Strain Fitness in Pantoea sp. MT58 around IAI47_09950

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,106,175	+				-0.8
2,106,175	+				-0.9
2,106,176	-				-1.5
2,106,176	-				+0.5
2,106,179	+				-1.0
2,106,179	+				+1.5
2,106,179	+				+1.1
2,106,179	+				-1.8
2,106,180	-				-1.3
2,106,180	-				-2.6
2,106,198	-				+0.5
2,106,198	-				-0.0
2,106,250	-				+1.7
2,106,385	+				+0.3
2,106,385	+				+0.4
2,106,386	-				-0.6
2,106,505	+				+1.2
2,106,549	+				+1.1
2,106,549	+				+0.7
2,106,549	+				+1.0
2,106,561	+				-1.4
2,106,562	-				+3.5
2,106,564	+				+1.1
2,106,565	-				+0.2
2,106,586	-				+0.5
2,106,605	+				+0.2
2,106,606	-				-0.2
2,106,630	-				+1.8
2,106,665	+				+0.6
2,106,665	+				+1.4
2,106,682	+				+0.2
2,106,682	+				-2.4
2,106,683	-				+0.8
2,106,703	+				+1.7
2,106,729	+				-0.7
2,106,729	+				+1.9
2,106,729	+				+1.1
2,106,729	+				-1.1
2,106,729	+				+0.8
2,106,730	-				-0.7
2,106,730	-				-1.5
2,106,730	-				-1.8
2,106,730	-				+0.3
2,106,748	+				-0.0
2,106,748	+				+0.8
2,106,748	+				+0.3
2,106,748	+				-0.1
2,106,814	+		IAI47_09945	0.23	-0.7
2,106,814	+		IAI47_09945	0.23	+0.2
2,106,814	+		IAI47_09945	0.23	+1.3
2,106,814	+		IAI47_09945	0.23	+0.6
2,106,815	-		IAI47_09945	0.23	+0.7
2,106,824	+		IAI47_09945	0.25	+0.5
2,106,887	+		IAI47_09945	0.40	-0.7
2,106,896	-		IAI47_09945	0.42	-1.1
2,106,978	+		IAI47_09945	0.62	-0.2
2,106,979	-		IAI47_09945	0.62	-0.3
2,106,992	+		IAI47_09945	0.65	+1.1
2,107,009	-		IAI47_09945	0.69	-1.8
2,107,083	+		IAI47_09945	0.87	+0.1
2,107,083	+		IAI47_09945	0.87	-0.1
2,107,083	+		IAI47_09945	0.87	-1.9
2,107,084	-		IAI47_09945	0.87	+0.1
2,107,089	-		IAI47_09945	0.88	+2.3
2,107,089	-		IAI47_09945	0.88	-0.7
2,107,126	-				+0.3
2,107,126	-				-1.8
2,107,137	+				-2.0
2,107,138	-				+2.7
2,107,138	-				+2.6
2,107,138	-				-1.7
2,107,138	-				-1.4
2,107,138	-				-0.2
2,107,138	-				+0.8
2,107,145	+				+0.5
2,107,146	-				-0.2
2,107,234	+		IAI47_09950	0.18	-0.7
2,107,234	+		IAI47_09950	0.18	-1.0
2,107,234	+		IAI47_09950	0.18	+0.7
2,107,235	-		IAI47_09950	0.19	+0.6
2,107,235	-		IAI47_09950	0.19	+0.4
2,107,254	-		IAI47_09950	0.23	-0.6
2,107,297	+		IAI47_09950	0.33	+0.5
2,107,297	+		IAI47_09950	0.33	+0.7
2,107,297	+		IAI47_09950	0.33	-0.1
2,107,297	+		IAI47_09950	0.33	-0.1
2,107,297	+		IAI47_09950	0.33	-0.5
2,107,309	-		IAI47_09950	0.36	-0.9
2,107,309	-		IAI47_09950	0.36	+0.9
2,107,349	+		IAI47_09950	0.46	-0.5
2,107,350	-		IAI47_09950	0.46	-3.3
2,107,392	-		IAI47_09950	0.56	-0.7
2,107,398	-		IAI47_09950	0.57	-0.1
2,107,409	+		IAI47_09950	0.60	-0.8
2,107,476	+		IAI47_09950	0.76	+1.1
2,107,478	+		IAI47_09950	0.76	+0.2
2,107,499	+		IAI47_09950	0.81	-1.8
2,107,516	+		IAI47_09950	0.85	-0.1
2,107,517	-		IAI47_09950	0.86	+1.6
2,107,517	-		IAI47_09950	0.86	+0.5
2,107,517	-		IAI47_09950	0.86	-0.2
2,107,519	+		IAI47_09950	0.86	-0.8
2,107,519	+		IAI47_09950	0.86	-2.6
