Strain Fitness in Pantoea sp. MT58 around IAI47_20330

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20320 and IAI47_20325 are separated by 39 nucleotidesIAI47_20325 and IAI47_20330 are separated by 163 nucleotidesIAI47_20330 and IAI47_20335 are separated by 68 nucleotides IAI47_20320: IAI47_20320 - alpha/beta hydrolase, at 302,641 to 303,462 _20320 IAI47_20325: IAI47_20325 - pirin family protein, at 303,502 to 304,227 _20325 IAI47_20330: IAI47_20330 - LacI family DNA-binding transcriptional regulator, at 304,391 to 305,371 _20330 IAI47_20335: IAI47_20335 - sugar phosphate isomerase/epimerase, at 305,440 to 306,501 _20335 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 303.504 kb on - strandat 303.515 kb on - strandat 303.544 kb on + strandat 303.545 kb on - strandat 303.621 kb on + strand, within IAI47_20325at 303.622 kb on - strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.666 kb on + strand, within IAI47_20325at 303.667 kb on - strand, within IAI47_20325at 303.667 kb on - strand, within IAI47_20325at 303.667 kb on - strand, within IAI47_20325at 303.667 kb on - strand, within IAI47_20325at 303.668 kb on + strand, within IAI47_20325at 303.668 kb on + strand, within IAI47_20325at 303.668 kb on + strand, within IAI47_20325at 303.668 kb on + strand, within IAI47_20325at 303.668 kb on + strand, within IAI47_20325at 303.669 kb on - strand, within IAI47_20325at 303.669 kb on - strand, within IAI47_20325at 303.669 kb on - strand, within IAI47_20325at 303.669 kb on - strand, within IAI47_20325at 303.674 kb on + strand, within IAI47_20325at 303.674 kb on + strand, within IAI47_20325at 303.674 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.693 kb on + strand, within IAI47_20325at 303.694 kb on - strand, within IAI47_20325at 303.694 kb on - strand, within IAI47_20325at 303.694 kb on - strand, within IAI47_20325at 303.694 kb on - strand, within IAI47_20325at 303.694 kb on - strand, within IAI47_20325at 303.694 kb on - strand, within IAI47_20325at 303.696 kb on + strand, within IAI47_20325at 303.697 kb on - strand, within IAI47_20325at 303.697 kb on - strand, within IAI47_20325at 303.697 kb on - strand, within IAI47_20325at 303.697 kb on - strand, within IAI47_20325at 303.697 kb on - strand, within IAI47_20325at 303.731 kb on + strand, within IAI47_20325at 303.731 kb on + strand, within IAI47_20325at 303.731 kb on + strand, within IAI47_20325at 303.731 kb on + strand, within IAI47_20325at 303.731 kb on + strand, within IAI47_20325at 303.731 kb on + strand, within IAI47_20325at 303.732 kb on - strand, within IAI47_20325at 303.732 kb on - strand, within IAI47_20325at 303.732 kb on - strand, within IAI47_20325at 303.732 kb on - strand, within IAI47_20325at 303.732 kb on - strand, within IAI47_20325at 303.732 kb on - strand, within IAI47_20325at 303.741 kb on + strand, within IAI47_20325at 303.741 kb on + strand, within IAI47_20325at 303.757 kb on + strand, within IAI47_20325at 303.758 kb on - strand, within IAI47_20325at 303.786 kb on + strand, within IAI47_20325at 303.810 kb on + strand, within IAI47_20325at 303.810 kb on + strand, within IAI47_20325at 303.810 kb on + strand, within IAI47_20325at 303.811 kb on - strand, within IAI47_20325at 303.839 