Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00210 and IAI47_00215 are separated by 104 nucleotides IAI47_00215 and IAI47_00220 are separated by 17 nucleotides
IAI47_00210: IAI47_00210 - MFS transporter, at 46,064 to 47,305
_00210
IAI47_00215: IAI47_00215 - phosphate signaling complex protein PhoU, at 47,410 to 48,144
_00215
IAI47_00220: IAI47_00220 - phosphate ABC transporter ATP-binding protein PstB, at 48,162 to 48,935
_00220
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 45.070 kb on - strand at 45.071 kb on + strand at 45.072 kb on - strand at 45.132 kb on - strand at 45.178 kb on - strand at 45.184 kb on + strand at 45.223 kb on + strand at 45.224 kb on - strand at 45.266 kb on + strand at 45.266 kb on + strand at 45.267 kb on - strand at 45.297 kb on - strand at 45.315 kb on - strand at 45.338 kb on + strand at 45.345 kb on - strand at 45.351 kb on + strand at 45.352 kb on - strand at 45.401 kb on - strand at 45.424 kb on + strand at 45.424 kb on + strand at 45.425 kb on - strand at 45.445 kb on - strand at 45.476 kb on + strand at 45.477 kb on - strand at 45.483 kb on + strand at 45.543 kb on - strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.551 kb on + strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.552 kb on - strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.553 kb on + strand at 45.570 kb on - strand at 45.570 kb on - strand at 45.652 kb on + strand at 45.652 kb on + strand at 45.653 kb on - strand at 45.653 kb on - strand at 45.653 kb on - strand at 45.653 kb on - strand at 45.655 kb on - strand at 45.665 kb on + strand at 45.666 kb on - strand at 45.685 kb on + strand at 45.685 kb on + strand at 45.686 kb on - strand at 45.686 kb on - strand at 45.699 kb on + strand at 45.700 kb on - strand at 45.700 kb on - strand at 45.704 kb on + strand at 45.704 kb on + strand at 45.704 kb on + strand at 45.704 kb on + strand at 45.704 kb on + strand at 45.705 kb on - strand at 45.705 kb on - strand at 45.705 kb on - strand at 45.706 kb on + strand at 45.740 kb on - strand at 45.750 kb on + strand at 45.750 kb on + strand at 45.750 kb on + strand at 45.751 kb on - strand at 45.760 kb on + strand at 45.767 kb on + strand at 45.870 kb on - strand at 45.881 kb on + strand at 45.881 kb on + strand at 45.881 kb on + strand at 45.881 kb on + strand at 45.882 kb on - strand at 45.895 kb on - strand at 45.906 kb on + strand at 45.917 kb on + strand at 45.917 kb on + strand at 45.917 kb on + strand at 45.917 kb on + strand at 45.917 kb on + strand at 45.917 kb on + strand at 45.917 kb on + strand at 45.918 kb on - strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.919 kb on + strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.920 kb on - strand at 45.924 kb on + strand at 45.925 kb on - strand at 45.938 kb on + strand at 45.939 kb on - strand at 45.949 kb on - strand at 45.984 kb on + strand at 45.984 kb on + strand at 45.985 kb on - strand at 45.985 kb on - strand at 45.985 kb on - strand at 45.985 kb on - strand at 45.985 kb on - strand at 45.985 kb on - strand at 46.024 kb on + strand at 46.024 kb on + strand at 46.025 kb on - strand at 46.025 kb on - strand at 46.084 kb on + strand at 46.084 kb on + strand at 46.084 kb on + strand at 46.084 kb on + strand at 46.085 kb on - strand at 46.085 kb on - strand at 46.133 kb on - strand at 46.133 kb on - strand at 46.143 kb on + strand at 46.143 kb on + strand at 46.144 kb on - strand at 46.144 kb on - strand at 46.144 kb on - strand at 46.162 kb on + strand at 46.226 kb on + strand, within IAI47_00210 at 46.227 kb on - strand, within IAI47_00210 at 46.271 kb on + strand, within IAI47_00210 at 46.271 kb on + strand, within IAI47_00210 at 46.271 kb on + strand, within IAI47_00210 at 46.271 kb on + strand, within IAI47_00210 at 46.272 kb on - strand, within IAI47_00210 at 46.272 kb on - strand, within IAI47_00210 at 46.288 kb on + strand, within IAI47_00210 at 46.389 kb on + strand, within IAI47_00210 at 46.389 kb on + strand, within IAI47_00210 at 46.389 kb on + strand, within IAI47_00210 at 46.389 kb on + strand, within IAI47_00210 at 46.390 kb on - strand, within IAI47_00210 at 46.423 kb on - strand, within IAI47_00210 at 46.560 kb on + strand, within IAI47_00210 at 46.560 kb on + strand, within IAI47_00210 at 46.561 kb on - strand, within IAI47_00210 at 46.561 kb on - strand, within IAI47_00210 at 46.561 kb on - strand, within IAI47_00210 at 46.587 kb on + strand, within IAI47_00210 at 46.587 kb on + strand, within IAI47_00210 at 46.587 kb on + strand, within IAI47_00210 at 46.588 kb on - strand, within IAI47_00210 at 46.588 kb on - strand, within IAI47_00210 at 46.590 kb on + strand, within IAI47_00210 at 46.590 kb on + strand, within IAI47_00210 at 46.619 kb on - strand, within IAI47_00210 at 46.619 kb on - strand, within IAI47_00210 at 46.639 kb on + strand, within IAI47_00210 at 46.639 kb on + strand, within IAI47_00210 at 46.705 kb on + strand, within IAI47_00210 at 46.706 kb on - strand, within IAI47_00210 at 46.719 kb on + strand, within IAI47_00210 at 46.719 kb on + strand, within IAI47_00210 at 46.720 kb on - strand, within IAI47_00210 at 46.806 kb on - strand, within IAI47_00210 at 46.810 kb on + strand, within IAI47_00210 at 46.810 kb on + strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.811 kb on - strand, within IAI47_00210 at 46.832 kb on - strand, within IAI47_00210 at 46.891 kb on + strand, within IAI47_00210 at 46.891 kb on + strand, within IAI47_00210 at 46.891 kb on + strand, within IAI47_00210 at 46.892 kb on - strand, within IAI47_00210 at 46.892 kb on - strand, within IAI47_00210 at 46.892 kb on - strand, within IAI47_00210 at 46.892 kb on - strand, within IAI47_00210 at 46.931 kb on - strand, within IAI47_00210 at 47.029 kb on + strand, within IAI47_00210 at 47.029 kb on + strand, within IAI47_00210 at 47.029 kb on + strand, within IAI47_00210 at 47.029 kb on + strand, within IAI47_00210 at 47.029 kb on + strand, within IAI47_00210 at 47.030 kb on - strand, within IAI47_00210 at 47.030 kb on - strand, within IAI47_00210 at 47.030 kb on - strand, within IAI47_00210 at 47.030 kb on - strand, within IAI47_00210 at 47.074 kb on - strand, within IAI47_00210 at 47.195 kb on - strand at 47.195 kb on - strand at 47.204 kb on + strand at 47.204 kb on + strand at 47.205 kb on - strand at 47.205 kb on - strand at 47.322 kb on + strand at 47.323 kb on - strand at 47.336 kb on + strand at 47.336 kb on + strand at 47.336 kb on + strand at 47.336 kb on + strand at 47.337 kb