Strain Fitness in Pantoea sp. MT58 around IAI47_15785

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,328,796	+		IAI47_15780	0.28	-0.1
3,328,796	+		IAI47_15780	0.28	+0.8
3,328,796	+		IAI47_15780	0.28	+0.7
3,328,796	+		IAI47_15780	0.28	+1.0
3,328,797	-		IAI47_15780	0.28	-1.0
3,328,804	+		IAI47_15780	0.29	+1.4
3,328,804	+		IAI47_15780	0.29	+0.1
3,328,805	-		IAI47_15780	0.29	+0.4
3,328,805	-		IAI47_15780	0.29	-0.2
3,328,805	-		IAI47_15780	0.29	-0.2
3,328,805	-		IAI47_15780	0.29	+0.2
3,328,805	-		IAI47_15780	0.29	+0.4
3,328,913	+		IAI47_15780	0.41	-1.6
3,328,913	+		IAI47_15780	0.41	+0.8
3,328,914	-		IAI47_15780	0.41	-0.8
3,328,914	-		IAI47_15780	0.41	-0.1
3,329,004	-		IAI47_15780	0.51	-0.5
3,329,071	+		IAI47_15780	0.58	-0.8
3,329,072	-		IAI47_15780	0.58	+0.1
3,329,072	-		IAI47_15780	0.58	-0.6
3,329,072	-		IAI47_15780	0.58	-1.5
3,329,072	-		IAI47_15780	0.58	-0.4
3,329,072	-		IAI47_15780	0.58	+2.0
3,329,094	-		IAI47_15780	0.61	+1.1
3,329,126	+		IAI47_15780	0.64	+0.4
3,329,126	+		IAI47_15780	0.64	-0.2
3,329,126	+		IAI47_15780	0.64	+1.9
3,329,126	+		IAI47_15780	0.64	+0.0
3,329,126	+		IAI47_15780	0.64	-0.4
3,329,127	-		IAI47_15780	0.65	+0.3
3,329,127	-		IAI47_15780	0.65	-0.0
3,329,127	-		IAI47_15780	0.65	-1.9
3,329,127	-		IAI47_15780	0.65	+2.0
3,329,127	-		IAI47_15780	0.65	-1.2
3,329,127	-		IAI47_15780	0.65	+1.2
3,329,127	-		IAI47_15780	0.65	+1.8
3,329,131	+		IAI47_15780	0.65	-0.5
3,329,131	+		IAI47_15780	0.65	-0.8
3,329,131	+		IAI47_15780	0.65	+0.3
3,329,131	+		IAI47_15780	0.65	+0.4
3,329,132	-		IAI47_15780	0.65	-0.4
3,329,195	+		IAI47_15780	0.72	-0.8
3,329,195	+		IAI47_15780	0.72	+0.9
3,329,195	+		IAI47_15780	0.72	+0.5
3,329,195	+		IAI47_15780	0.72	+1.8
3,329,196	-		IAI47_15780	0.72	+2.8
3,329,196	-		IAI47_15780	0.72	-1.4
3,329,196	-		IAI47_15780	0.72	+0.1
3,329,196	-		IAI47_15780	0.72	+1.2
3,329,196	-		IAI47_15780	0.72	+1.0
3,329,196	-		IAI47_15780	0.72	-0.6
3,329,236	+		IAI47_15780	0.77	-0.7
3,329,236	+		IAI47_15780	0.77	+0.7
3,329,236	+		IAI47_15780	0.77	-0.4
3,329,236	+		IAI47_15780	0.77	+0.4
3,329,236	+		IAI47_15780	0.77	-1.2
3,329,236	+		IAI47_15780	0.77	+1.0
3,329,236	+		IAI47_15780	0.77	-1.6
3,329,236	+		IAI47_15780	0.77	-0.5
3,329,236	+		IAI47_15780	0.77	+0.6
3,329,236	+		IAI47_15780	0.77	-0.6
3,329,237	-		IAI47_15780	0.77	+0.1
3,329,237	-		IAI47_15780	0.77	-0.5
3,329,237	-		IAI47_15780	0.77	-1.4
3,329,237	-		IAI47_15780	0.77	-1.2
3,329,237	-		IAI47_15780	0.77	+1.0
3,329,237	-		IAI47_15780	0.77	-1.1
3,329,237	-		IAI47_15780	0.77	-0.7
3,329,237	-		IAI47_15780	0.77	-1.0
3,329,237	-		IAI47_15780	0.77	+1.1
3,329,242	-		IAI47_15780	0.77	+0.6
3,329,309	-		IAI47_15780	0.85	-0.0
3,329,309	-		IAI47_15780	0.85	-1.7
3,329,348	+		IAI47_15780	0.89	+0.3
3,329,348	+		IAI47_15780	0.89	-1.6
3,329,348	+		IAI47_15780	0.89	-0.8