kb on + strand, within IAI47_20325at 303.840 kb on - strand, within IAI47_20325at 303.868 kb on + strand, within IAI47_20325at 303.952 kb on + strand, within IAI47_20325at 303.952 kb on + strand, within IAI47_20325at 303.953 kb on - strand, within IAI47_20325at 303.953 kb on - strand, within IAI47_20325at 303.953 kb on - strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.028 kb on + strand, within IAI47_20325at 304.029 kb on - strand, within IAI47_20325at 304.029 kb on - strand, within IAI47_20325at 304.035 kb on + strand, within IAI47_20325at 304.036 kb on - strand, within IAI47_20325at 304.047 kb on + strand, within IAI47_20325at 304.048 kb on - strand, within IAI47_20325at 304.048 kb on - strand, within IAI47_20325at 304.048 kb on - strand, within IAI47_20325at 304.048 kb on - strand, within IAI47_20325at 304.048 kb on - strand, within IAI47_20325at 304.048 kb on - strand, within IAI47_20325at 304.098 kb on + strand, within IAI47_20325at 304.098 kb on + strand, within IAI47_20325at 304.098 kb on + strand, within IAI47_20325at 304.142 kb on + strand, within IAI47_20325at 304.142 kb on + strand, within IAI47_20325at 304.143 kb on - strand, within IAI47_20325at 304.227 kb on + strandat 304.227 kb on + strandat 304.228 kb on - strandat 304.228 kb on - strandat 304.285 kb on - strandat 304.285 kb on - strandat 304.285 kb on - strandat 304.426 kb on + strandat 304.426 kb on + strandat 304.426 kb on + strandat 304.427 kb on - strandat 304.427 kb on - strandat 304.427 kb on - strandat 304.643 kb on - strand, within IAI47_20330at 304.708 kb on + strand, within IAI47_20330at 304.737 kb on + strand, within IAI47_20330at 304.738 kb on - strand, within IAI47_20330at 304.785 kb on + strand, within IAI47_20330at 304.809 kb on + strand, within IAI47_20330at 304.810 kb on - strand, within IAI47_20330at 304.810 kb on - strand, within IAI47_20330at 304.815 kb on + strand, within IAI47_20330at 304.816 kb on - strand, within IAI47_20330at 304.869 kb on + strand, within IAI47_20330at 304.869 kb on + strand, within IAI47_20330at 304.869 kb on + strand, within IAI47_20330at 304.870 kb on - strand, within IAI47_20330at 304.930 kb on + strand, within IAI47_20330at 304.930 kb on + strand, within IAI47_20330at 304.971 kb on - strand, within IAI47_20330at 305.089 kb on + strand, within IAI47_20330at 305.089 kb on + strand, within IAI47_20330at 305.089 kb on + strand, within IAI47_20330at 305.089 kb on + strand, within IAI47_20330at 305.090 kb on - strand, within IAI47_20330at 305.090 kb on - strand, within IAI47_20330at 305.090 kb on - strand, within IAI47_20330at 305.135 kb on - strand, within IAI47_20330at 305.135 kb on - strand, within IAI47_20330at 305.170 kb on + strand, within IAI47_20330at 305.171 kb on - strand, within IAI47_20330at 305.209 kb on + strand, within IAI47_20330at 305.242 kb on - strand, within IAI47_20330at 305.242 kb on - strand, within IAI47_20330at 305.242 kb on - strand, within IAI47_20330at 305.242 kb on - strand, within IAI47_20330at 305.305 kb on + strandat 305.306 kb on - strandat 305.306 kb on - strandat 305.364 kb on - strandat 305.364 kb on - strandat 305.365 kb on + strandat 305.365 kb on + strandat 305.365 kb on + strandat 305.365 kb on + strandat 