Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20940 and IAI47_20945 are separated by 71 nucleotides IAI47_20945 and IAI47_20950 are separated by 394 nucleotides IAI47_20950 and IAI47_20955 are separated by 364 nucleotides
IAI47_20940: IAI47_20940 - hypothetical protein, at 436,186 to 436,743
_20940
IAI47_20945: IAI47_20945 - hypothetical protein, at 436,815 to 437,156
_20945
IAI47_20950: IAI47_20950 - DUF2628 domain-containing protein, at 437,551 to 437,988
_20950
IAI47_20955: IAI47_20955 - M48 family metallopeptidase, at 438,353 to 440,212
_20955
Position (kb) 437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 436.690 kb on + strand at 436.691 kb on - strand at 436.716 kb on + strand at 436.716 kb on + strand at 436.716 kb on + strand at 436.716 kb on + strand at 436.717 kb on - strand at 436.717 kb on - strand at 436.723 kb on + strand at 436.724 kb on - strand at 436.736 kb on - strand at 436.760 kb on + strand at 436.761 kb on - strand at 436.761 kb on - strand at 436.767 kb on + strand at 436.767 kb on + strand at 436.816 kb on + strand at 436.816 kb on + strand at 436.816 kb on + strand at 436.831 kb on + strand at 436.832 kb on - strand at 436.835 kb on + strand at 436.835 kb on + strand at 436.836 kb on - strand at 436.836 kb on - strand at 436.836 kb on - strand at 436.836 kb on - strand at 437.041 kb on - strand, within IAI47_20945 at 437.041 kb on - strand, within IAI47_20945 at 437.058 kb on - strand, within IAI47_20945 at 437.058 kb on - strand, within IAI47_20945 at 437.058 kb on - strand, within IAI47_20945 at 437.065 kb on + strand, within IAI47_20945 at 437.065 kb on + strand, within IAI47_20945 at 437.065 kb on + strand, within IAI47_20945 at 437.066 kb on - strand, within IAI47_20945 at 437.066 kb on - strand, within IAI47_20945 at 437.066 kb on - strand, within IAI47_20945 at 437.071 kb on + strand, within IAI47_20945 at 437.072 kb on - strand, within IAI47_20945 at 437.090 kb on + strand, within IAI47_20945 at 437.091 kb on - strand, within IAI47_20945 at 437.115 kb on + strand, within IAI47_20945 at 437.116 kb on - strand, within IAI47_20945 at 437.116 kb on - strand, within IAI47_20945 at 437.157 kb on - strand at 437.157 kb on - strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.160 kb on + strand at 437.161 kb on - strand at 437.161 kb on - strand at 437.163 kb on - strand at 437.163 kb on - strand at 437.168 kb on - strand at 437.168 kb on - strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.169 kb on + strand at 437.170 kb on - strand at 437.170 kb on - strand at 437.170 kb on - strand at 437.212 kb on - strand at 437.249 kb on + strand at 437.250 kb on - strand at 437.274 kb on + strand at 437.275 kb on - strand at 437.275 kb on - strand at 437.292 kb on + strand at 437.317 kb on - strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.361 kb on + strand at 437.362 kb on - strand at 437.362 kb on - strand at 437.404 kb on - strand at 437.406 kb on + strand at 437.407 kb on - strand at 437.411 kb on + strand at 437.437 kb on - strand at 437.437 kb on - strand