3,329,348	+		IAI47_15780	0.89	+0.2
3,329,348	+		IAI47_15780	0.89	+0.6
3,329,348	+		IAI47_15780	0.89	+0.3
3,329,348	+		IAI47_15780	0.89	-0.3
3,329,348	+		IAI47_15780	0.89	-0.3
3,329,348	+		IAI47_15780	0.89	+1.8
3,329,349	-		IAI47_15780	0.89	+0.0
3,329,349	-		IAI47_15780	0.89	+0.2
3,329,349	-		IAI47_15780	0.89	+0.3
3,329,349	-		IAI47_15780	0.89	+3.1
3,329,349	-		IAI47_15780	0.89	-0.4
3,329,349	-		IAI47_15780	0.89	+0.6
3,329,349	-		IAI47_15780	0.89	+0.2
3,329,349	-		IAI47_15780	0.89	+0.8
3,329,350	+		IAI47_15780	0.89	+0.1
3,329,350	+		IAI47_15780	0.89	-0.8
3,329,350	+		IAI47_15780	0.89	-0.4
3,329,350	+		IAI47_15780	0.89	-1.3
3,329,350	+		IAI47_15780	0.89	+1.1
3,329,351	-		IAI47_15780	0.89	+1.9
3,329,351	-		IAI47_15780	0.89	+0.6
3,329,351	-		IAI47_15780	0.89	+0.3
3,329,351	-		IAI47_15780	0.89	+0.6
3,329,351	-		IAI47_15780	0.89	+0.4
3,329,351	-		IAI47_15780	0.89	-2.5
3,329,405	+				+0.4
3,329,405	+				-1.6
3,329,405	+				-0.7
3,329,406	-				+0.2
3,329,434	+				+0.8
3,329,434	+				+1.0
3,329,434	+				+0.6
3,329,434	+				+1.2
3,329,435	-				+0.4
3,329,435	-				-0.4
3,329,435	-				+1.8
3,329,435	-				-0.9
3,329,508	+				+1.0
3,329,508	+				-0.2
3,329,508	+				-1.4
3,329,509	-				+0.3
3,329,520	+				-1.1
3,329,520	+				-1.5
3,329,521	-				-1.4
3,329,521	-				+1.8
3,329,579	+				-0.1
3,329,579	+				-0.1
3,329,579	+				+1.2
3,329,579	+				+0.6
3,329,579	+				+0.1
3,329,579	+				-1.3
3,329,579	+				+0.3
3,329,580	-				+1.4
3,329,580	-				+3.0
3,329,580	-				+0.1
3,329,581	+				+0.4
3,329,581	+				-1.9
3,329,581	+				-2.7
3,329,581	+				-0.7
3,329,581	+				-0.6
3,329,581	+				+0.1
3,329,581	+				+1.7
3,329,581	+				+0.1
3,329,581	+				+0.1
3,329,581	+				+1.7
3,329,581	+				-2.2
3,329,581	+				+0.0
3,329,581	+				-0.5
3,329,581	+				+0.3
3,329,581	+				-0.7
3,329,581	+				+0.3
3,329,581	+				-0.6
3,329,582	-				-0.5
3,329,582	-				-0.6
3,329,582	-				+0.6
3,329,582	-				-1.0
3,329,582	-				-0.7
3,329,582	-				+1.5
3,329,582	-				+2.3
3,329,582	-				+0.2
3,329,582	-				-1.5
3,329,582	-				+0.9
3,329,582	-				-1.7
3,329,582	-				-0.8
3,329,582	-				+1.9
3,329,582	-				-1.4
3,329,582	-				-1.3
3,329,582	-				+1.4
3,329,582	-				-0.2
3,329,583	+				+0.4
3,329,583	+				+0.6
3,329,583	+				-1.0
3,329,583	+				+0.1
3,329,583	+				+0.1
3,329,583	+				-0.6
3,329,583	+				+0.2
3,329,583	+				+0.2
3,329,583	+				+0.1
3,329,583	+				-1.2
3,329,583	+				-2.1
3,329,583	+				+2.4
3,329,583	+				+0.9
3,329,583	+				-0.4
3,329,583	+				-2.2
3,329,583	+				-0.7
3,329,583	+				+1.9
3,329,584	-				+0.3
3,329,584	-				+0.9
3,329,584	-				-0.2
3,329,584	-				+0.9
3,329,584	-				+0.7
3,329,584	-				+0.5
3,329,584	-				-0.5
3,329,584	-				+3.3
3,329,584	-				+0.4
3,329,584	-				+2.3
3,329,584	-				+0.6
3,329,584	-				+0.4
