	-		IAI47_09445	0.30	-0.3
1,994,453	+		IAI47_09445	0.31	-0.5
1,994,453	+		IAI47_09445	0.31	+0.2
1,994,453	+		IAI47_09445	0.31	+0.5
1,994,453	+		IAI47_09445	0.31	+0.1
1,994,453	+		IAI47_09445	0.31	-0.5
1,994,454	-		IAI47_09445	0.31	+1.4
1,994,454	-		IAI47_09445	0.31	-1.8
1,994,454	-		IAI47_09445	0.31	+2.1
1,994,454	-		IAI47_09445	0.31	-0.9
1,994,557	+		IAI47_09445	0.52	-1.9
1,994,557	+		IAI47_09445	0.52	+2.2
1,994,558	-		IAI47_09445	0.52	-1.5
1,994,672	+		IAI47_09445	0.75	-1.2
1,994,672	+		IAI47_09445	0.75	+2.2
1,994,672	+		IAI47_09445	0.75	+0.1
1,994,673	-		IAI47_09445	0.75	+0.1
1,994,673	-		IAI47_09445	0.75	-1.7
1,994,673	-		IAI47_09445	0.75	+3.1
1,994,708	-		IAI47_09445	0.82	+0.5
1,994,724	+		IAI47_09445	0.85	+0.5
1,994,724	+		IAI47_09445	0.85	+0.4
1,994,730	+		IAI47_09445	0.86	-0.9
1,994,773	-				-0.1
1,994,799	+				+0.6
1,994,799	+				-1.2
1,994,799	+				+2.9
1,994,799	+				+1.2
1,994,799	+				-1.0
1,994,799	+				-0.8
1,994,799	+				-0.6
1,994,800	-				+0.1
1,994,800	-				-0.8
1,994,800	-				+0.7
1,994,800	-				+0.0
1,994,800	-				+1.6
1,994,800	-				-0.8
1,994,800	-				+0.6
1,994,818	+				-1.2
1,994,818	+				+1.4
1,994,819	-				+1.0
1,994,843	+				+0.9
1,994,861	-				-0.5
1,994,861	-				-0.9
1,994,861	-				-0.4
1,994,867	+				-0.0
1,994,867	+				-1.3
1,994,868	-				+1.2
1,994,868	-				-0.2
1,994,868	-				-0.8
1,994,903	+				-0.8
1,994,903	+				+0.3
1,994,943	+				-1.1
1,994,943	+				+2.6
1,994,944	-				+0.6
1,994,944	-				+1.2
1,994,944	-				+0.0
1,994,956	+				+2.5
1,994,987	+				-0.1
1,995,061	+		IAI47_09450	0.12	-2.4
1,995,061	+		IAI47_09450	0.12	+0.3
1,995,062	-		IAI47_09450	0.12	+1.2
1,995,062	-		IAI47_09450	0.12	+0.5
1,995,088	-		IAI47_09450	0.14	+0.9
1,995,096	+		IAI47_09450	0.15	-1.1
1,995,096	+		IAI47_09450	0.15	+1.5
1,995,096	+		IAI47_09450	0.15	-1.8
1,995,096	+		IAI47_09450	0.15	-0.8
1,995,096	+		IAI47_09450	0.15	+0.6
1,995,097	-		IAI47_09450	0.15	+1.4
1,995,178	+		IAI47_09450	0.24	-0.4
1,995,178	+		IAI47_09450	0.24	+0.2
1,995,178	+		IAI47_09450	0.24	+0.2
1,995,178	+		IAI47_09450	0.24	-1.7
1,995,179	-		IAI47_09450	0.24	+0.8
1,995,179	-		IAI47_09450	0.24	-0.6
1,995,179	-		IAI47_09450	0.24	-1.9
1,995,329	+		IAI47_09450	0.39	+2.2
1,995,330	-		IAI47_09450	0.39	+1.1
1,995,395	+		IAI47_09450	0.46	+0.8
1,995,395	+		IAI47_09450	0.46	+0.9
1,995,417	-		IAI47_09450	0.48	+1.7
1,995,417	-		IAI47_09450	0.48	-0.6
