Strain Fitness in Pantoea sp. MT58 around IAI47_10210

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,157,899	+		IAI47_10205	0.24	-0.6
2,157,899	+		IAI47_10205	0.24	+0.4
2,157,900	-		IAI47_10205	0.24	-1.6
2,157,900	-		IAI47_10205	0.24	-0.1
2,157,901	+		IAI47_10205	0.24	-0.2
2,157,902	-		IAI47_10205	0.25	+0.8
2,157,902	-		IAI47_10205	0.25	-1.5
2,157,902	-		IAI47_10205	0.25	+0.3
2,157,902	-		IAI47_10205	0.25	-0.3
2,157,902	-		IAI47_10205	0.25	-0.8
2,157,908	+		IAI47_10205	0.25	+0.5
2,157,909	-		IAI47_10205	0.25	-0.5
2,157,930	+		IAI47_10205	0.27	-0.1
2,157,930	+		IAI47_10205	0.27	-0.1
2,157,931	-		IAI47_10205	0.27	-0.7
2,158,010	+		IAI47_10205	0.34	+0.7
2,158,051	+		IAI47_10205	0.38	+0.3
2,158,051	+		IAI47_10205	0.38	-0.4
2,158,051	+		IAI47_10205	0.38	+1.9
2,158,052	-		IAI47_10205	0.38	+0.6
2,158,052	-		IAI47_10205	0.38	+0.6
2,158,052	-		IAI47_10205	0.38	-0.5
2,158,052	-		IAI47_10205	0.38	+1.5
2,158,052	-		IAI47_10205	0.38	+0.5
2,158,054	+		IAI47_10205	0.38	+0.3
2,158,055	-		IAI47_10205	0.38	-0.4
2,158,055	-		IAI47_10205	0.38	-0.1
2,158,055	-		IAI47_10205	0.38	-0.1
2,158,115	-		IAI47_10205	0.43	-0.5
2,158,179	-		IAI47_10205	0.49	-1.6
2,158,179	-		IAI47_10205	0.49	-0.1
2,158,195	+		IAI47_10205	0.50	+0.1
2,158,196	-		IAI47_10205	0.50	+2.5
2,158,241	+		IAI47_10205	0.54	-1.7
2,158,242	-		IAI47_10205	0.54	+0.3
2,158,260	-		IAI47_10205	0.56	+1.1
2,158,277	+		IAI47_10205	0.57	+0.5
2,158,277	+		IAI47_10205	0.57	-1.3
2,158,278	-		IAI47_10205	0.57	-1.5
2,158,278	-		IAI47_10205	0.57	-0.5
2,158,278	-		IAI47_10205	0.57	+0.7
2,158,425	-		IAI47_10205	0.70	-2.6
2,158,499	+		IAI47_10205	0.77	-1.3
2,158,499	+		IAI47_10205	0.77	+1.3
2,158,499	+		IAI47_10205	0.77	-1.2
2,158,501	+		IAI47_10205	0.77	-0.5
2,158,501	+		IAI47_10205	0.77	+1.8
2,158,501	+		IAI47_10205	0.77	-1.5
2,158,501	+		IAI47_10205	0.77	+0.3
2,158,502	-		IAI47_10205	0.77	-2.5
2,158,674	-				-0.5
2,158,681	+				-1.1
2,158,682	-				-2.7
2,158,682	-				+0.9
2,158,705	+				+1.5
2,158,705	+				-1.1
2,158,705	+				+0.5
2,158,705	+				+0.4
2,158,705	+				-1.2
2,158,706	-				-0.9
2,158,706	-				-0.9
2,158,706	-				-0.2
2,158,751	+				+1.5
2,158,752	-				+1.4
2,158,752	-				+0.1
2,158,752	-				-0.3
2,158,771	+				+1.0
2,158,771	+				+0.5
2,158,772	-				+0.5
2,158,787	+		IAI47_10210	0.13	+1.2
2,158,787	+		IAI47_10210	0.13	-0.1
2,158,787	+		IAI47_10210	0.13	+0.4
2,158,787	+		IAI47_10210	0.13	+3.5
2,158,787	+		IAI47_10210	0.13	+1.6
2,158,788	-		IAI47_10210	0.14	-0.2
2,158,788	-		IAI47_10210	0.14	-2.1
2,158,808	-		IAI47_10210	0.21	-0.7
2,158,808	-		IAI47_10210	0.21	-0.6
2,158,808	-		IAI47_10210	0.21	-2.0
2,158,875	+		IAI47_10210	0.45	+3.1
2,158,876	-		IAI47_10210	0.45	+0.4
2,158,947	-		IAI47_10210	0.71	+1.4
2,158,962	+		IAI47_10210	0.76	+2.0
2,158,963	-		IAI47_10210	0.76	+1.5
2,158,986	+		IAI47_10210	0.85	-1.7
