Strain Fitness in Pantoea sp. MT58 around IAI47_05540

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,164,963	+		IAI47_05535	0.25	+0.0
1,164,994	-		IAI47_05535	0.27	+1.3
1,165,079	+		IAI47_05535	0.34	-0.8
1,165,079	+		IAI47_05535	0.34	-1.2
1,165,079	+		IAI47_05535	0.34	+1.3
1,165,080	-		IAI47_05535	0.34	-0.4
1,165,080	-		IAI47_05535	0.34	-0.7
1,165,088	+		IAI47_05535	0.35	+1.0
1,165,088	+		IAI47_05535	0.35	+0.9
1,165,156	+		IAI47_05535	0.40	-1.1
1,165,156	+		IAI47_05535	0.40	+2.4
1,165,156	+		IAI47_05535	0.40	-1.9
1,165,156	+		IAI47_05535	0.40	+1.1
1,165,156	+		IAI47_05535	0.40	+0.1
1,165,156	+		IAI47_05535	0.40	-0.2
1,165,157	-		IAI47_05535	0.40	+0.7
1,165,157	-		IAI47_05535	0.40	+1.6
1,165,157	-		IAI47_05535	0.40	-1.3
1,165,157	-		IAI47_05535	0.40	-0.1
1,165,158	+		IAI47_05535	0.40	-0.3
1,165,158	+		IAI47_05535	0.40	+0.6
1,165,158	+		IAI47_05535	0.40	-1.4
1,165,158	+		IAI47_05535	0.40	+2.2
1,165,158	+		IAI47_05535	0.40	+0.8
1,165,159	-		IAI47_05535	0.41	-2.0
1,165,159	-		IAI47_05535	0.41	-2.1
1,165,159	-		IAI47_05535	0.41	+0.4
1,165,159	-		IAI47_05535	0.41	+0.6
1,165,159	-		IAI47_05535	0.41	+1.1
1,165,189	-		IAI47_05535	0.43	+1.3
1,165,189	-		IAI47_05535	0.43	-0.4
1,165,191	+		IAI47_05535	0.43	-1.9
1,165,192	-		IAI47_05535	0.43	+0.5
1,165,289	+		IAI47_05535	0.51	+2.5
1,165,290	-		IAI47_05535	0.51	+0.2
1,165,335	+		IAI47_05535	0.55	+0.4
1,165,335	+		IAI47_05535	0.55	+0.6
1,165,335	+		IAI47_05535	0.55	-0.3
1,165,335	+		IAI47_05535	0.55	+0.3
1,165,335	+		IAI47_05535	0.55	+0.4
1,165,335	+		IAI47_05535	0.55	+0.7
1,165,335	+		IAI47_05535	0.55	-0.0
1,165,336	-		IAI47_05535	0.55	+0.7
1,165,336	-		IAI47_05535	0.55	+0.5
1,165,348	+		IAI47_05535	0.56	-0.2
1,165,348	+		IAI47_05535	0.56	+1.0
1,165,348	+		IAI47_05535	0.56	-1.0
1,165,349	-		IAI47_05535	0.56	+2.4
1,165,359	+		IAI47_05535	0.57	-1.2
1,165,360	-		IAI47_05535	0.57	+0.7
1,165,400	+		IAI47_05535	0.60	-1.3
1,165,456	-		IAI47_05535	0.64	+0.5
1,165,480	+		IAI47_05535	0.66	-1.9
1,165,480	+		IAI47_05535	0.66	+3.4
1,165,480	+		IAI47_05535	0.66	+0.2
1,165,480	+		IAI47_05535	0.66	+0.2
1,165,481	-		IAI47_05535	0.67	+1.7
1,165,481	-		IAI47_05535	0.67	+0.8
1,165,481	-		IAI47_05535	0.67	-1.3
1,165,481	-		IAI47_05535	0.67	+1.7
1,165,502	+		IAI47_05535	0.68	+0.1
1,165,502	+		IAI47_05535	0.68	+0.7
1,165,502	+		IAI47_05535	0.68	+1.4
1,165,502	+		IAI47_05535	0.68	+0.9
1,165,503	-		IAI47_05535	0.68	-1.5
1,165,523	+		IAI47_05535	0.70	-1.5
1,165,523	+		IAI47_05535	0.70	-1.9
1,165,524	-		IAI47_05535	0.70	+0.7
1,165,524	-		IAI47_05535	0.70	+0.5
1,165,524	-		IAI47_05535	0.70	-2.2
1,165,592	+		IAI47_05535	0.75	-0.4
1,165,592	+		IAI47_05535	0.75	-1.2
1,165,592	+		IAI47_05535	0.75	-2.0
1,165,592	+		IAI47_05535	0.75	-0.8
1,165,592	+		IAI47_05535	0.75	-1.3
1,165,662	+		IAI47_05535	0.81	+0.8
1,165,662	+		IAI47_05535	0.81	+0.6
1,165,663	-		IAI47_05535	0.81	+0.1
1,165,794	+				+1.1
1,165,794	+				+0.3
1,165,794	+				-0.0
1,165,794	+				+0.6
1,165,794	+				-2.1
