Strain Fitness in Pantoea sp. MT58 around IAI47_16750

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,543,951	+				-0.3
3,543,952	-				+0.5
3,543,952	-				-0.4
3,543,952	-				-0.1
3,543,960	+				+0.9
3,543,970	-				-0.7
3,543,982	+				+0.8
3,543,982	+				+0.1
3,543,983	-				-1.3
3,543,991	+				-0.9
3,543,991	+				-0.1
3,543,991	+				-0.6
3,543,992	-				-0.8
3,543,992	-				+2.8
3,543,992	-				-0.1
3,543,992	-				+1.7
3,544,015	+				-1.5
3,544,015	+				+0.6
3,544,017	+				+0.9
3,544,017	+				+0.2
3,544,017	+				+0.2
3,544,017	+				+1.1
3,544,017	+				-0.8
3,544,017	+				+0.5
3,544,018	-				-0.4
3,544,018	-				+0.5
3,544,018	-				-0.4
3,544,018	-				-0.1
3,544,034	+				-0.3
3,544,034	+				+1.5
3,544,055	+				+0.2
3,544,055	+				+0.2
3,544,055	+				+0.3
3,544,056	-				-0.6
3,544,056	-				+0.0
3,544,056	-				-1.1
3,544,056	-				+0.8
3,544,065	+				+0.4
3,544,065	+				+0.3
3,544,065	+				+0.8
3,544,065	+				-1.4
3,544,065	+				-0.8
3,544,065	+				-0.6
3,544,066	-				+1.9
3,544,066	-				-1.2
3,544,077	-				+0.5
3,544,077	-				+1.8
3,544,079	+				+0.5
3,544,079	+				+0.8
3,544,079	+				-2.2
3,544,079	+				+0.9
3,544,080	-				-1.3
3,544,080	-				-2.2
3,544,080	-				+0.6
3,544,080	-				-0.8
3,544,080	-				+0.4
3,544,080	-				+0.8
3,544,080	-				+2.5
3,544,080	-				+1.9
3,544,080	-				+1.1
3,544,082	+				+0.9
3,544,082	+				+1.1
3,544,082	+				+0.4
3,544,083	-				+0.7
3,544,083	-				-0.5
3,544,083	-				+0.3
3,544,122	-				-0.8
3,544,192	+		IAI47_16745	0.15	+1.9
3,544,192	+		IAI47_16745	0.15	-0.5
3,544,192	+		IAI47_16745	0.15	-1.2
3,544,192	+		IAI47_16745	0.15	+0.4
3,544,193	-		IAI47_16745	0.16	-1.4
3,544,193	-		IAI47_16745	0.16	+1.4
3,544,193	-		IAI47_16745	0.16	+0.2
3,544,193	-		IAI47_16745	0.16	+0.3
3,544,193	-		IAI47_16745	0.16	+1.2
3,544,193	-		IAI47_16745	0.16	-0.1
3,544,195	+				-0.8
3,544,222	+		IAI47_16745	0.19	+0.1
3,544,222	+		IAI47_16745	0.19	+0.2
3,544,222	+		IAI47_16745	0.19	+0.4
3,544,222	+		IAI47_16745	0.19	+0.8
3,544,223	-		IAI47_16745	0.19	+0.9
3,544,223	-		IAI47_16745	0.19	+0.2
3,544,223	-		IAI47_16745	0.19	-0.3
3,544,223	-		IAI47_16745	0.19	-0.1
3,544,294	+		IAI47_16745	0.27	-1.6
3,544,294	+		IAI47_16745	0.27	-2.3
3,544,295	-		IAI47_16745	0.27	-0.8
3,544,295	-		IAI47_16745	0.27	+0.9
3,544,337	+		IAI47_16745	0.32	-1.6
3,544,337	+		IAI47_16745	0.32	-2.3
3,544,337	+		IAI47_16745	0.32	+0.4
3,544,338	-		IAI47_16745	0.32	+0.2
3,544,370	+		IAI47_16745	0.36	-0.7
3,544,370	+		IAI47_16745	0.36	-1.2
3,544,370	+		IAI47_16745	0.36	+1.1
3,544,370	+		IAI47_16745	0.36	-1.2