3,329,584	-				-2.6
3,329,584	-				-1.8
3,329,584	-				+0.2
3,329,618	-				-1.9
3,329,618	-				-0.2
3,329,630	+				-0.4
3,329,631	-				-1.9
3,329,631	-				-1.2
3,329,634	+				+0.8
3,329,634	+				-0.6
3,329,634	+				-1.1
3,329,635	-				+0.7
3,329,635	-				-1.6
3,329,635	-				+0.5
3,329,636	+				-0.0
3,329,637	-				+1.1
3,329,637	-				+1.0
3,329,637	-				+0.3
3,329,637	-				-1.7
3,329,637	-				-1.1
3,329,637	-				-0.0
3,329,641	+				+0.2
3,329,641	+				+0.4
3,329,642	-				-0.1
3,329,643	+				+1.0
3,329,643	+				-0.3
3,329,643	+				-0.4
3,329,643	+				+0.3
3,329,644	-				-0.1
3,329,644	-				+0.8
3,329,644	-				-1.6
3,329,647	-				-0.5
3,329,647	-				+0.1
3,329,647	-				+0.8
3,329,647	-				+0.8
3,329,647	-				+1.2
3,329,647	-				+1.1
3,329,647	-				+0.6
3,329,651	+				-0.9
3,329,651	+				+0.5
3,329,651	+				-0.5
3,329,652	-				-1.0
3,329,652	-				+2.3
3,329,652	-				+0.9
3,329,654	-				-0.9
3,329,658	+				+1.2
3,329,658	+				-2.1
3,329,658	+				+0.3
3,329,659	-				-0.7
3,329,659	-				-1.5
3,329,659	-				-0.7
3,329,659	-				-1.1
3,329,661	+				-1.4
3,329,662	-				-0.1
3,329,663	+				+0.1
3,329,663	+				+0.5
3,329,717	+				-0.2
3,329,718	-				-0.6
3,329,727	+				-0.1
3,329,727	+				-0.8
3,329,728	-				-1.0
3,329,728	-				-0.5
3,329,728	-				-0.2
3,329,728	-				-1.1
3,329,733	+				+0.7
3,329,733	+				-1.7
3,329,734	-				+2.1
3,329,734	-				-0.2
3,329,734	-				-0.3
3,329,734	-				-0.3
3,329,734	-				+1.2
3,329,734	-				-0.4
3,329,737	+				-0.6
3,329,737	+				-2.4
3,329,737	+				+0.1
3,329,737	+				-0.6
3,329,737	+				-0.9
3,329,737	+				-1.2
3,329,737	+				-0.8
3,329,737	+				+1.3
3,329,737	+				-0.6
3,329,737	+				+1.4
3,329,737	+				-1.3
3,329,737	+				-1.6
3,329,738	-				-1.0
3,329,738	-				-0.7
3,329,738	-				-0.2
3,329,738	-				+0.8
3,329,738	-				-0.0
3,329,738	-				+0.6
3,329,758	+				-0.6
3,329,758	+				+0.5
3,329,794	-		IAI47_15785	0.13	-2.7
3,329,808	+		IAI47_15785	0.16	-0.2
3,329,809	-		IAI47_15785	0.16	-0.4
3,329,809	-		IAI47_15785	0.16	-0.7
3,329,822	+		IAI47_15785	0.18	-1.2
3,329,822	+		IAI47_15785	0.18	-0.2
3,329,822	+		IAI47_15785	0.18	+0.5
3,329,822	+		IAI47_15785	0.18	-0.4
3,329,823	-		IAI47_15785	0.19	-1.7
3,329,823	-		IAI47_15785	0.19	-0.5
3,329,823	-		IAI47_15785	0.19	-0.2
3,329,823	-		IAI47_15785	0.19	-0.2
3,329,826	+		IAI47_15785	0.19	+0.8
3,329,826	+		IAI47_15785	0.19	+0.8
3,329,826	+		IAI47_15785	0.19	-0.1
3,329,826	+		IAI47_15785	0.19	+1.2
3,329,826	+		IAI47_15785	0.19	+1.3
3,329,826	+		IAI47_15785	0.19	+0.4
3,329,827	-		IAI47_15785	0.19	-0.5
3,329,827	-		IAI47_15785	0.19	+2.3
3,329,827	-		IAI47_15785	0.19	+0.2
3,329,827	-		IAI47_15785	0.19	-1.1
3,329,827	-		IAI47_15785	0.19	+1.1
3,329,827	-		IAI47_15785	0.19	+0.3
3,329,827	-		IAI47_15785	0.19	+2.0
3,329,827	-		IAI47_15785	0.19	-0.2