305.365 kb on + strandat 305.366 kb on - strandat 305.366 kb on - strandat 305.366 kb on - strandat 305.366 kb on - strandat 305.366 kb on - strandat 305.371 kb on + strandat 305.371 kb on + strandat 305.372 kb on - strandat 305.372 kb on - strandat 305.372 kb on - strandat 305.372 kb on - strandat 305.372 kb on - strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.410 kb on + strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.411 kb on - strandat 305.473 kb on + strandat 305.474 kb on - strandat 305.474 kb on - strandat 305.474 kb on - strandat 305.535 kb on + strandat 305.535 kb on + strandat 305.536 kb on - strandat 305.608 kb on + strand, within IAI47_20335at 305.609 kb on - strand, within IAI47_20335at 305.625 kb on - strand, within IAI47_20335at 305.626 kb on - strand, within IAI47_20335at 305.630 kb on + strand, within IAI47_20335at 305.630 kb on + strand, within IAI47_20335at 305.631 kb on - strand, within IAI47_20335at 305.631 kb on - strand, within IAI47_20335at 305.631 kb on - strand, within IAI47_20335at 305.652 kb on + strand, within IAI47_20335at 305.653 kb on - strand, within IAI47_20335at 305.720 kb on + strand, within IAI47_20335at 305.757 kb on - strand, within IAI47_20335at 305.757 kb on - strand, within IAI47_20335at 305.798 kb on + strand, within IAI47_20335at 305.798 kb on + strand, within IAI47_20335at 305.799 kb on - strand, within IAI47_20335at 305.799 kb on - strand, within IAI47_20335at 305.819 kb on + strand, within IAI47_20335at 305.819 kb on + strand, within IAI47_20335at 305.819 kb on + strand, within IAI47_20335at 305.819 kb on + strand, within IAI47_20335at 305.819 kb on + strand, within IAI47_20335at 305.862 kb on + strand, within IAI47_20335at 305.862 kb on + strand, within IAI47_20335at 305.883 kb on + strand, within IAI47_20335at 305.948 kb on + strand, within IAI47_20335at 305.948 kb on + strand, within IAI47_20335at 306.060 kb on - strand, within IAI47_20335at 306.187 kb on + strand, within IAI47_20335at 306.187 kb on + strand, within IAI47_20335at 306.187 kb on + strand, within IAI47_20335at 306.188 kb on - strand, within IAI47_20335at 306.188 kb on - strand, within IAI47_20335at 306.208 kb on - strand, within IAI47_20335at 306.224 kb on + strand, within IAI47_20335at 306.241 kb on + strand, within IAI47_20335at 306.265 kb on - strand, within IAI47_20335at 306.323 kb on + strand, within IAI47_20335at 306.323 kb on + strand, within IAI47_20335at 306.323 kb on + strand, within IAI47_20335at 306.323 kb on + strand, within IAI47_20335at 306.324 kb on - strand, within IAI47_20335at 306.324 kb on - strand, within IAI47_20335at 306.324 kb on - strand, within IAI47_20335at 306.324 kb on - strand, within IAI47_20335at 306.324 kb on - strand, within IAI47_20335at 306.349 kb on - strand, within IAI47_20335at 306.360 kb on + strand, within IAI47_20335

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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303,504 - -0.4
303,515 - +0.5
303,544 + -0.4
303,545 - +0.2
303,621 + IAI47_20325 0.16 -0.9
303,622 - IAI47_20325 0.17 -0.6
303,666 + IAI47_20325 0.23 -0.6
303,666 + IAI47_20325 0.23 +0.1
303,666 + IAI47_20325 0.23 +1.9
303,666 + IAI47_20325 0.23 +1.7
303,666 + IAI47_20325 0.23 -0.2
