Strain Fitness in Pantoea sp. MT58 around IAI47_10435

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,212,001	+		IAI47_10425	0.72	-0.9
2,212,001	+		IAI47_10425	0.72	-1.9
2,212,015	+		IAI47_10425	0.74	+0.9
2,212,136	+		IAI47_10425	0.86	-3.1
2,212,141	+		IAI47_10425	0.87	-1.4
2,212,141	+		IAI47_10425	0.87	+0.3
2,212,141	+		IAI47_10425	0.87	+0.7
2,212,141	+		IAI47_10425	0.87	+1.3
2,212,142	-		IAI47_10425	0.87	-0.1
2,212,142	-		IAI47_10425	0.87	+1.0
2,212,199	-				-1.8
2,212,199	-				-0.3
2,212,275	-				-0.2
2,212,305	+				-0.9
2,212,319	-				-0.5
2,212,319	-				-1.0
2,212,319	-				+0.1
2,212,385	-				+1.3
2,212,425	+				+0.6
2,212,444	+				+3.7
2,212,521	-		IAI47_10430	0.21	+0.4
2,212,616	+		IAI47_10430	0.73	-0.4
2,212,633	-		IAI47_10430	0.83	-0.1
2,212,633	-		IAI47_10430	0.83	+0.1
2,212,633	-		IAI47_10430	0.83	+0.8
2,212,661	+				+0.1
2,212,661	+				+1.7
2,212,664	+				-0.9
2,212,665	-				+0.1
2,212,665	-				-0.6
2,212,668	+				-0.4
2,212,669	-				+1.9
2,212,669	-				+0.0
2,212,669	-				-0.4
2,212,673	+				+0.2
2,212,673	+				-0.0
2,212,673	+				-0.2
2,212,674	-				+0.7
2,212,674	-				-1.9
2,212,674	-				-0.9
2,212,710	-				+2.6
2,212,712	+				+0.6
2,212,713	-				-0.4
2,212,737	+				+0.4
2,212,737	+				-0.6
2,212,737	+				-0.3
2,212,737	+				+0.0
2,212,737	+				-0.1
2,212,737	+				+0.4
2,212,737	+				-1.9
2,212,737	+				-0.7
2,212,738	-				+0.2
2,212,738	-				+1.9
2,212,738	-				-1.2
2,212,738	-				-0.3
2,212,738	-				-0.2
2,212,738	-				+0.2
2,212,738	-				-2.3
2,212,773	+				+1.6
2,212,773	+				-2.8
2,212,773	+				-1.2
2,212,776	+				-0.2
2,212,776	+				+0.8
2,212,776	+				-1.7
2,212,776	+				-1.3
2,212,777	-				+0.2
2,212,781	+				-1.3
2,212,781	+				+0.5
2,212,782	-				-0.3
2,212,782	-				-0.2
2,212,794	+				+0.6
2,212,794	+				-1.8
2,212,794	+				-1.8
2,212,809	+				-0.6
2,212,843	-				+0.8
2,212,845	+				+0.4
2,212,846	-				-0.2
2,212,846	-				-0.3
2,212,846	-				-0.7
2,212,913	-				+1.7
2,212,913	-				-1.0
2,212,914	+				+1.1
2,212,915	-				+0.6
2,212,932	+				+0.6
2,212,932	+				-0.3
2,212,932	+				-0.2
2,212,933	-				+0.3
2,212,933	-				-0.8
2,212,938	+				-1.3
2,212,938	+				+2.1
2,212,938	+				-1.2
2,212,939	-				+1.4
2,212,939	-				-2.6
2,212,939	-				+1.3
2,212,942	+				+0.2
2,212,942	+				-1.5
2,212,942	+				+1.1
2,212,943	-				+0.8
2,212,943	-				-1.4
2,212,943	-				-1.0
2,212,943	-				+1.0
2,212,943	-				-1.2
2,212,943	-				+1.8
2,212,946	-				-0.7
2,212,971	-				-1.0
2,212,979	-		IAI47_10435	0.11	-1.9
2,212,993	-		IAI47_10435	0.18	-1.6
2,213,032	+		IAI47_10435	0.36	-0.4
2,213,033	-		IAI47_10435	0.36	+1.1
2,213,033	-		IAI47_10435	0.36	-0.0
2,213,036	+		IAI47_10435	0.38	-1.4
2,213,068	+		IAI47_10435	0.52	-0.3
2,213,068	+		IAI47_10435	0.52	+0.4
2,213,068	+		IAI47_10435	0.52	+1.1
2,213,068	+		IAI47_10435	0.52	-1.0
2,213,068	+		IAI47_10435	0.52	-0.8
2,213,068	+		IAI47_10435	0.52	+0.3
2,213,068	+		IAI47_10435	0.52	+0.6
2,213,068	+		IAI47_10435	0.52	-0.6
2,213,069	-		IAI47_10435	0.53	-0.7
2,213,069	-		IAI47_10435	0.53	-0.7