on - strand at 47.337 kb on - strand at 47.338 kb on + strand at 47.338 kb on + strand at 47.338 kb on + strand at 47.339 kb on - strand at 47.339 kb on - strand at 47.401 kb on + strand at 47.401 kb on + strand at 47.402 kb on - strand at 47.402 kb on - strand at 47.408 kb on + strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.446 kb on + strand at 47.446 kb on + strand at 47.447 kb on - strand at 48.179 kb on + strand at 48.180 kb on - strand at 48.180 kb on - strand at 48.182 kb on + strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.183 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.185 kb on - strand at 48.259 kb on + strand, within IAI47_00220 at 48.259 kb on + strand, within IAI47_00220 at 48.259 kb on + strand, within IAI47_00220 at 48.259 kb on + strand, within IAI47_00220 at 48.259 kb on + strand, within IAI47_00220 at 48.259 kb on + strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220 at 48.260 kb on - strand, within IAI47_00220
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 45,070 - +0.3 45,071 + +0.0 45,072 - +0.6 45,132 - -0.0 45,178 - +0.8 45,184 + -0.5 45,223 + +0.8 45,224 - +0.1 45,266 + +1.3 45,266 + -0.3 45,267 - -0.7 45,297 - +0.4 45,315 - +0.2 45,338 + -1.6 45,345 - -0.1 45,351 + +1.6 45,352 - +0.5 45,401 - +0.7 45,424 + +0.2 45,424 + +0.7 45,425 - +1.1 45,445 - -0.7 45,476 + -1.2 45,477 - +0.8 45,483 + +0.1 45,543 - -1.3 45,551 + -1.0 45,551 + -2.1 45,551 + -0.8 45,551 + -0.9 45,551 + -0.5 45,551 + +0.2 45,551 + -0.8 45,551 + -1.2 45,552 - -1.9 45,552 - +1.1 45,552 - +0.2 45,552 - -1.3 45,552 - -2.1 45,552 - -1.0 45,552 - -0.5 45,552 - +0.3 45,552 - +0.4 45,553 + +0.4 45,553 + -0.4 45,553 + +1.0 45,553 + -1.6 45,553 + -0.8 45,553 + -0.3 45,553 + -0.6 45,553 + +2.0 45,570 - -1.0 45,570 - -1.0 45,652 + -1.4 45,652 + +0.4 45,653 - +0.6 45,653 - -0.0 45,653 - -0.0 45,653 - +2.2 45,655 - +0.0 45,665 + -0.0 45,666 - -0.1 45,685 + -0.3 45,685 + -1.8 45,686 - +1.0 45,686 - +1.2 45,699 + +0.1 45,700 - -1.0 45,700 - +1.3 45,704 + +1.0 45,704 + +1.1 45,704 + -2.7 45,704 + -0.4 45,704 + +0.2 45,705 - +1.4 45,705 - -0.6 45,705 - -0.5 45,706 + -1.7 45,740 - -1.4 45,750 + +0.0 45,750 + +0.3 45,750 + +1.0 45,751 - +0.4 45,760 + -1.1 45,767 + -0.0 45,870 - +1.7 45,881 + -0.4 45,881 + -1.2 45,881 + -1.4 45,881 + -0.3 45,882 - -1.8 45,895 - +0.5 45,906 + -2.4 45,917 + -0.8 45,917 + +0.9 45,917 + +0.3 45,917 + -2.1 45,917 + -0.1 45,917 + +0.0 45,917 + -1.0 45,918 - -1.5 45,919 + +0.4 45,919 + +1.1 45,919 + -0.2 45,919 + +2.5 45,919 + +0.0 45,919 + +0.9 45,919 + +1.0 45,919 + +2.9 45,919 + +1.0 45,919 + -0.8 45,919 + -1.1 45,919 + +2.1 45,919 + +1.7 45,920 - -0.9 45,920 - +0.2 45,920 - +0.0 45,920 - -0.4 45,920 - -0.6 45,920 - -0.2 45,920 - +1.6 45,920 - +1.7 45,924 + +0.3 45,925 - -0.7 45,938 + +0.1 45,939 - -1.0 45,949 - +0.2 45,984 + -0.5 45,984 + +0.1 45,985 - +0.1 45,985 - +1.2 45,985 - +0.5 45,985 - +0.1 45,985 - +0.1 45,985 - +1.3 46,024 + -1.0 46,024 + +0.4 46,025 - -0.3 46,025 - -0.8 46,084 + +1.9 46,084 + -0.4 46,084 + -1.3 46,084 + +1.0 46,085 - -2.4 46,085 - +0.3 46,133 - -3.5 46,133 - -0.4 46,143 + -0.5 46,143 + -2.1 46,144 - -0.1 46,144 - -1.5 46,144 - +0.2 46,162 + -1.2 46,226 + IAI47_00210 0.13 +0.2 46,227 - IAI47_00210 0.13 +0.1 46,271 + IAI47_00210 0.17 -0.5 46,271 + IAI47_00210 0.17 -0.8 46,271 + IAI47_00210 0.17 -0.1 46,271 + IAI47_00210 0.17 -1.6 46,272 - IAI47_00210 0.17 +0.6 46,272 - IAI47_00210 0.17 +0.1 46,288 + IAI47_00210 0.18 -0.6 46,389 + IAI47_00210 0.26 -1.1 46,389 + IAI47_00210 0.26 +0.6 46,389 + IAI47_00210 0.26 -0.9 46,389 + IAI47_00210 0.26 +1.6 46,390 - IAI47_00210 0.26 -0.5 46,423 - IAI47_00210 0.29 +0.1 46,560 + IAI47_00210 0.40 +0.1 46,560 + IAI47_00210 0.40 -1.3 46,561 - IAI47_00210 0.40 -1.7 46,561 - IAI47_00210 0.40 -1.4 46,561 - IAI47_00210 0.40 -0.6 46,587 + IAI47_00210 0.42 -1.6 46,587 + IAI47_00210 0.42 -2.0 46,587 + IAI47_00210 0.42 -0.1 46,588 - IAI47_00210 0.42 +0.9 46,588 - IAI47_00210 0.42 +0.6 46,590 + IAI47_00210 0.42 -0.5 46,590 + IAI47_00210 0.42 +1.7 46,619 - IAI47_00210 0.45 +0.2 46,619 - IAI47_00210 0.45 +1.7 46,639 + IAI47_00210 0.46 -0.1 46,639 + IAI47_00210 0.46 -0.9 46,705 + IAI47_00210 0.52 -0.9 46,706 - IAI47_00210 0.52 -3.0 46,719 + IAI47_00210 0.53 -0.7 46,719 + IAI47_00210 0.53 +1.0 46,720 - IAI47_00210 0.53 -2.4 46,806 - IAI47_00210 0.60 -2.1 46,810 + IAI47_00210 0.60 -2.5 46,810 + IAI47_00210 0.60 +0.2 46,811 - IAI47_00210 0.60 +2.3 46,811 - IAI47_00210 0.60 -1.5 46,811 - IAI47_00210 0.60 +0.4 46,811 - IAI47_00210 0.60 -1.4 46,811 - IAI47_00210 0.60 +0.3 46,811 - IAI47_00210 0.60 +1.5 46,811 - IAI47_00210 0.60 -1.3 46,832 - IAI47_00210 0.62 -0.2 46,891 + IAI47_00210 0.67 +0.3 46,891 + IAI47_00210 0.67 -0.4 46,891 + IAI47_00210 0.67 +0.2 46,892 - IAI47_00210 0.67 -0.2 46,892 - IAI47_00210 0.67 -0.4 46,892 - IAI47_00210 0.67 +0.5 46,892 - IAI47_00210 0.67 +0.4 46,931 - IAI47_00210 0.70 -1.6 47,029 + IAI47_00210 0.78 -0.8 47,029 + IAI47_00210 0.78 +0.2 47,029 + IAI47_00210 0.78 -0.4 47,029 + IAI47_00210 0.78 +0.0 47,029 + IAI47_00210 0.78 +0.2 47,030 - IAI47_00210 0.78 -0.1 47,030 - IAI47_00210 0.78 +0.5 47,030 - IAI47_00210 0.78 +0.8 47,030 - IAI47_00210 0.78 +1.3 47,074 - IAI47_00210 0.81 -0.7 47,195 - +0.7 47,195 - -1.0 47,204 + -0.2 47,204 + +0.2 47,205 - +0.5 47,205 - -0.3 47,322 + -0.4 47,323 - -0.6 47,336 + -0.4 47,336 + -1.7 47,336 + -1.7 47,336 + +0.4 47,337 - -1.5 47,337 - -0.6 47,338 + -0.3 47,338 + +1.5 47,338 + -0.7 47,339 - +0.9 47,339 - +0.1 47,401 + -1.1 47,401 + +0.1 47,402 - -0.7 47,402 - +0.5 47,408 + +0.1 47,409 - -2.4 47,409 - -0.6 47,409 - -0.7 47,409 - -1.3 47,409 - +0.1 47,409 - +0.4 47,446 + +1.4 47,446 + +1.7 47,447 - -1.7 48,179 + +1.7 48,180 - +0.8 48,180 - +0.9 48,182 + +0.0 48,183 - -0.3 48,183 - +1.5 48,183 - -1.7 48,183 - -0.1 48,183 - -1.4 48,183 - -0.6 48,183 - -0.7 48,183 - -0.1 48,183 - +1.7 48,183 - +1.3 48,183 - +1.8 48,183 - -0.2 48,183 - -1.1 48,183 - -0.7 48,183 - -0.4 48,183 - +0.5 48,183 - +0.9 48,185 - -0.6 48,185 - -0.6 48,185 - -0.2 48,185 - -1.0 48,185 - -1.1 48,185 - +0.1 48,185 - +1.2 48,185 - +0.1 48,259 + IAI47_00220 0.13 -0.3 48,259 + IAI47_00220 0.13 -0.5 48,259 + IAI47_00220 0.13 -2.5 48,259 + IAI47_00220 0.13 -0.1 48,259 + IAI47_00220 0.13 +0.7 48,259 + IAI47_00220 0.13 -0.1 48,260 - IAI47_00220 0.13 +1.3 48,260 - IAI47_00220 0.13 -0.1 48,260 - IAI47_00220 0.13 -1.6 48,260 - IAI47_00220 0.13 +0.6 48,260 - IAI47_00220 0.13 -0.3 48,260 - IAI47_00220 0.13 -0.2 48,260 - IAI47_00220 0.13 -2.1
Or see this region's nucleotide sequence