2,107,519	+		IAI47_09950	0.86	-0.3
2,107,519	+		IAI47_09950	0.86	-0.9
2,107,519	+		IAI47_09950	0.86	+1.1
2,107,519	+		IAI47_09950	0.86	-1.6
2,107,520	-		IAI47_09950	0.86	+0.0
2,107,520	-		IAI47_09950	0.86	+0.4
2,107,520	-		IAI47_09950	0.86	-1.3
2,107,520	-		IAI47_09950	0.86	-2.4
2,107,520	-		IAI47_09950	0.86	-0.5
2,107,520	-		IAI47_09950	0.86	+1.4
2,107,520	-		IAI47_09950	0.86	+0.2
2,107,661	-		IAI47_09955	0.32	-1.5
2,107,661	-		IAI47_09955	0.32	+0.3
2,107,731	+		IAI47_09955	0.56	+1.2
2,107,732	-		IAI47_09955	0.56	-0.7
2,107,807	+		IAI47_09955	0.83	+0.2
2,107,807	+		IAI47_09955	0.83	+1.1
2,107,807	+		IAI47_09955	0.83	-0.1
2,107,807	+		IAI47_09955	0.83	+0.1
2,107,808	-		IAI47_09955	0.83	+2.8
2,107,860	+				+0.3
2,107,861	-				+0.3
2,107,966	-				-0.1
2,108,013	+				-0.5
2,108,014	-				+0.1
2,108,014	-				-2.2
2,108,057	+				-0.1
2,108,057	+				-0.4
2,108,057	+				+0.5
2,108,057	+				-0.5
2,108,057	+				+0.6
2,108,057	+				-0.1
2,108,057	+				-0.6
2,108,057	+				+0.3
2,108,057	+				-0.5
2,108,057	+				-0.9
2,108,057	+				-0.1
2,108,058	-				-2.0
2,108,058	-				-1.2
2,108,058	-				-0.1
2,108,058	-				+0.5
2,108,058	-				+0.5
2,108,058	-				+1.0
2,108,058	-				-1.8
2,108,058	-				+0.1
2,108,061	+				-2.1
2,108,061	+				-0.5
2,108,061	+				-2.2
2,108,061	+				-1.3
2,108,061	+				+0.3
2,108,061	+				-0.1
2,108,062	-				+0.4
2,108,062	-				-1.0
2,108,062	-				-0.1
2,108,062	-				+0.7
2,108,062	-				-0.3
2,108,062	-				+0.3
2,108,062	-				-0.2
2,108,082	+				-1.7
2,108,082	+				-0.2
2,108,082	+				+1.1
2,108,082	+				-0.1
2,108,082	+				-1.1
2,108,083	-				-1.2
2,108,096	+				-0.2
2,108,096	+				-1.7
2,108,096	+				-0.4
2,108,097	-				+0.2
2,108,128	+				-1.4
2,108,138	+				+0.8
2,108,139	-				+1.6
2,108,139	-				+0.3
2,108,178	+				-0.7
2,108,179	-				-0.1
2,108,179	-				-0.2
2,108,261	+		IAI47_09960	0.15	-0.4
2,108,261	+		IAI47_09960	0.15	+0.9
2,108,294	+		IAI47_09960	0.18	-0.2
2,108,294	+		IAI47_09960	0.18	+1.7
2,108,295	-		IAI47_09960	0.18	+0.4
2,108,330	+		IAI47_09960	0.21	+0.0
2,108,330	+		IAI47_09960	0.21	-1.1
2,108,331	-		IAI47_09960	0.21	-0.4
2,108,331	-		IAI47_09960	0.21	+0.5
2,108,344	+		IAI47_09960	0.22	+0.8
2,108,344	+		IAI47_09960	0.22	-0.9
2,108,344	+		IAI47_09960	0.22	+1.5
2,108,393	+		IAI47_09960	0.27	-0.9
2,108,394	-		IAI47_09960	0.27	-0.6
2,108,417	+		IAI47_09960	0.29	-1.1
2,108,418	-		IAI47_09960	0.29	-1.6
2,108,488	+		IAI47_09960	0.35	-2.1
2,108,489	-		IAI47_09960	0.35	+1.1
2,108,489	-		IAI47_09960	0.35	-0.7
2,108,508	+		IAI47_09960	0.37	-1.9
2,108,508	+		IAI47_09960	0.37	-0.1
2,108,508	+		IAI47_09960	0.37	+0.6
2,108,509	-		IAI47_09960	0.37	+0.5
2,108,509	-		IAI47_09960	0.37	-0.3
2,108,509	-		IAI47_09960	0.37	-0.5
2,108,509	-		IAI47_09960	0.37	+0.1
2,108,526	-		IAI47_09960	0.39	-0.1
2,108,526	-		IAI47_09960	0.39	+0.6
2,108,526	-		IAI47_09960	0.39	-1.2
2,108,563	+		IAI47_09960	0.42	+0.1