Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21245 and IAI47_21250 are separated by 104 nucleotides IAI47_21250 and IAI47_21255 are separated by 3 nucleotides IAI47_21255 and IAI47_21260 are separated by 180 nucleotides
IAI47_21245: IAI47_21245 - alcohol dehydrogenase catalytic domain-containing protein, at 506,194 to 507,273
_21245
IAI47_21250: IAI47_21250 - helix-turn-helix domain-containing protein, at 507,378 to 508,148
_21250
IAI47_21255: IAI47_21255 - TetR/AcrR family transcriptional regulator, at 508,152 to 508,721
_21255
IAI47_21260: IAI47_21260 - glutathione S-transferase, at 508,902 to 509,564
_21260
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 506.406 kb on - strand, within IAI47_21245 at 506.468 kb on + strand, within IAI47_21245 at 506.468 kb on + strand, within IAI47_21245 at 506.484 kb on + strand, within IAI47_21245 at 506.484 kb on + strand, within IAI47_21245 at 506.485 kb on - strand, within IAI47_21245 at 506.580 kb on + strand, within IAI47_21245 at 506.580 kb on + strand, within IAI47_21245 at 506.580 kb on + strand, within IAI47_21245 at 506.581 kb on - strand, within IAI47_21245 at 506.685 kb on + strand, within IAI47_21245 at 506.686 kb on - strand, within IAI47_21245 at 506.686 kb on - strand, within IAI47_21245 at 506.755 kb on + strand, within IAI47_21245 at 506.756 kb on - strand, within IAI47_21245 at 506.788 kb on + strand, within IAI47_21245 at 506.788 kb on + strand, within IAI47_21245 at 506.788 kb on + strand, within IAI47_21245 at 506.789 kb on - strand, within IAI47_21245 at 506.798 kb on + strand, within IAI47_21245 at 506.799 kb on - strand, within IAI47_21245 at 506.799 kb on - strand, within IAI47_21245 at 506.799 kb on - strand, within IAI47_21245 at 506.799 kb on - strand, within IAI47_21245 at 506.799 kb on - strand, within IAI47_21245 at 506.814 kb on + strand, within IAI47_21245 at 506.814 kb on + strand, within IAI47_21245 at 506.814 kb on + strand, within IAI47_21245 at 506.814 kb on + strand, within IAI47_21245 at 506.815 kb on - strand, within IAI47_21245 at 506.815 kb on - strand, within IAI47_21245 at 506.815 kb on - strand, within IAI47_21245 at 506.815 kb on - strand, within IAI47_21245 at 506.921 kb on + strand, within IAI47_21245 at 506.921 kb on + strand, within IAI47_21245 at 506.921 kb on + strand, within IAI47_21245 at 506.921 kb on + strand, within IAI47_21245 at 506.921 kb on + strand, within IAI47_21245 at 506.922 kb on - strand, within IAI47_21245 at 506.922 kb on - strand, within IAI47_21245 at 506.922 kb on - strand, within IAI47_21245 at 506.922 kb on - strand, within IAI47_21245 at 506.994 kb on + strand, within IAI47_21245 at 506.995 kb on - strand, within IAI47_21245 at 506.995 kb on - strand, within IAI47_21245 at 507.042 kb on + strand, within IAI47_21245 at 507.043 kb on - strand, within IAI47_21245 at 507.116 kb on - strand, within IAI47_21245 at 507.116 kb on - strand, within IAI47_21245 at 507.122 kb on + strand, within IAI47_21245 at 507.122 