3,544,371	-		IAI47_16745	0.36	-2.7
3,544,371	-		IAI47_16745	0.36	+0.3
3,544,371	-		IAI47_16745	0.36	-1.2
3,544,374	-		IAI47_16745	0.36	-0.1
3,544,374	-		IAI47_16745	0.36	+0.3
3,544,374	-		IAI47_16745	0.36	-0.8
3,544,374	-		IAI47_16745	0.36	-0.9
3,544,379	+		IAI47_16745	0.37	-0.1
3,544,380	-		IAI47_16745	0.37	-0.3
3,544,404	-		IAI47_16745	0.39	+0.4
3,544,409	+		IAI47_16745	0.40	+1.3
3,544,409	+		IAI47_16745	0.40	-0.8
3,544,410	-		IAI47_16745	0.40	+1.3
3,544,509	-		IAI47_16745	0.51	-0.7
3,544,527	-		IAI47_16745	0.53	-1.9
3,544,621	+		IAI47_16745	0.64	-1.1
3,544,621	+		IAI47_16745	0.64	+0.1
3,544,621	+		IAI47_16745	0.64	-1.2
3,544,622	-		IAI47_16745	0.64	-0.5
3,544,636	+		IAI47_16745	0.66	+0.9
3,544,636	+		IAI47_16745	0.66	+1.1
3,544,637	-		IAI47_16745	0.66	-0.4
3,544,637	-		IAI47_16745	0.66	+1.6
3,544,652	+		IAI47_16745	0.68	+0.1
3,544,652	+		IAI47_16745	0.68	-0.6
3,544,652	+		IAI47_16745	0.68	-0.4
3,544,652	+		IAI47_16745	0.68	+0.9
3,544,700	-		IAI47_16745	0.73	+1.8
3,544,729	+		IAI47_16745	0.76	-0.9
3,544,729	+		IAI47_16745	0.76	+1.3
3,544,730	-		IAI47_16745	0.76	-1.1
3,544,730	-		IAI47_16745	0.76	-1.7
3,544,733	+		IAI47_16745	0.77	-0.4
3,544,733	+		IAI47_16745	0.77	+0.3
3,544,733	+		IAI47_16745	0.77	+1.3
3,544,733	+		IAI47_16745	0.77	+0.4
3,544,733	+		IAI47_16745	0.77	+1.5
3,544,734	-		IAI47_16745	0.77	+1.4
3,544,734	-		IAI47_16745	0.77	+0.2
3,544,734	-		IAI47_16745	0.77	+0.3
3,544,734	-		IAI47_16745	0.77	+0.6
3,544,810	+		IAI47_16745	0.85	-2.2
3,544,810	+		IAI47_16745	0.85	+0.0
3,544,810	+		IAI47_16745	0.85	+2.2
3,544,811	-		IAI47_16745	0.86	-1.8
3,544,811	-		IAI47_16745	0.86	-1.4
3,544,932	-				+1.7
3,544,935	+				+1.8
3,544,935	+				+0.1
3,544,935	+				+0.5
3,544,936	-				+0.0
3,544,936	-				+2.3
3,544,950	-				+0.9
3,544,950	-				+0.9
3,544,962	+				+0.1
3,544,963	-				+0.2
3,545,022	+				+0.3
3,545,023	-				-0.9
3,545,023	-				+1.3
3,545,023	-				-0.0
3,545,042	-		IAI47_16750	0.12	-0.5
3,545,093	+		IAI47_16750	0.17	+1.2
3,545,093	+		IAI47_16750	0.17	-0.1
3,545,219	+		IAI47_16750	0.30	-1.2
3,545,219	+		IAI47_16750	0.30	-0.6
3,545,219	+		IAI47_16750	0.30	-0.1
3,545,219	+		IAI47_16750	0.30	+2.2
3,545,219	+		IAI47_16750	0.30	+1.4
3,545,219	+		IAI47_16750	0.30	-0.1
3,545,220	-		IAI47_16750	0.30	-0.2
3,545,220	-		IAI47_16750	0.30	+1.3
3,545,220	-		IAI47_16750	0.30	+0.4
3,545,242	-		IAI47_16750	0.33	+0.6
3,545,248	-		IAI47_16750	0.33	-1.8
3,545,278	-		IAI47_16750	0.37	+0.8
3,545,278	-		IAI47_16750	0.37	+0.3
3,545,371	+		IAI47_16750	0.46	+1.1
3,545,371	+		IAI47_16750	0.46	-1.9
3,545,372	-		IAI47_16750	0.46	+0.2