1,165,795	-				-0.5
1,165,795	-				-0.5
1,165,795	-				+1.4
1,165,864	+				+0.7
1,165,894	+				-0.0
1,165,895	-				+2.4
1,165,927	-				-1.1
1,165,944	+				-0.3
1,166,166	+		IAI47_05540	0.53	-1.7
1,166,166	+		IAI47_05540	0.53	+0.5
1,166,166	+		IAI47_05540	0.53	-0.1
1,166,166	+		IAI47_05540	0.53	+0.6
1,166,166	+		IAI47_05540	0.53	+2.6
1,166,167	-		IAI47_05540	0.53	-0.8
1,166,167	-		IAI47_05540	0.53	+0.8
1,166,167	-		IAI47_05540	0.53	+0.5
1,166,167	-		IAI47_05540	0.53	+2.1
1,166,170	+		IAI47_05540	0.54	+2.2
1,166,170	+		IAI47_05540	0.54	-1.4
1,166,170	+		IAI47_05540	0.54	+1.7
1,166,170	+		IAI47_05540	0.54	+0.1
1,166,171	-		IAI47_05540	0.54	+2.0
1,166,171	-		IAI47_05540	0.54	-2.3
1,166,171	-		IAI47_05540	0.54	+4.0
1,166,171	-		IAI47_05540	0.54	+0.5
1,166,171	-		IAI47_05540	0.54	+1.0
1,166,172	+		IAI47_05540	0.55	+1.1
1,166,173	-		IAI47_05540	0.55	-0.3
1,166,173	-		IAI47_05540	0.55	-0.8
1,166,221	-		IAI47_05540	0.66	-2.4
1,166,221	-		IAI47_05540	0.66	+1.1
1,166,224	+		IAI47_05540	0.67	+0.1
1,166,224	+		IAI47_05540	0.67	+0.1
1,166,224	+		IAI47_05540	0.67	-0.2
1,166,224	+		IAI47_05540	0.67	+1.0
1,166,225	-		IAI47_05540	0.67	-2.0
1,166,278	+		IAI47_05540	0.80	-1.4
1,166,278	+		IAI47_05540	0.80	-0.4
1,166,278	+		IAI47_05540	0.80	+0.0
1,166,279	-		IAI47_05540	0.80	+2.0
1,166,279	-		IAI47_05540	0.80	+0.0
1,166,279	-		IAI47_05540	0.80	+0.3
1,166,279	-		IAI47_05540	0.80	+1.1
1,166,349	-				+0.3
1,166,363	+				-0.9
1,166,363	+				-0.7
1,166,363	+				-1.2
1,166,364	-				-0.4
1,166,364	-				-0.4
1,166,364	-				+1.4
1,166,365	+				+1.6
1,166,365	+				+1.3
1,166,365	+				+0.9
1,166,365	+				+2.9
1,166,365	+				-0.1
1,166,365	+				-0.1
1,166,365	+				-1.6
1,166,366	-				-2.6
1,166,366	-				+0.5
1,166,366	-				-0.1
1,166,366	-				-0.3
1,166,408	+				-1.2
1,166,408	+				+0.3
1,166,408	+				+2.5
1,166,408	+				-0.8
1,166,408	+				-0.3
1,166,409	-				+0.8
1,166,409	-				+0.0
1,166,409	-				-1.1
1,166,409	-				-0.5
1,166,409	-				-0.7
1,166,409	-				+1.8
1,166,418	+				+0.5
1,166,419	-				+0.1
1,166,419	-				+2.4
1,166,419	-				-1.3
1,166,420	-				-0.0
1,166,421	+				+1.2
1,166,421	+				-0.5
1,166,421	+				+0.9
1,166,421	+				+1.5
1,166,421	+				+1.3
1,166,422	-				+1.1
1,166,422	-				-1.6
1,166,430	+				+0.7
1,166,430	+				-1.3
1,166,489	+				-0.0
1,166,489	+				+0.5
1,166,489	+				+1.5
1,166,489	+				+0.8
1,166,536	+				-0.0
1,166,536	+				+1.5
1,166,536	+				+0.9
1,166,536	+				-0.7
1,166,536	+				+0.8
1,166,536	+				+0.2
1,166,536	+				-1.9
1,166,536	+				+1.5
1,166,537	-				-2.2
1,166,537	-				+0.0
1,166,537	-				+0.5
1,166,537	-				+0.1
1,166,537	-				-1.8
1,166,537	-				+0.6
1,166,537	-				-0.5
1,166,563	-				+0.6
1,166,827	+		IAI47_05545	0.29	-0.9
1,166,827	+		IAI47_05545	0.29	+3.0
1,166,827	+		IAI47_05545	0.29	-0.1
1,166,921	+		IAI47_05545	0.39	-0.6
1,166,922	-		IAI47_05545	0.39	-0.5
1,166,922	-		IAI47_05545	0.39	-0.8
1,166,984	+		IAI47_05545	0.45	+1.3
1,166,985	-		IAI47_05545	0.45	-0.1