at 437.469 kb on - strand at 437.469 kb on - strand at 437.483 kb on + strand at 437.483 kb on + strand at 437.483 kb on + strand at 437.483 kb on + strand at 437.484 kb on - strand at 437.484 kb on - strand at 437.484 kb on - strand at 437.484 kb on - strand at 437.510 kb on + strand at 437.510 kb on + strand at 437.510 kb on + strand at 437.511 kb on - strand at 437.511 kb on - strand at 437.592 kb on + strand at 437.593 kb on - strand at 437.600 kb on - strand, within IAI47_20950 at 437.642 kb on - strand, within IAI47_20950 at 437.724 kb on - strand, within IAI47_20950 at 437.724 kb on - strand, within IAI47_20950 at 437.749 kb on + strand, within IAI47_20950 at 437.750 kb on - strand, within IAI47_20950 at 437.759 kb on + strand, within IAI47_20950 at 437.799 kb on + strand, within IAI47_20950 at 437.799 kb on + strand, within IAI47_20950 at 437.800 kb on - strand, within IAI47_20950 at 437.812 kb on + strand, within IAI47_20950 at 437.817 kb on + strand, within IAI47_20950 at 437.892 kb on + strand, within IAI47_20950 at 437.893 kb on - strand, within IAI47_20950 at 437.903 kb on - strand, within IAI47_20950 at 437.926 kb on + strand, within IAI47_20950 at 437.927 kb on - strand, within IAI47_20950 at 437.930 kb on - strand, within IAI47_20950 at 437.970 kb on + strand at 437.970 kb on + strand at 438.028 kb on - strand at 438.114 kb on - strand at 438.213 kb on - strand at 438.213 kb on - strand at 438.213 kb on - strand at 438.214 kb on + strand at 438.215 kb on - strand at 438.215 kb on - strand at 438.232 kb on + strand at 438.233 kb on - strand at 438.233 kb on - strand at 438.233 kb on - strand at 438.252 kb on + strand at 438.253 kb on - strand at 438.253 kb on - strand at 438.253 kb on - strand at 438.286 kb on - strand at 438.337 kb on - strand at 438.337 kb on - strand at 438.338 kb on + strand at 438.338 kb on + strand at 438.338 kb on + strand at 438.339 kb on - strand at 438.339 kb on - strand at 438.339 kb on - strand at 438.339 kb on - strand at 438.347 kb on - strand at 438.393 kb on + strand at 438.427 kb on - strand at 438.427 kb on - strand at 438.433 kb on + strand at 438.433 kb on + strand at 438.434 kb on - strand at 438.437 kb on - strand at 438.437 kb on - strand at 438.455 kb on + strand at 438.482 kb on + strand at 438.482 kb on + strand at 438.483 kb on - strand at 438.483 kb on - strand at 438.483 kb on - strand at 438.483 kb on - strand at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.650 kb on + strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.651 kb on - strand, within IAI47_20955 at 438.661 kb on + strand, within IAI47_20955 at 438.662 kb on - strand, within IAI47_20955 at 438.706 kb on - strand, within IAI47_20955 at 438.714 kb on + strand, within IAI47_20955 at 438.714 kb on + strand, within IAI47_20955 at 438.714 kb on + strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.715 kb on - strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.811 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.875 kb on + strand, within IAI47_20955 at 438.876 kb on - strand, within IAI47_20955 at 438.876 kb on - strand, within IAI47_20955 at 438.876 kb on - strand, within IAI47_20955 at 438.878 kb on + strand, within IAI47_20955 at 438.879 kb on - strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.926 kb on + strand, within IAI47_20955 at 438.927 kb on - strand, within IAI47_20955 at 438.927 kb on - strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.929 kb on + strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.930 kb on - strand, within IAI47_20955 at 438.937 kb on + strand, within IAI47_20955 at 438.937 kb on + strand, within IAI47_20955 at 438.937 kb on + strand, within IAI47_20955 at 438.938 kb on - strand, within IAI47_20955 at 438.938 kb on - strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.973 kb on + strand, within IAI47_20955 at 438.974 kb on - strand, within IAI47_20955 at 438.974 kb on - strand, within IAI47_20955
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 436,690 + +0.5 436,691 - +1.3 436,716 + +0.9 436,716 + -0.8 436,716 + -1.4 436,716 + +0.7 436,717 - +1.0 436,717 - +1.1 436,723 + +2.0 436,724 - +0.4 436,736 - -1.5 436,760 + -0.9 436,761 - -0.8 436,761 - -0.5 436,767 + +0.8 436,767 + +1.3 436,816 + -0.4 436,816 + +0.3 436,816 + -1.3 436,831 + -0.2 436,832 - +1.9 436,835 + +0.1 436,835 + -0.2 436,836 - -0.8 436,836 - +0.1 436,836 - -0.7 436,836 - +0.8 437,041 - IAI47_20945 0.66 +1.2 437,041 - IAI47_20945 0.66 +1.0 437,058 - IAI47_20945 0.71 +2.0 437,058 - IAI47_20945 0.71 +0.4 437,058 - IAI47_20945 0.71 +0.1 437,065 + IAI47_20945 0.73 -1.0 437,065 + IAI47_20945 0.73 -0.3 437,065 + IAI47_20945 0.73 +0.2 437,066 - IAI47_20945 0.73 -0.8 437,066 - IAI47_20945 0.73 -1.2 437,066 - IAI47_20945 0.73 -2.0 437,071 + IAI47_20945 0.75 -0.7 437,072 - IAI47_20945 0.75 +0.2 437,090 + IAI47_20945 0.80 +0.4 437,091 - IAI47_20945 0.81 -1.3 437,115 + IAI47_20945 0.88 -0.7 437,116 - IAI47_20945 0.88 -1.1 437,116 - IAI47_20945 0.88 +0.2 437,157 - -1.5 437,157 - -2.9 437,160 + +0.5 437,160 + -0.2 437,160 + +0.2 437,160 + -0.8 437,160 + +0.1 437,160 + +0.7 437,160 + +1.1 437,161 - -0.4 437,161 - -1.4 437,163 - -1.4 437,163 - +1.5 437,168 - +1.1 437,168 - -0.2 437,169 + -0.3 437,169 + +0.3 437,169 + +1.0 437,169 + +1.0 437,169 + -0.0 437,169 + -1.0 437,170 - +0.4 437,170 - +0.5 437,170 - +0.8 437,212 - +0.6 437,249 + +0.6 437,250 - +0.8 437,274 + -0.2 437,275 - -1.3 437,275 - +0.5 437,292 + +0.4 437,317 - -0.3 437,361 + -1.9 437,361 + -1.8 437,361 + -0.4 437,361 + +0.2 437,361 + +0.9 437,361 + +1.0 437,362 - +1.6 437,362 - -0.2 437,404 - -0.6 437,406 + -0.2 437,407 - -0.4 437,411 + -1.1 437,437 - +1.6 437,437 - +0.8 437,469 - +0.6 437,469 - +1.1 437,483 + +1.6 437,483 + -0.4 437,483 + +1.5 437,483 + -1.3 437,484 - -0.4 437,484 - -0.8 437,484 - +1.2 437,484 - +1.2 437,510 + +0.4 437,510 + +0.0 437,510 + +1.5 437,511 - -1.4 437,511 - +1.8 437,592 + -0.4 437,593 - -0.1 437,600 - IAI47_20950 0.11 +1.1 437,642 - IAI47_20950 0.21 -1.6 437,724 - IAI47_20950 0.39 -1.1 437,724 - IAI47_20950 0.39 +1.2 437,749 + IAI47_20950 0.45 +0.3 437,750 - IAI47_20950 0.45 -0.0 