3,545,372	-		IAI47_16750	0.46	+0.6
3,545,421	+		IAI47_16750	0.52	-1.1
3,545,421	+		IAI47_16750	0.52	-1.8
3,545,421	+		IAI47_16750	0.52	-1.1
3,545,422	-		IAI47_16750	0.52	-1.2
3,545,422	-		IAI47_16750	0.52	-1.4
3,545,435	+		IAI47_16750	0.53	-0.8
3,545,436	-		IAI47_16750	0.53	+0.0
3,545,448	-		IAI47_16750	0.54	-0.8
3,545,452	-		IAI47_16750	0.55	-2.0
3,545,515	+		IAI47_16750	0.62	+1.7
3,545,515	+		IAI47_16750	0.62	-1.6
3,545,516	-		IAI47_16750	0.62	-0.0
3,545,547	+		IAI47_16750	0.65	-0.1
3,545,548	-		IAI47_16750	0.65	+1.8
3,545,548	-		IAI47_16750	0.65	-2.0
3,545,567	-		IAI47_16750	0.67	-0.3
3,545,567	-		IAI47_16750	0.67	+1.2
3,545,567	-		IAI47_16750	0.67	+0.5
3,545,567	-		IAI47_16750	0.67	-0.4
3,545,567	-		IAI47_16750	0.67	+1.6
3,545,567	-		IAI47_16750	0.67	+1.4
3,545,567	-		IAI47_16750	0.67	+1.3
3,545,567	-		IAI47_16750	0.67	+0.3
3,545,577	+		IAI47_16750	0.68	-1.2
3,545,578	-		IAI47_16750	0.68	+1.5
3,545,578	-		IAI47_16750	0.68	+0.4
3,545,578	-		IAI47_16750	0.68	+0.3
3,545,607	+		IAI47_16750	0.71	-2.3
3,545,608	-		IAI47_16750	0.71	-0.4
3,545,608	-		IAI47_16750	0.71	-1.5
3,545,608	-		IAI47_16750	0.71	-1.6
3,545,608	-		IAI47_16750	0.71	-0.3
3,545,608	-		IAI47_16750	0.71	-0.6
3,545,631	+		IAI47_16750	0.74	-0.1
3,545,632	-		IAI47_16750	0.74	+0.1
3,545,667	+		IAI47_16750	0.77	+0.7
3,545,668	-		IAI47_16750	0.78	+0.2
3,545,742	+		IAI47_16750	0.85	-0.6
3,545,763	+		IAI47_16750	0.88	-0.1
3,545,763	+		IAI47_16750	0.88	+0.8
3,545,764	-		IAI47_16750	0.88	+0.4
3,545,780	+		IAI47_16750	0.89	-0.8
3,545,780	+		IAI47_16750	0.89	-0.6
3,545,780	+		IAI47_16750	0.89	-2.0
3,545,780	+		IAI47_16750	0.89	-0.9
3,545,781	-		IAI47_16750	0.89	-2.1
3,545,781	-		IAI47_16750	0.89	+0.3
3,545,781	-		IAI47_16750	0.89	-0.3
3,545,781	-		IAI47_16750	0.89	-0.5
3,545,781	-		IAI47_16750	0.89	-1.5
3,545,810	-				+0.3
3,545,810	-				-1.4
3,545,828	-				+1.4
3,545,828	-				-1.2
3,545,869	-				+0.8
3,545,869	-				+0.2
3,545,869	-				-0.2
3,545,883	+				-1.9
3,545,883	+				-0.1
3,545,909	+				+2.5
3,545,909	+				+0.5
3,545,909	+				-0.8
3,545,909	+				-0.4
3,545,910	-				+1.1
3,545,910	-				+0.4
3,545,910	-				+0.5
3,545,910	-				+0.8
3,545,945	+				+0.7
3,545,945	+				+1.5
3,545,945	+				+0.6
3,545,945	+				-2.1
3,545,946	-				-1.9
3,545,946	-				+1.3
3,545,946	-				-0.1
3,545,962	+				-0.5
3,545,962	+				-0.8
3,545,962	+				+1.6
3,545,963	-				-2.5
3,545,963	-				-2.5
3,545,998	-				-2.3
3,546,023	+				+0.1
3,546,024	-				-1.3
3,546,034	+				-1.8
3,546,034	+				+1.5
3,546,034	+				-0.3
3,546,034	+				-2.3
3,546,034	+				-1.9