kb on + strand, within IAI47_21245 at 507.123 kb on - strand, within IAI47_21245 at 507.123 kb on - strand, within IAI47_21245 at 507.142 kb on + strand, within IAI47_21245 at 507.142 kb on + strand, within IAI47_21245 at 507.259 kb on + strand at 507.260 kb on - strand at 507.260 kb on - strand at 507.273 kb on + strand at 507.273 kb on + strand at 507.273 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.279 kb on + strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.280 kb on - strand at 507.296 kb on - strand at 507.308 kb on + strand at 507.308 kb on + strand at 507.309 kb on - strand at 507.310 kb on + strand at 507.310 kb on + strand at 507.310 kb on + strand at 507.310 kb on + strand at 507.311 kb on - strand at 507.340 kb on + strand at 507.341 kb on - strand at 507.346 kb on + strand at 507.346 kb on + strand at 507.347 kb on - strand at 507.347 kb on - strand at 507.347 kb on - strand at 507.354 kb on + strand at 507.354 kb on + strand at 507.354 kb on + strand at 507.355 kb on - strand at 507.355 kb on - strand at 507.355 kb on - strand at 507.355 kb on - strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.356 kb on + strand at 507.357 kb on - strand at 507.357 kb on - strand at 507.357 kb on - strand at 507.372 kb on + strand at 507.372 kb on + strand at 507.397 kb on + strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.398 kb on - strand at 507.451 kb on + strand at 507.451 kb on + strand at 507.452 kb on - strand at 507.452 kb on - strand at 507.452 kb on - strand at 507.452 kb on - strand at 507.521 kb on + strand, within IAI47_21250 at 507.522 kb on - strand, within IAI47_21250 at 507.531 kb on + strand, within IAI47_21250 at 507.532 kb on - strand, within IAI47_21250 at 507.534 kb on - strand, within IAI47_21250 at 507.611 kb on + strand, within IAI47_21250 at 507.611 kb on + strand, within IAI47_21250 at 507.612 kb on - strand, within IAI47_21250 at 507.612 kb on - strand, within IAI47_21250 at 507.641 kb on + strand, within IAI47_21250 at 507.641 kb on + strand, within IAI47_21250 at 507.691 kb on + strand, within IAI47_21250 at 507.758 kb on - strand, within IAI47_21250 at 507.803 kb on - strand, within IAI47_21250 at 507.881 kb on + strand, within IAI47_21250 at 507.881 kb on + strand, within IAI47_21250 at 507.882 kb on - strand, within IAI47_21250 at 507.921 kb on + strand, within IAI47_21250 at 507.922 kb on - strand, within IAI47_21250 at 507.922 kb on - strand, within IAI47_21250 at 508.018 kb on + strand, within IAI47_21250 at 508.019 kb on - strand, within IAI47_21250 at 508.019 kb on - strand, within IAI47_21250 at 508.019 kb on - strand, within IAI47_21250 at 508.083 kb on + strand at 508.083 kb on + strand at 508.131 kb on + strand at 508.131 kb on + strand at 508.131 kb on + strand at 508.132 kb on - strand at 508.132 kb on - strand at 508.146 kb on + strand at 508.146 kb on + strand at 508.146 kb on + strand at 508.147 kb on - strand at 508.186 kb on + strand at 508.186 kb on + strand