2,158,986	+		IAI47_10210	0.85	+0.5
2,158,986	+		IAI47_10210	0.85	-1.3
2,158,987	-		IAI47_10210	0.85	-0.1
2,158,987	-		IAI47_10210	0.85	-1.7
2,158,987	-		IAI47_10210	0.85	-0.2
2,158,987	-		IAI47_10210	0.85	-0.5
2,159,034	-				-0.1
2,159,034	-				+0.3
2,159,034	-				-0.5
2,159,034	-				-1.5
2,159,034	-				+0.0
2,159,035	+				-0.6
2,159,035	+				-0.7
2,159,035	+				+1.1
2,159,036	-				+1.1
2,159,036	-				-0.3
2,159,102	+				-1.2
2,159,102	+				+0.2
2,159,102	+				+1.7
2,159,102	+				-1.9
2,159,102	+				+1.8
2,159,103	-				-0.7
2,159,134	+		IAI47_10215	0.13	-0.2
2,159,135	-		IAI47_10215	0.14	-0.1
2,159,148	+		IAI47_10215	0.15	+0.3
2,159,148	+		IAI47_10215	0.15	+0.2
2,159,148	+		IAI47_10215	0.15	-1.5
2,159,148	+		IAI47_10215	0.15	+0.2
2,159,198	+		IAI47_10215	0.22	-1.2
2,159,199	-		IAI47_10215	0.22	-1.2
2,159,199	-		IAI47_10215	0.22	+0.2
2,159,199	-		IAI47_10215	0.22	-0.3
2,159,264	+		IAI47_10215	0.31	-0.5
2,159,265	-		IAI47_10215	0.31	+0.6
2,159,270	+		IAI47_10215	0.31	+0.5
2,159,270	+		IAI47_10215	0.31	+0.7
2,159,294	+		IAI47_10215	0.35	-0.3
2,159,400	+		IAI47_10215	0.49	+2.1
2,159,401	-		IAI47_10215	0.49	+1.8
2,159,405	+		IAI47_10215	0.49	+1.2
2,159,405	+		IAI47_10215	0.49	-0.9
2,159,405	+		IAI47_10215	0.49	-1.6
2,159,405	+		IAI47_10215	0.49	+1.5
2,159,405	+		IAI47_10215	0.49	+1.5
2,159,405	+		IAI47_10215	0.49	-2.7
2,159,406	-		IAI47_10215	0.49	+1.1
2,159,406	-		IAI47_10215	0.49	-1.6
2,159,406	-		IAI47_10215	0.49	+0.5
2,159,406	-		IAI47_10215	0.49	+0.4
2,159,406	-		IAI47_10215	0.49	-0.9
2,159,406	-		IAI47_10215	0.49	+1.4
2,159,589	+		IAI47_10215	0.74	+3.3
2,159,590	-		IAI47_10215	0.74	+1.1
2,159,590	-		IAI47_10215	0.74	-2.0
2,159,630	+		IAI47_10215	0.79	-1.3
2,159,633	+		IAI47_10215	0.79	+0.9
2,159,634	-		IAI47_10215	0.80	+0.8
2,159,634	-		IAI47_10215	0.80	-0.9
2,159,634	-		IAI47_10215	0.80	+0.1
2,159,634	-		IAI47_10215	0.80	-0.0
2,159,634	-		IAI47_10215	0.80	-2.8
2,159,634	-		IAI47_10215	0.80	+0.4
2,159,686	-		IAI47_10215	0.87	-0.3
2,159,716	-				-1.4
2,159,720	+				+0.5
2,159,720	+				-1.7
2,159,720	+				-0.9
2,159,720	+				-2.1
2,159,720	+				-0.5
2,159,720	+				+0.3
2,159,720	+				+1.0
2,159,720	+				+0.5
2,159,720	+				-0.2
2,159,720	+				-1.3
2,159,721	-				+0.5
2,159,721	-				+0.4
2,159,721	-				+0.7
2,159,721	-				+0.9
2,159,721	-				-1.0
2,159,721	-				+0.0
2,159,721	-				+2.3
2,159,721	-				-0.8
2,159,721	-				+0.9
2,159,721	-				+0.5
2,159,723	+				-1.9
2,159,723	+				+1.4
2,159,723	+				-0.2
2,159,723	+				+0.6
2,159,723	+				-0.7
2,159,724	-				+2.1
2,159,724	-				-0.2
2,159,724	-				+1.2
2,159,792	+				+1.0
2,159,833	+				+1.3
2,159,834	-				+2.1
2,159,834	-				-0.0
2,159,877	+				+1.0
2,159,898	+		IAI47_10220	0.12	+0.5
2,159,899	-		IAI47_10220	0.12	+0.1
2,159,899	-		IAI47_10220	0.12	+0.5
2,159,899	-		IAI47_10220	0.12	+0.5