303,666 + IAI47_20325 0.23 +0.3
303,666 + IAI47_20325 0.23 -1.1
303,667 - IAI47_20325 0.23 +1.2
303,667 - IAI47_20325 0.23 -0.6
303,667 - IAI47_20325 0.23 -0.4
303,667 - IAI47_20325 0.23 +1.0
303,668 + IAI47_20325 0.23 +1.1
303,668 + IAI47_20325 0.23 +0.1
303,668 + IAI47_20325 0.23 -0.3
303,668 + IAI47_20325 0.23 -1.4
303,668 + IAI47_20325 0.23 -1.0
303,669 - IAI47_20325 0.23 -1.9
303,669 - IAI47_20325 0.23 -0.5
303,669 - IAI47_20325 0.23 -0.8
303,669 - IAI47_20325 0.23 -0.6
303,674 + IAI47_20325 0.24 +2.2
303,674 + IAI47_20325 0.24 -0.4
303,674 + IAI47_20325 0.24 -2.4
303,693 + IAI47_20325 0.26 +0.4
303,693 + IAI47_20325 0.26 -0.6
303,693 + IAI47_20325 0.26 +0.3
303,693 + IAI47_20325 0.26 -1.2
303,693 + IAI47_20325 0.26 -0.4
303,693 + IAI47_20325 0.26 -1.7
303,693 + IAI47_20325 0.26 -0.4
303,694 - IAI47_20325 0.26 -0.6
303,694 - IAI47_20325 0.26 -0.1
303,694 - IAI47_20325 0.26 -0.2
303,694 - IAI47_20325 0.26 +0.7
303,694 - IAI47_20325 0.26 -1.2
303,694 - IAI47_20325 0.26 +0.3
303,696 + IAI47_20325 0.27 -0.8
303,697 - IAI47_20325 0.27 -0.6
303,697 - IAI47_20325 0.27 -1.0
303,697 - IAI47_20325 0.27 -2.3
303,697 - IAI47_20325 0.27 +0.8
303,697 - IAI47_20325 0.27 +3.2
303,731 + IAI47_20325 0.32 +2.2
303,731 + IAI47_20325 0.32 +1.6
303,731 + IAI47_20325 0.32 -0.9
303,731 + IAI47_20325 0.32 -0.4
303,731 + IAI47_20325 0.32 -1.4
303,731 + IAI47_20325 0.32 -0.8
303,732 - IAI47_20325 0.32 +0.5
303,732 - IAI47_20325 0.32 -3.3
303,732 - IAI47_20325 0.32 -3.1
303,732 - IAI47_20325 0.32 +0.1
303,732 - IAI47_20325 0.32 -0.4
303,732 - IAI47_20325 0.32 -0.5
303,741 + IAI47_20325 0.33 -1.4
303,741 + IAI47_20325 0.33 -1.1
303,757 + IAI47_20325 0.35 +0.4
303,758 - IAI47_20325 0.35 +0.6
303,786 + IAI47_20325 0.39 +0.6
303,810 + IAI47_20325 0.42 -0.0
303,810 + IAI47_20325 0.42 +1.2
303,810 + IAI47_20325 0.42 +0.9
303,811 - IAI47_20325 0.43 +0.8
303,839 + IAI47_20325 0.46 -0.1
303,840 - IAI47_20325 0.47 +2.2
303,868 + IAI47_20325 0.50 -0.6
303,952 + IAI47_20325 0.62 -0.1
303,952 + IAI47_20325 0.62 -1.3
303,953 - IAI47_20325 0.62 +0.6
303,953 - IAI47_20325 0.62 -0.9
303,953 - IAI47_20325 0.62 -2.1
304,028 + IAI47_20325 0.72 -0.8
304,028 + IAI47_20325 0.72 +3.0
304,028 + IAI47_20325 0.72 +0.6
304,028 + IAI47_20325 0.72 +0.8
304,028 + IAI47_20325 0.72 +1.0
304,028 + IAI47_20325 0.72 -0.2
304,028 + IAI47_20325 0.72 +2.4
304,029 - IAI47_20325 0.73 +1.8
304,029 - IAI47_20325 0.73 -0.3
304,035 + IAI47_20325 0.73 +0.4
304,036 - IAI47_20325 0.74 -1.8
304,047 + IAI47_20325 0.75 +0.6
304,048 - IAI47_20325 0.75 -0.6
304,048 - IAI47_20325 0.75 +0.6
304,048 - IAI47_20325 0.75 -0.7
304,048 - IAI47_20325 0.75 +0.4
304,048 - IAI47_20325 0.75 +0.6
304,048 - IAI47_20325 0.75 -0.8
304,098 + IAI47_20325 0.82 -0.5
304,098 + IAI47_20325 0.82 +0.3
304,098 + IAI47_20325 0.82 +0.1
304,142 + IAI47_20325 0.88 -0.8
304,142 + IAI47_20325 0.88 -1.1
304,143 - IAI47_20325 0.88 -0.4
304,227 + -0.6
304,227 + -0.7
304,228 - -0.5
304,228 - -0.3
304,285 - -0.5
304,285 - +0.3
304,285 - -0.9
304,426 + -0.0
304,426 + -0.3
304,426 + +0.1
304,427 - +0.4
304,427 - -0.4
304,427 - -0.7
304,643 - IAI47_20330 0.26 +0.5
304,708 + IAI47_20330 0.32 +1.5
304,737 + IAI47_20330 0.35 +1.6
304,738 - IAI47_20330 0.35 +1.5