3,546,035	-				-0.5
3,546,035	-				+0.9
3,546,035	-				+1.0
3,546,035	-				+0.8
3,546,046	+				+1.8
3,546,047	-				+0.2
3,546,082	-				-2.9
3,546,092	+				+0.5
3,546,092	+				-2.0
3,546,092	+				-1.6
3,546,092	+				-0.5
3,546,092	+				-0.7
3,546,093	-				-0.0
3,546,093	-				+0.3
3,546,127	+				+0.6
3,546,159	+				-0.1
3,546,159	+				+1.9
3,546,160	-				-0.3
3,546,181	+				-0.4
3,546,182	-				-0.8
3,546,216	+				+0.2
3,546,216	+				-0.8
3,546,216	+				-1.8
3,546,216	+				-1.4
3,546,216	+				-1.1
3,546,216	+				+0.1
3,546,216	+				+1.6
3,546,216	+				-0.2
3,546,216	+				+1.5
3,546,217	-				+0.9
3,546,217	-				-0.1
3,546,217	-				+0.2
3,546,217	-				-1.2
3,546,217	-				+0.0
3,546,217	-				+1.3
3,546,217	-				+0.5
3,546,217	-				+3.0
3,546,217	-				+1.1
3,546,223	-				-2.3
3,546,290	-				+0.7
3,546,291	+				-0.9
3,546,291	+				-2.1
3,546,291	+				+0.9
3,546,291	+				-2.1
3,546,291	+				+1.5
3,546,291	+				+0.6
3,546,292	-				+1.0
3,546,292	-				+1.9
3,546,292	-				+2.0
3,546,306	+				+0.4
3,546,307	-				+1.1
3,546,372	+		IAI47_16755	0.16	+1.2
3,546,373	-		IAI47_16755	0.16	+0.6
3,546,373	-		IAI47_16755	0.16	-0.2
3,546,426	-		IAI47_16755	0.22	+1.4
3,546,432	+		IAI47_16755	0.22	+2.9
3,546,435	+		IAI47_16755	0.22	+0.4
3,546,435	+		IAI47_16755	0.22	-0.2
3,546,435	+		IAI47_16755	0.22	+0.9
3,546,435	+		IAI47_16755	0.22	-1.1
3,546,435	+		IAI47_16755	0.22	+0.6
3,546,435	+		IAI47_16755	0.22	-0.3
3,546,435	+		IAI47_16755	0.22	+0.1
3,546,435	+		IAI47_16755	0.22	-0.7
3,546,436	-		IAI47_16755	0.23	-1.1
3,546,436	-		IAI47_16755	0.23	-0.1
3,546,436	-		IAI47_16755	0.23	+0.6
3,546,436	-		IAI47_16755	0.23	-1.4
3,546,436	-		IAI47_16755	0.23	-0.1
3,546,496	+		IAI47_16755	0.28	+0.9
3,546,497	-		IAI47_16755	0.29	+0.2
3,546,516	+		IAI47_16755	0.30	-0.9
3,546,565	-		IAI47_16755	0.35	+1.4
3,546,591	+		IAI47_16755	0.38	+1.2
3,546,624	+		IAI47_16755	0.41	-0.2
3,546,669	+		IAI47_16755	0.45	+0.1
3,546,690	+		IAI47_16755	0.47	+0.0
3,546,690	+		IAI47_16755	0.47	-0.1
3,546,691	-		IAI47_16755	0.48	+1.0
3,546,691	-		IAI47_16755	0.48	+0.3
3,546,691	-		IAI47_16755	0.48	-0.9
3,546,729	+		IAI47_16755	0.51	-0.2
3,546,812	-		IAI47_16755	0.59	-0.2
3,546,874	+		IAI47_16755	0.65	-0.3
3,546,874	+		IAI47_16755	0.65	-0.2
3,546,874	+		IAI47_16755	0.65	+2.1
3,546,874	+		IAI47_16755	0.65	-0.7
3,546,875	-		IAI47_16755	0.65	-1.8
3,546,875	-		IAI47_16755	0.65	+0.8
3,546,875	-		IAI47_16755	0.65	-0.3
3,546,875	-		IAI47_16755	0.65	+0.4
3,546,875	-		IAI47_16755	0.65	+2.2
3,546,875	-		IAI47_16755	0.65	+0.8
3,546,875	-		IAI47_16755	0.65	+1.0