at 508.186 kb on + strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.187 kb on - strand at 508.193 kb on + strand at 508.193 kb on + strand at 508.194 kb on - strand at 508.194 kb on - strand at 508.214 kb on + strand, within IAI47_21255 at 508.215 kb on - strand, within IAI47_21255 at 508.217 kb on + strand, within IAI47_21255 at 508.217 kb on + strand, within IAI47_21255 at 508.218 kb on - strand, within IAI47_21255 at 508.218 kb on - strand, within IAI47_21255 at 508.239 kb on + strand, within IAI47_21255 at 508.264 kb on + strand, within IAI47_21255 at 508.299 kb on - strand, within IAI47_21255 at 508.299 kb on - strand, within IAI47_21255 at 508.302 kb on - strand, within IAI47_21255 at 508.302 kb on - strand, within IAI47_21255 at 508.320 kb on - strand, within IAI47_21255 at 508.399 kb on + strand, within IAI47_21255 at 508.400 kb on - strand, within IAI47_21255 at 508.412 kb on + strand, within IAI47_21255 at 508.413 kb on - strand, within IAI47_21255 at 508.455 kb on - strand, within IAI47_21255 at 508.521 kb on + strand, within IAI47_21255 at 508.546 kb on + strand, within IAI47_21255 at 508.546 kb on + strand, within IAI47_21255 at 508.546 kb on + strand, within IAI47_21255 at 508.547 kb on - strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.597 kb on + strand, within IAI47_21255 at 508.598 kb on - strand, within IAI47_21255 at 508.598 kb on - strand, within IAI47_21255 at 508.598 kb on - strand, within IAI47_21255 at 508.601 kb on + strand, within IAI47_21255 at 508.602 kb on - strand at 508.613 kb on + strand, within IAI47_21255 at 508.656 kb on - strand, within IAI47_21255 at 508.656 kb on - strand, within IAI47_21255 at 508.657 kb on + strand, within IAI47_21255 at 508.657 kb on + strand, within IAI47_21255 at 508.658 kb on - strand, within IAI47_21255 at 508.658 kb on - strand, within IAI47_21255 at 508.697 kb on + strand at 508.697 kb on + strand at 508.698 kb on - strand at 508.737 kb on - strand at 508.756 kb on - strand at 508.756 kb on - strand at 508.758 kb on - strand at 508.804 kb on + strand at 508.853 kb on - strand at 508.865 kb on + strand at 508.865 kb on + strand at 508.866 kb on - strand at 508.866 kb on - strand at 508.866 kb on - strand at 508.866 kb on - strand at 508.911 kb on + strand at 508.911 kb on + strand at 508.912 kb on - strand at 508.912 kb on - strand at 508.920 kb on + strand at 508.920 kb on + strand at 508.920 kb on + strand at 508.920 kb on + strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.921 kb on - strand at 508.932 kb on + strand at 509.049 kb on + strand, within IAI47_21260 at 509.050 kb on - strand, within IAI47_21260 at 509.068 kb on + strand, within IAI47_21260 at 509.069 kb on - strand, within IAI47_21260 at 509.071 kb on + strand, within IAI47_21260 at 509.072 kb on - strand, within IAI47_21260 at 509.072 kb on - strand, within IAI47_21260 at 509.121 kb on + strand, within IAI47_21260 at 509.122 kb on - strand, within IAI47_21260