1,167,017	-		IAI47_05545	0.49	+0.1
1,167,017	-		IAI47_05545	0.49	+0.2
1,167,020	+		IAI47_05545	0.49	-0.2
1,167,021	-		IAI47_05545	0.49	-0.1
1,167,021	-		IAI47_05545	0.49	-0.1
1,167,021	-		IAI47_05545	0.49	+0.4
1,167,030	+		IAI47_05545	0.50	-1.3
1,167,030	+		IAI47_05545	0.50	+0.4
1,167,030	+		IAI47_05545	0.50	-1.2
1,167,030	+		IAI47_05545	0.50	-1.0
1,167,031	-		IAI47_05545	0.50	+0.9
1,167,031	-		IAI47_05545	0.50	-1.3
1,167,034	+		IAI47_05545	0.50	-1.2
1,167,034	+		IAI47_05545	0.50	-1.2
1,167,034	+		IAI47_05545	0.50	+1.2
1,167,034	+		IAI47_05545	0.50	-1.9
1,167,034	+		IAI47_05545	0.50	+2.1
1,167,034	+		IAI47_05545	0.50	-0.5
1,167,035	-		IAI47_05545	0.51	-0.8
1,167,035	-		IAI47_05545	0.51	+0.1
1,167,035	-		IAI47_05545	0.51	-0.6
1,167,054	+		IAI47_05545	0.52	+0.3
1,167,055	-		IAI47_05545	0.53	-0.6
1,167,055	-		IAI47_05545	0.53	+1.1
1,167,118	+		IAI47_05545	0.59	+1.2
1,167,119	-		IAI47_05545	0.59	-1.8
1,167,125	+		IAI47_05545	0.60	+0.1
1,167,133	+		IAI47_05545	0.60	-1.7
1,167,133	+		IAI47_05545	0.60	-1.2
1,167,133	+		IAI47_05545	0.60	-1.0
1,167,133	+		IAI47_05545	0.60	+0.6
1,167,152	+		IAI47_05545	0.62	-0.9
1,167,181	+		IAI47_05545	0.65	-1.2
1,167,185	+		IAI47_05545	0.66	-0.2
1,167,185	+		IAI47_05545	0.66	-1.4
1,167,186	-		IAI47_05545	0.66	-0.7
1,167,186	-		IAI47_05545	0.66	+0.8
1,167,205	+		IAI47_05545	0.68	+2.7
1,167,206	-		IAI47_05545	0.68	+1.9
1,167,224	+		IAI47_05545	0.70	-1.9
1,167,224	+		IAI47_05545	0.70	+1.0
1,167,224	+		IAI47_05545	0.70	-0.4
1,167,224	+		IAI47_05545	0.70	+0.6
1,167,224	+		IAI47_05545	0.70	+1.5
1,167,224	+		IAI47_05545	0.70	+1.4
1,167,224	+		IAI47_05545	0.70	+0.3
1,167,224	+		IAI47_05545	0.70	-1.3
1,167,225	-		IAI47_05545	0.70	-0.9
1,167,225	-		IAI47_05545	0.70	+1.9
1,167,225	-		IAI47_05545	0.70	-0.1
1,167,225	-		IAI47_05545	0.70	+0.0
1,167,225	-		IAI47_05545	0.70	+1.0
1,167,225	-		IAI47_05545	0.70	+0.6
1,167,225	-		IAI47_05545	0.70	-0.7
1,167,225	-		IAI47_05545	0.70	+0.9
1,167,225	-		IAI47_05545	0.70	+1.6
1,167,225	-		IAI47_05545	0.70	+2.5
1,167,225	-		IAI47_05545	0.70	+0.2
1,167,225	-		IAI47_05545	0.70	-0.9
1,167,225	-		IAI47_05545	0.70	-2.5
1,167,227	-		IAI47_05545	0.70	-1.2
1,167,227	-		IAI47_05545	0.70	-1.9
1,167,246	+		IAI47_05545	0.72	-0.5
1,167,247	-		IAI47_05545	0.72	+0.6
1,167,288	-		IAI47_05545	0.76	+0.7
1,167,288	-		IAI47_05545	0.76	+0.3
1,167,288	-		IAI47_05545	0.76	-1.6
1,167,328	+		IAI47_05545	0.80	-0.7
1,167,328	+		IAI47_05545	0.80	+0.3
1,167,328	+		IAI47_05545	0.80	+0.4
1,167,329	-		IAI47_05545	0.80	+1.0
1,167,329	-		IAI47_05545	0.80	+1.9
1,167,329	-		IAI47_05545	0.80	+0.9
1,167,329	-		IAI47_05545	0.80	-0.1
1,167,329	-		IAI47_05545	0.80	+0.2
1,167,329	-		IAI47_05545	0.80	+2.2
1,167,329	-		IAI47_05545	0.80	-1.2
1,167,329	-		IAI47_05545	0.80	-0.5
1,167,332	+		IAI47_05545	0.81	-0.6
1,167,332	+		IAI47_05545	0.81	-1.5
1,167,332	+		IAI47_05545	0.81	+2.6
1,167,333	-		IAI47_05545	0.81	+0.4
1,167,333	-		IAI47_05545	0.81	+0.5
1,167,339	+		IAI47_05545	0.81	+1.4