304,785 + IAI47_20330 0.40 -0.1
304,809 + IAI47_20330 0.43 -1.2
304,810 - IAI47_20330 0.43 +0.9
304,810 - IAI47_20330 0.43 +1.2
304,815 + IAI47_20330 0.43 -0.8
304,816 - IAI47_20330 0.43 -0.8
304,869 + IAI47_20330 0.49 -1.3
304,869 + IAI47_20330 0.49 +0.9
304,869 + IAI47_20330 0.49 +0.4
304,870 - IAI47_20330 0.49 -1.4
304,930 + IAI47_20330 0.55 -1.5
304,930 + IAI47_20330 0.55 +2.9
304,971 - IAI47_20330 0.59 +0.8
305,089 + IAI47_20330 0.71 +1.5
305,089 + IAI47_20330 0.71 -0.4
305,089 + IAI47_20330 0.71 +0.6
305,089 + IAI47_20330 0.71 +2.4
305,090 - IAI47_20330 0.71 +0.9
305,090 - IAI47_20330 0.71 +2.4
305,090 - IAI47_20330 0.71 +0.4
305,135 - IAI47_20330 0.76 +0.5
305,135 - IAI47_20330 0.76 -2.0
305,170 + IAI47_20330 0.79 +1.0
305,171 - IAI47_20330 0.80 +2.6
305,209 + IAI47_20330 0.83 +0.0
305,242 - IAI47_20330 0.87 -0.7
305,242 - IAI47_20330 0.87 +3.9
305,242 - IAI47_20330 0.87 -1.8
305,242 - IAI47_20330 0.87 -0.4
305,305 + +0.3
305,306 - +0.4
305,306 - -2.6
305,364 - +1.0
305,364 - -0.6
305,365 + +3.4
305,365 + -1.3
305,365 + -0.4
305,365 + +1.4
305,365 + +1.6
305,366 - +0.1
305,366 - +0.3
305,366 - -1.2
305,366 - -0.4
305,366 - +0.6
305,371 + +1.1
305,371 + +1.2
305,372 - +0.4
305,372 - -0.6
305,372 - +1.3
305,372 - -0.6
305,372 - +2.0
305,410 + -1.9
305,410 + -0.4
305,410 + -0.9
305,410 + -0.6
305,410 + -0.4
305,410 + +0.4
305,410 + +1.0
305,410 + -2.0
305,411 - +1.6
305,411 - +1.0
305,411 - +0.7
305,411 - -0.0
305,411 - +0.4
305,411 - +0.5
305,411 - -1.4
305,411 - +0.0
305,411 - -0.3
305,473 + -2.3
305,474 - +2.8
305,474 - -0.2
305,474 - -0.1
305,535 + -1.0
305,535 + +0.9
305,536 - -0.8
305,608 + IAI47_20335 0.16 +0.1
305,609 - IAI47_20335 0.16 -0.9
305,625 - IAI47_20335 0.17 -0.4
305,626 - IAI47_20335 0.18 -2.5
305,630 + IAI47_20335 0.18 -0.7
305,630 + IAI47_20335 0.18 +0.1
305,631 - IAI47_20335 0.18 -0.3
305,631 - IAI47_20335 0.18 -0.1
305,631 - IAI47_20335 0.18 -1.1
305,652 + IAI47_20335 0.20 +0.6
305,653 - IAI47_20335 0.20 +0.4
305,720 + IAI47_20335 0.26 +1.3
305,757 - IAI47_20335 0.30 +1.5
305,757 - IAI47_20335 0.30 +0.3
305,798 + IAI47_20335 0.34 +1.2
305,798 + IAI47_20335 0.34 -2.3
305,799 - IAI47_20335 0.34 -0.3
305,799 - IAI47_20335 0.34 +0.3
305,819 + IAI47_20335 0.36 +0.1
305,819 + IAI47_20335 0.36 -2.1
305,819 + IAI47_20335 0.36 -0.8
305,819 + IAI47_20335 0.36 -1.0
305,819 + IAI47_20335 0.36 +4.6
305,862 + IAI47_20335 0.40 -0.9
305,862 + IAI47_20335 0.40 -0.6
305,883 + IAI47_20335 0.42 -0.3
305,948 + IAI47_20335 0.48 +2.2
305,948 + IAI47_20335 0.48 -2.2
306,060 - IAI47_20335 0.58 +1.1
306,187 + IAI47_20335 0.70 -1.2
306,187 + IAI47_20335 0.70 -0.1
306,187 + IAI47_20335 0.70 -0.8
306,188 - IAI47_20335 0.70 +1.0
306,188 - IAI47_20335 0.70 -1.2
306,208 - IAI47_20335 0.72 +0.1
306,224 + IAI47_20335 0.74 -0.8
306,241 + IAI47_20335 0.75 +1.0
306,265 - IAI47_20335 0.78 +0.7
306,323 + IAI47_20335 0.83 -0.4
306,323 + IAI47_20335 0.83 -0.7
306,323 + IAI47_20335 0.83 -0.2
306,323 + IAI47_20335 0.83 -0.2
306,324 - IAI47_20335 0.83 -0.4
306,324 - IAI47_20335 0.83 -0.3
306,324 - IAI47_20335 0.83 +0.1
306,324 - IAI47_20335 0.83 -0.9
306,324 - IAI47_20335 0.83 -0.8
306,349 - IAI47_20335 0.86 +0.1
306,360 + IAI47_20335 0.87 +1.4

Or see this region's nucleotide sequence