2,213,069	-		IAI47_10435	0.53	-1.0
2,213,069	-		IAI47_10435	0.53	-2.2
2,213,069	-		IAI47_10435	0.53	+3.6
2,213,069	-		IAI47_10435	0.53	-1.9
2,213,121	+		IAI47_10435	0.77	-0.8
2,213,121	+		IAI47_10435	0.77	-1.0
2,213,121	+		IAI47_10435	0.77	+0.7
2,213,122	-		IAI47_10435	0.77	+0.9
2,213,123	+		IAI47_10435	0.78	+0.3
2,213,123	+		IAI47_10435	0.78	+1.1
2,213,123	+		IAI47_10435	0.78	+0.3
2,213,123	+		IAI47_10435	0.78	-0.2
2,213,124	-		IAI47_10435	0.78	+1.1
2,213,124	-		IAI47_10435	0.78	-1.2
2,213,160	-				-1.3
2,213,184	+				+1.6
2,213,239	+				-0.1
2,213,239	+				+0.3
2,213,239	+				-1.7
2,213,239	+				+0.8
2,213,239	+				+1.8
2,213,240	-				-0.2
2,213,240	-				-2.0
2,213,240	-				-0.4
2,213,273	+				-0.9
2,213,273	+				-2.9
2,213,273	+				+1.0
2,213,273	+				-0.7
2,213,274	-				+0.3
2,213,274	-				-1.9
2,213,274	-				+0.3
2,213,277	+				-0.3
2,213,278	-				+0.1
2,213,278	-				-1.6
2,213,278	-				-0.9
2,213,383	+		IAI47_10440	0.23	+0.8
2,213,383	+		IAI47_10440	0.23	-0.8
2,213,383	+		IAI47_10440	0.23	+0.2
2,213,383	+		IAI47_10440	0.23	+1.0
2,213,384	-		IAI47_10440	0.23	+2.7
2,213,384	-		IAI47_10440	0.23	-0.7
2,213,384	-		IAI47_10440	0.23	-0.3
2,213,384	-		IAI47_10440	0.23	-1.7
2,213,384	-		IAI47_10440	0.23	-0.7
2,213,384	-		IAI47_10440	0.23	-0.3
2,213,384	-		IAI47_10440	0.23	-1.0
2,213,384	-		IAI47_10440	0.23	+0.6
2,213,384	-		IAI47_10440	0.23	+1.3
2,213,384	-		IAI47_10440	0.23	-0.5
2,213,384	-		IAI47_10440	0.23	+0.3
2,213,473	-		IAI47_10440	0.43	-1.3
2,213,494	+		IAI47_10440	0.48	-0.1
2,213,494	+		IAI47_10440	0.48	-0.2
2,213,495	-		IAI47_10440	0.48	-0.9
2,213,495	-		IAI47_10440	0.48	+0.9
2,213,495	-		IAI47_10440	0.48	+0.0
2,213,495	-		IAI47_10440	0.48	+0.8
2,213,495	-		IAI47_10440	0.48	-0.7
2,213,495	-		IAI47_10440	0.48	-1.0
2,213,496	+		IAI47_10440	0.48	-0.1
2,213,496	+		IAI47_10440	0.48	-0.6
2,213,496	+		IAI47_10440	0.48	+1.1
2,213,496	+		IAI47_10440	0.48	+0.6
2,213,496	+		IAI47_10440	0.48	-0.9
2,213,497	-		IAI47_10440	0.49	-0.4
2,213,497	-		IAI47_10440	0.49	-0.2
2,213,497	-		IAI47_10440	0.49	-2.1
2,213,497	-		IAI47_10440	0.49	-1.7
2,213,551	+		IAI47_10440	0.61	+1.6
2,213,551	+		IAI47_10440	0.61	+0.0
2,213,551	+		IAI47_10440	0.61	+0.3
2,213,551	+		IAI47_10440	0.61	-0.1
2,213,552	-		IAI47_10440	0.61	-1.5
2,213,552	-		IAI47_10440	0.61	+0.1
2,213,552	-		IAI47_10440	0.61	+0.1
2,213,571	+		IAI47_10440	0.65	-0.5
2,213,571	+		IAI47_10440	0.65	-0.6
2,213,572	-		IAI47_10440	0.66	+0.7
2,213,572	-		IAI47_10440	0.66	-0.6
2,213,580	-		IAI47_10440	0.67	-0.5
2,213,639	+		IAI47_10440	0.81	-1.0
2,213,639	+		IAI47_10440	0.81	+0.8
2,213,640	-		IAI47_10440	0.81	+0.6
2,213,640	-		IAI47_10440	0.81	+0.3
2,213,640	-		IAI47_10440	0.81	+1.1
2,213,640	-		IAI47_10440	0.81	+0.6
2,213,712	+				-1.4
2,213,713	-				-2.4
2,213,796	+				-0.8
2,213,796	+				+1.4
2,213,796	+				-1.0
2,213,806	+				-0.4
2,213,815	+				-0.1
2,213,815	+				-1.1
2,213,815	+				-0.7
2,213,815	+				-0.2
2,213,815	+				-0.6
2,213,815	+				+0.1
2,213,815	+				+0.3
2,213,815	+				-0.8
2,213,815	+				-0.4