3,329,835	+		IAI47_15785	0.21	+0.1
3,329,835	+		IAI47_15785	0.21	+2.4
3,329,836	-		IAI47_15785	0.21	-0.3
3,329,836	-		IAI47_15785	0.21	-1.0
3,329,848	+		IAI47_15785	0.24	-1.3
3,329,848	+		IAI47_15785	0.24	-2.0
3,329,848	+		IAI47_15785	0.24	-0.5
3,329,848	+		IAI47_15785	0.24	+1.0
3,329,848	+		IAI47_15785	0.24	+0.7
3,329,849	-		IAI47_15785	0.24	-0.7
3,329,849	-		IAI47_15785	0.24	+0.5
3,329,849	-		IAI47_15785	0.24	-1.2
3,329,849	-		IAI47_15785	0.24	+0.8
3,329,849	-		IAI47_15785	0.24	+0.5
3,329,849	-		IAI47_15785	0.24	-0.6
3,329,849	-		IAI47_15785	0.24	+0.3
3,329,866	+		IAI47_15785	0.27	+0.6
3,329,866	+		IAI47_15785	0.27	-0.8
3,329,866	+		IAI47_15785	0.27	+1.1
3,329,866	+		IAI47_15785	0.27	-0.7
3,329,866	+		IAI47_15785	0.27	+0.4
3,329,866	+		IAI47_15785	0.27	-1.3
3,329,867	-		IAI47_15785	0.27	+0.5
3,329,867	-		IAI47_15785	0.27	-0.8
3,329,867	-		IAI47_15785	0.27	+0.3
3,329,867	-		IAI47_15785	0.27	+0.1
3,329,876	+		IAI47_15785	0.29	-0.0
3,329,877	-		IAI47_15785	0.29	+0.4
3,329,877	-		IAI47_15785	0.29	-1.6
3,329,877	-		IAI47_15785	0.29	-1.1
3,329,877	-		IAI47_15785	0.29	-0.0
3,329,877	-		IAI47_15785	0.29	-0.0
3,329,980	+		IAI47_15785	0.49	-0.2
3,329,980	+		IAI47_15785	0.49	-0.7
3,329,980	+		IAI47_15785	0.49	+0.8
3,329,980	+		IAI47_15785	0.49	+1.1
3,329,981	-		IAI47_15785	0.50	-0.7
3,329,981	-		IAI47_15785	0.50	-0.6
3,329,981	-		IAI47_15785	0.50	+0.5
3,329,981	-		IAI47_15785	0.50	+1.2
3,329,998	+		IAI47_15785	0.53	-1.7
3,329,998	+		IAI47_15785	0.53	+0.7
3,329,999	-		IAI47_15785	0.53	-1.3
3,329,999	-		IAI47_15785	0.53	-1.9
3,329,999	-		IAI47_15785	0.53	+1.8
3,330,006	+		IAI47_15785	0.55	-1.5
3,330,006	+		IAI47_15785	0.55	+0.6
3,330,006	+		IAI47_15785	0.55	-1.4
3,330,006	+		IAI47_15785	0.55	-1.5
3,330,006	+		IAI47_15785	0.55	+2.5
3,330,006	+		IAI47_15785	0.55	+1.7
3,330,006	+		IAI47_15785	0.55	-0.9
3,330,006	+		IAI47_15785	0.55	-1.9
3,330,007	-		IAI47_15785	0.55	-0.2
3,330,007	-		IAI47_15785	0.55	+1.1
3,330,007	-		IAI47_15785	0.55	-0.4
3,330,007	-		IAI47_15785	0.55	+2.0
3,330,007	-		IAI47_15785	0.55	-1.7
3,330,007	-		IAI47_15785	0.55	+0.4
3,330,007	-		IAI47_15785	0.55	+0.3
3,330,008	+		IAI47_15785	0.55	-0.8
3,330,008	+		IAI47_15785	0.55	-0.1
3,330,008	+		IAI47_15785	0.55	-1.2
3,330,008	+		IAI47_15785	0.55	-2.9
3,330,009	-		IAI47_15785	0.55	-1.6
3,330,009	-		IAI47_15785	0.55	-0.3
3,330,009	-		IAI47_15785	0.55	-0.9
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3,331,176	-				+0.2
3,331,176	-				-1.2
3,331,177	+				-0.6
3,331,178	-				+1.8
3,331,178	-				-0.4
3,331,178	-				-1.0
3,331,222	+		IAI47_15795	0.16	+2.9
3,331,222	+		IAI47_15795	0.16	-1.3
3,331,223	-		IAI47_15795	0.17	-2.7
3,331,226	-		IAI47_15795	0.17	+2.7
3,331,226	-		IAI47_15795	0.17	-0.3
3,331,233	+		IAI47_15795	0.19	-0.1
3,331,234	-		IAI47_15795	0.19	+0.9