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 506,406 - IAI47_21245 0.20 +1.3 506,468 + IAI47_21245 0.25 -0.5 506,468 + IAI47_21245 0.25 -0.5 506,484 + IAI47_21245 0.27 -0.9 506,484 + IAI47_21245 0.27 -0.2 506,485 - IAI47_21245 0.27 +2.6 506,580 + IAI47_21245 0.36 -0.8 506,580 + IAI47_21245 0.36 +1.1 506,580 + IAI47_21245 0.36 -0.6 506,581 - IAI47_21245 0.36 -0.1 506,685 + IAI47_21245 0.45 -1.5 506,686 - IAI47_21245 0.46 -0.6 506,686 - IAI47_21245 0.46 +0.1 506,755 + IAI47_21245 0.52 +1.2 506,756 - IAI47_21245 0.52 +0.4 506,788 + IAI47_21245 0.55 -1.2 506,788 + IAI47_21245 0.55 -0.0 506,788 + IAI47_21245 0.55 -0.2 506,789 - IAI47_21245 0.55 +1.2 506,798 + IAI47_21245 0.56 +1.9 506,799 - IAI47_21245 0.56 -0.9 506,799 - IAI47_21245 0.56 +1.2 506,799 - IAI47_21245 0.56 -0.7 506,799 - IAI47_21245 0.56 +0.1 506,799 - IAI47_21245 0.56 +1.4 506,814 + IAI47_21245 0.57 -0.2 506,814 + IAI47_21245 0.57 +2.6 506,814 + IAI47_21245 0.57 -0.7 506,814 + IAI47_21245 0.57 -2.8 506,815 - IAI47_21245 0.57 -0.3 506,815 - IAI47_21245 0.57 -0.7 506,815 - IAI47_21245 0.57 +2.0 506,815 - IAI47_21245 0.57 -1.3 506,921 + IAI47_21245 0.67 +0.9 506,921 + IAI47_21245 0.67 +0.6 506,921 + IAI47_21245 0.67 +0.6 506,921 + IAI47_21245 0.67 -3.1 506,921 + IAI47_21245 0.67 -1.7 506,922 - IAI47_21245 0.67 +2.2 506,922 - IAI47_21245 0.67 +2.0 506,922 - IAI47_21245 0.67 -0.1 506,922 - IAI47_21245 0.67 +2.9 506,994 + IAI47_21245 0.74 -0.2 506,995 - IAI47_21245 0.74 -0.1 506,995 - IAI47_21245 0.74 +0.9 507,042 + IAI47_21245 0.79 -1.6 507,043 - IAI47_21245 0.79 -0.2 507,116 - IAI47_21245 0.85 +1.1 507,116 - IAI47_21245 0.85 +1.3 507,122 + IAI47_21245 0.86 -0.6 507,122 + IAI47_21245 0.86 +1.1 507,123 - IAI47_21245 0.86 +0.2 507,123 - IAI47_21245 0.86 +1.6 507,142 + IAI47_21245 0.88 +1.5 507,142 + IAI47_21245 0.88 -0.3 507,259 + -2.1 507,260 - -1.9 507,260 - +0.6 507,273 + -1.2 507,273 + -1.3 507,273 + -1.3 507,279 + +1.4 507,279 + +1.1 507,279 + -0.3 507,279 + -0.8 507,279 + +0.3 507,279 + -1.6 507,279 + +0.6 507,279 + -0.9 507,279 + +0.8 507,279 + -0.8 507,280 - +0.7 507,280 - -0.3 507,280 - -1.2 507,280 - -1.3 507,280 - -0.1 507,280 - +1.0 507,280 - -0.6 507,280 - -0.3 507,296 - -0.9 507,308 + -0.0 507,308 + -0.4 507,309 - +0.9 507,310 + +1.4 507,310 + -0.3 507,310 + +0.2 507,310 + +0.4 507,311 - -1.0 507,340 + +1.0 507,341 - -0.4 507,346 + -1.6 507,346 + +2.4 507,347 - -1.5 507,347 - +0.2 507,347 - +1.6 507,354 + -0.3 507,354 + -0.4 507,354 + -0.1 507,355 - -0.3 507,355 - +0.6 507,355 - +1.4 507,355 - -0.1 507,356 + -1.3 507,356 + +1.0 507,356 + +0.7 507,356 + -1.8 507,356 + +1.2 507,356 + -0.2 507,357 - -0.2 507,357 - -0.3 507,357 - +0.8 507,372 + +0.2 507,372 + +1.7 507,397 + +0.4 507,398 - +0.2 507,398 - -1.1 507,398 - +0.3 507,398 - +1.3 507,398 - -0.2 507,398 - +0.1 507,451 + -0.0 507,451 + -1.3 507,452 - -0.2 507,452 - -1.3 507,452 - -1.2 507,452 - +2.1 507,521 + IAI47_21250 0.19 +1.2 507,522 - IAI47_21250 0.19 +0.6 507,531 + IAI47_21250 0.20 +0.9 507,532 - IAI47_21250 0.20 +0.3 507,534 - IAI47_21250 0.20 +0.7 507,611 + IAI47_21250 0.30 +1.7 507,611 + IAI47_21250 0.30 +0.5 507,612 - IAI47_21250 0.30 -0.9 507,612 - IAI47_21250 0.30 +0.0 507,641 + IAI47_21250 0.34 +0.5 507,641 + IAI47_21250 0.34 -0.8 507,691 + IAI47_21250 0.41 +0.4 507,758 - IAI47_21250 0.49 +2.5 507,803 - IAI47_21250 0.55 +0.4 507,881 + IAI47_21250 0.65 +2.5 507,881 + IAI47_21250 0.65 -0.1 507,882 - IAI47_21250 0.65 +1.6 507,921 + IAI47_21250 0.70 +0.4 507,922 - IAI47_21250 0.71 +2.4 507,922 - IAI47_21250 0.71 +4.3 508,018 + IAI47_21250 0.83 +0.3 508,019 - IAI47_21250 0.83 +0.2 508,019 - IAI47_21250 0.83 +1.4 508,019 - IAI47_21250 0.83 +0.9 508,083 + -1.1 508,083 + -0.5 508,131 + +0.9 508,131 + +1.1 508,131 + -0.3 508,132 - +0.7 508,132 - -1.3 508,146 + +0.8 508,146 + -0.7 508,146 + +2.9 508,147 - +0.2 508,186 + +1.2 508,186 + +0.6 508,186 + -2.1 508,187 - -0.7 508,187 - +1.0 508,187 - +1.7 508,187 - +0.2 508,187 - -0.8 508,193 + -1.5 508,193 + -0.1 508,194 - -0.9 508,194 - -0.1 508,214 + IAI47_21255 0.11 -0.4 508,215 - IAI47_21255 0.11 -0.8 508,217 + IAI47_21255 0.11 -1.7 508,217 + IAI47_21255 0.11 +0.4 508,218 - IAI47_21255 0.12 -1.4 508,218 - IAI47_21255 0.12 -0.8 508,239 + IAI47_21255 0.15 -0.1 508,264 + IAI47_21255 0.20 +1.7 508,299 - IAI47_21255 0.26 -1.2 508,299 - IAI47_21255 0.26 +0.5 508,302 - IAI47_21255 0.26 -1.4 508,302 - IAI47_21255 0.26 -1.4 508,320 - IAI47_21255 0.29 +1.2 508,399 + IAI47_21255 0.43 -2.7 508,400 - IAI47_21255 0.44 +1.7 508,412 + IAI47_21255 0.46 +1.1 508,413 - IAI47_21255 0.46 -0.1 508,455 - IAI47_21255 0.53 +1.2 508,521 + IAI47_21255 0.65 +0.3 508,546 + IAI47_21255 0.69 +0.4 508,546 + IAI47_21255 0.69 +1.3 508,546 + IAI47_21255 0.69 -0.9 508,547 - IAI47_21255 0.69 +0.8 508,597 + IAI47_21255 0.78 -0.3 508,597 + IAI47_21255 0.78 +1.1 508,597 + IAI47_21255 0.78 +2.2 508,597 + IAI47_21255 0.78 -2.2 508,598 - IAI47_21255 0.78 +1.4 508,598 - IAI47_21255 0.78 +0.8 508,598 - IAI47_21255 0.78 +0.2 508,601 + IAI47_21255 0.79 +1.1 508,602 - +1.4 508,613 + IAI47_21255 0.81 -0.2 508,656 - IAI47_21255 0.88 -0.8 508,656 - IAI47_21255 0.88 -0.6 508,657 + IAI47_21255 0.89 -1.2 508,657 + IAI47_21255 0.89 -0.3 508,658 - IAI47_21255 0.89 +1.3 508,658 - IAI47_21255 0.89 +0.1 508,697 + +2.1 508,697 + +0.1 508,698 - -2.2 508,737 - +1.7 508,756 - -1.7 508,756 - +1.1 508,758 - +1.5 508,804 + +0.1 508,853 - -0.2 508,865 + +1.1 508,865 + -0.3 508,866 - +0.1 508,866 - -1.3 508,866 - -1.4 508,866 - -0.1 508,911 + -0.4 508,911 + +0.3 508,912 - -0.6 508,912 - -0.6 508,920 + -2.2 508,920 + -0.7 508,920 + +0.4 508,920 + -0.7 508,921 - -0.2 508,921 - +2.3 508,921 - +1.6 508,921 - +0.2 508,921 - -0.8 508,921 - -0.8 508,932 + -0.9 509,049 + IAI47_21260 0.22 +1.4 509,050 - IAI47_21260 0.22 -0.3 509,068 + IAI47_21260 0.25 +0.7 509,069 - IAI47_21260 0.25 -0.8 509,071 + IAI47_21260 0.25 +0.1 509,072 - IAI47_21260 0.26 +0.2 509,072 - IAI47_21260 0.26 +0.2 509,121 + IAI47_21260 0.33 +0.7 509,122 - IAI47_21260 0.33 -0.8
Or see this region's nucleotide sequence