1,995,559	+		IAI47_09450	0.62	+0.7
1,995,559	+		IAI47_09450	0.62	+1.7
1,995,559	+		IAI47_09450	0.62	-1.1
1,995,560	-		IAI47_09450	0.62	-1.6
1,995,560	-		IAI47_09450	0.62	-0.8
1,995,594	-		IAI47_09450	0.66	+0.3
1,995,632	+		IAI47_09450	0.70	+0.2
1,995,632	+		IAI47_09450	0.70	+0.5
1,995,632	+		IAI47_09450	0.70	+1.2
1,995,633	-		IAI47_09450	0.70	+0.0
1,995,633	-		IAI47_09450	0.70	-0.1
1,995,667	-		IAI47_09450	0.73	-0.6
1,995,667	-		IAI47_09450	0.73	+0.7
1,995,692	+		IAI47_09450	0.76	+1.8
1,995,793	+		IAI47_09450	0.86	-2.0
1,995,793	+		IAI47_09450	0.86	-0.1
1,995,794	-		IAI47_09450	0.86	-0.6
1,995,905	+				+1.8
1,995,905	+				-0.3
1,995,927	+				+1.0
1,995,927	+				+1.0
1,995,927	+				+2.8
1,995,927	+				-0.1
1,995,927	+				-2.2
1,995,927	+				+0.4
1,995,928	-				-0.7
1,995,928	-				+0.2
1,995,928	-				+0.1
1,995,928	-				-1.2
1,995,944	+				-1.3
1,995,945	-				+0.7
1,996,013	+		IAI47_09455	0.15	+0.8
1,996,013	+		IAI47_09455	0.15	+1.6
1,996,013	+		IAI47_09455	0.15	+0.2
1,996,013	+		IAI47_09455	0.15	-1.1
1,996,125	+		IAI47_09455	0.31	+1.2
1,996,125	+		IAI47_09455	0.31	+2.1
1,996,126	-		IAI47_09455	0.31	+0.3
1,996,126	-		IAI47_09455	0.31	+0.3
1,996,168	-		IAI47_09455	0.37	+0.7
1,996,177	+		IAI47_09455	0.39	+0.1
1,996,177	+		IAI47_09455	0.39	+0.9
1,996,178	-		IAI47_09455	0.39	-0.7
1,996,178	-		IAI47_09455	0.39	+0.1
1,996,178	-		IAI47_09455	0.39	-0.1
1,996,178	-		IAI47_09455	0.39	+1.4
1,996,178	-		IAI47_09455	0.39	+0.2
1,996,553	+				-0.2
1,996,554	-				-0.8
1,996,612	-				+1.1
1,996,612	-				+0.6
1,996,612	-				-0.9
1,996,612	-				-0.2
1,996,634	-				+0.4
1,996,634	-				+2.7
1,996,668	-				-1.7
1,996,668	-				-0.7
1,996,671	+				-0.3
1,996,671	+				+0.7
1,996,671	+				+0.2
1,996,671	+				+1.6
1,996,672	-				+2.0
1,996,672	-				-0.8
1,996,672	-				+0.5
1,996,672	-				+0.7
1,996,672	-				-0.5
1,996,672	-				-1.1
1,996,672	-				-2.2
1,996,672	-				-0.2
1,996,675	+				+1.0
1,996,675	+				-1.8
1,996,675	+				+2.0
1,996,675	+				-2.2
1,996,675	+				+2.8
1,996,676	-				+0.5
1,996,696	-				-0.8
1,996,714	+				+0.5
1,996,714	+				-0.3
1,996,726	-				+0.4
1,996,752	-				+0.7
1,996,763	-				-0.6
1,996,770	-				+0.5
1,996,781	+				-1.9
1,996,840	+				-0.3
1,996,886	+				-0.7
1,996,887	-				+2.2
1,996,887	-				-0.8
1,996,889	+				-1.0
1,996,889	+				-0.5
1,996,889	+				+1.4
1,996,889	+				+0.2
1,996,890	-				-0.6
1,996,928	-		IAI47_09460	0.10	+0.5