437,759 + IAI47_20950 0.47 +1.3 437,799 + IAI47_20950 0.57 +0.4 437,799 + IAI47_20950 0.57 -2.2 437,800 - IAI47_20950 0.57 -0.9 437,812 + IAI47_20950 0.60 +0.1 437,817 + IAI47_20950 0.61 -1.4 437,892 + IAI47_20950 0.78 +2.7 437,893 - IAI47_20950 0.78 -1.1 437,903 - IAI47_20950 0.80 +2.2 437,926 + IAI47_20950 0.86 +0.9 437,927 - IAI47_20950 0.86 -0.2 437,930 - IAI47_20950 0.87 +0.7 437,970 + +0.1 437,970 + +0.8 438,028 - +0.4 438,114 - +0.1 438,213 - -0.3 438,213 - -2.1 438,213 - -1.6 438,214 + -0.1 438,215 - +1.1 438,215 - +0.2 438,232 + +0.3 438,233 - -2.0 438,233 - +0.4 438,233 - -0.9 438,252 + -0.0 438,253 - +0.0 438,253 - -1.8 438,253 - -1.2 438,286 - -1.9 438,337 - +1.4 438,337 - -1.3 438,338 + -0.8 438,338 + -0.9 438,338 + -0.8 438,339 - +1.6 438,339 - -0.3 438,339 - +3.2 438,339 - -0.8 438,347 - -0.6 438,393 + -0.1 438,427 - +0.6 438,427 - -1.4 438,433 + -1.3 438,433 + +0.7 438,434 - -0.5 438,437 - +0.7 438,437 - +0.4 438,455 + -0.7 438,482 + +0.1 438,482 + -0.6 438,483 - -0.9 438,483 - -0.6 438,483 - +1.0 438,483 - -0.6 438,650 + IAI47_20955 0.16 +1.0 438,650 + IAI47_20955 0.16 -0.2 438,650 + IAI47_20955 0.16 +1.4 438,650 + IAI47_20955 0.16 -0.6 438,650 + IAI47_20955 0.16 +2.8 438,650 + IAI47_20955 0.16 +0.9 438,650 + IAI47_20955 0.16 -0.9 438,651 - IAI47_20955 0.16 -0.8 438,651 - IAI47_20955 0.16 -0.2 438,651 - IAI47_20955 0.16 +0.8 438,651 - IAI47_20955 0.16 -0.6 438,651 - IAI47_20955 0.16 -1.1 438,661 + IAI47_20955 0.17 +0.4 438,662 - IAI47_20955 0.17 +0.2 438,706 - IAI47_20955 0.19 -0.9 438,714 + IAI47_20955 0.19 +0.1 438,714 + IAI47_20955 0.19 +0.4 438,714 + IAI47_20955 0.19 -2.5 438,715 - IAI47_20955 0.19 +0.6 438,715 - IAI47_20955 0.19 -0.2 438,715 - IAI47_20955 0.19 -0.6 438,715 - IAI47_20955 0.19 -1.9 438,715 - IAI47_20955 0.19 +1.6 438,811 + IAI47_20955 0.25 +0.6 438,811 + IAI47_20955 0.25 -0.7 438,811 + IAI47_20955 0.25 -0.0 438,811 + IAI47_20955 0.25 -0.8 438,875 + IAI47_20955 0.28 -0.4 438,875 + IAI47_20955 0.28 +1.0 438,875 + IAI47_20955 0.28 +0.5 438,875 + IAI47_20955 0.28 -0.5 438,876 - IAI47_20955 0.28 +0.6 438,876 - IAI47_20955 0.28 -0.7 438,876 - IAI47_20955 0.28 +0.7 438,878 + IAI47_20955 0.28 -1.6 438,879 - IAI47_20955 0.28 -0.8 438,926 + IAI47_20955 0.31 +0.9 438,926 + IAI47_20955 0.31 +1.1 438,926 + IAI47_20955 0.31 +3.0 438,926 + IAI47_20955 0.31 -1.0 438,926 + IAI47_20955 0.31 -1.6 438,927 - IAI47_20955 0.31 +1.2 438,927 - IAI47_20955 0.31 +1.1 438,929 + IAI47_20955 0.31 -0.5 438,929 + IAI47_20955 0.31 -1.8 438,929 + IAI47_20955 0.31 -0.2 438,929 + IAI47_20955 0.31 -0.8 438,930 - IAI47_20955 0.31 -0.6 438,930 - IAI47_20955 0.31 +1.1 438,930 - IAI47_20955 0.31 +1.4 438,930 - IAI47_20955 0.31 -0.4 438,937 + IAI47_20955 0.31 +2.4 438,937 + IAI47_20955 0.31 -0.4 438,937 + IAI47_20955 0.31 -0.7 438,938 - IAI47_20955 0.31 +1.6 438,938 - IAI47_20955 0.31 +0.2 438,973 + IAI47_20955 0.33 +0.5 438,973 + IAI47_20955 0.33 -0.5 438,973 + IAI47_20955 0.33 +0.0 438,973 + IAI47_20955 0.33 +0.1 438,974 - IAI47_20955 0.33 +0.2 438,974 - IAI47_20955 0.33 +2.1
Or see this region's nucleotide sequence