Strain Fitness in Pantoea sp. MT58 around IAI47_18360

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,906,139	-				+0.2
3,906,139	-				-0.8
3,906,147	+				+0.9
3,906,147	+				-1.2
3,906,147	+				+0.9
3,906,168	+				-0.1
3,906,168	+				-1.0
3,906,168	+				-1.0
3,906,169	-				+0.5
3,906,169	-				+0.5
3,906,199	-				-1.2
3,906,206	+				+0.4
3,906,227	+				+0.6
3,906,249	+				-0.3
3,906,249	+				+0.6
3,906,249	+				-2.4
3,906,250	-				+0.0
3,906,250	-				-0.1
3,906,250	-				+0.5
3,906,251	+				+1.0
3,906,251	+				-1.2
3,906,251	+				+2.1
3,906,261	+				-0.9
3,906,261	+				-0.2
3,906,262	-				+0.5
3,906,262	-				-1.6
3,906,262	-				+3.6
3,906,262	-				+0.2
3,906,324	+				-0.7
3,906,324	+				-1.5
3,906,324	+				+0.9
3,906,324	+				+0.4
3,906,324	+				-2.1
3,906,324	+				+2.0
3,906,325	-				-0.2
3,906,325	-				-0.0
3,906,325	-				+0.1
3,906,325	-				+0.7
3,906,372	+				-0.3
3,906,372	+				+2.7
3,906,373	-				-0.7
3,906,373	-				+0.9
3,906,373	-				-0.1
3,906,391	-				-1.3
3,906,401	-				+1.0
3,906,413	-				-0.1
3,906,413	-				+0.3
3,906,413	-				-0.5
3,906,471	+		IAI47_18355	0.13	+2.5
3,906,472	-		IAI47_18355	0.13	-0.5
3,906,503	-		IAI47_18355	0.18	-1.8
3,906,541	+		IAI47_18355	0.24	-1.1
3,906,541	+		IAI47_18355	0.24	+1.9
3,906,541	+		IAI47_18355	0.24	-0.3
3,906,541	+		IAI47_18355	0.24	+0.2
3,906,541	+		IAI47_18355	0.24	+0.5
3,906,542	-		IAI47_18355	0.25	-0.8
3,906,542	-		IAI47_18355	0.25	-1.7
3,906,542	-		IAI47_18355	0.25	-1.3
3,906,618	+		IAI47_18355	0.37	+2.4
3,906,618	+		IAI47_18355	0.37	-0.4
3,906,619	-		IAI47_18355	0.37	+0.2
3,906,622	+		IAI47_18355	0.37	-1.0
3,906,623	-		IAI47_18355	0.38	-1.6
3,906,623	-		IAI47_18355	0.38	-1.5
3,906,623	-		IAI47_18355	0.38	-2.5
3,906,632	-		IAI47_18355	0.39	+0.9
3,906,695	+		IAI47_18355	0.49	+0.8
3,906,695	+		IAI47_18355	0.49	-0.7
3,906,696	-		IAI47_18355	0.49	-0.6
3,906,696	-		IAI47_18355	0.49	-1.3
3,906,696	-		IAI47_18355	0.49	+1.7
3,906,696	-		IAI47_18355	0.49	-1.5
3,906,771	+		IAI47_18355	0.61	+0.3
3,906,771	+		IAI47_18355	0.61	-0.4
3,906,771	+		IAI47_18355	0.61	-1.0
3,906,771	+		IAI47_18355	0.61	-1.1
3,906,771	+		IAI47_18355	0.61	-1.6
3,906,771	+		IAI47_18355	0.61	+0.8
3,906,771	+		IAI47_18355	0.61	-0.3
3,906,771	+		IAI47_18355	0.61	-0.4
3,906,771	+		IAI47_18355	0.61	+1.1
3,906,772	-		IAI47_18355	0.61	-1.8
3,906,772	-		IAI47_18355	0.61	-1.3
3,906,772	-		IAI47_18355	0.61	-1.8
3,906,772	-		IAI47_18355	0.61	-1.6
3,906,772	-		IAI47_18355	0.61	+0.2
3,906,772	-		IAI47_18355	0.61	-0.5
3,906,772	-		IAI47_18355	0.61	-0.1
3,906,773	-		IAI47_18355	0.62	-0.2
3,906,877	+		IAI47_18355	0.78	-0.8
3,906,877	+		IAI47_18355	0.78	-2.4
3,906,877	+		IAI47_18355	0.78	+1.1
3,906,877	+		IAI47_18355	0.78	+0.0
3,906,878	-		IAI47_18355	0.78	-1.6
3,906,878	-		IAI47_18355	0.78	-0.9
3,906,880	+		IAI47_18355	0.79	-1.5
3,906,880	+		IAI47_18355	0.79	+0.5
3,906,935	+		IAI47_18355	0.88	-0.1
3,907,001	+				+0.7
3,907,001	+				-0.6
3,907,001	+				-0.3
3,907,012	+				+0.2
3,907,012	+				+1.7
3,907,012	+				+0.2
3,907,012	+				+0.8
3,907,012	+				-1.3
3,907,012	+				-0.0
3,907,012	+				-0.2
3,907,013	-				-0.5
3,907,013	-				+1.7
3,907,013	-				+0.0
3,907,013	-				-1.6
3,907,013	-				+1.2
3,907,013	-				-1.8
3,907,027	-				+0.6
3,907,157	+				+0.5
3,907,157	+				-1.2
3,907,157	+				+0.6
3,907,158	-				-2.1
3,907,185	+				-0.9
3,907,185	+				+0.4
3,907,186	-				+0.9
3,907,186	-				-1.0
3,907,186	-				-0.6
3,907,186	-				-0.2
3,907,186	-				-0.4
3,907,195	+				-1.0
3,907,195	+				+2.1
3,907,195	+				-0.7
3,907,195	+				-0.6
3,907,195	+				-0.1
3,907,195	+				+0.6
3,907,196	-				-0.3
3,907,196	-				+0.7
3,907,196	-				+1.2
3,907,196	-				+1.1
3,907,196	-				-1.7
3,907,228	+		IAI47_18360	0.11	-0.4
3,907,228	+		IAI47_18360	0.11	-0.5
3,907,228	+		IAI47_18360	0.11	-1.4
3,907,229	-		IAI47_18360	0.11	+0.2
3,907,229	-		IAI47_18360	0.11	+1.1
3,907,229	-		IAI47_18360	0.11	+2.1
3,907,229	-		IAI47_18360	0.11	-1.1
3,907,229	-		IAI47_18360	0.11	-2.7
3,907,229	-		IAI47_18360	0.11	-1.3
3,907,257	+		IAI47_18360	0.13	-1.7
3,907,258	-		IAI47_18360	0.13	-1.7
3,907,258	-		IAI47_18360	0.13	-0.1
3,907,306	+		IAI47_18360	0.15	-0.1
3,907,307	-		IAI47_18360	0.15	-0.9
3,907,307	-		IAI47_18360	0.15	+0.0
3,907,307	-		IAI47_18360	0.15	-0.1
3,907,307	-		IAI47_18360	0.15	-0.4
3,907,307	-		IAI47_18360	0.15	-1.2
3,907,379	+		IAI47_18360	0.19	-0.5
3,907,393	+		IAI47_18360	0.20	+1.2
3,907,394	-		IAI47_18360	0.20	-1.6
3,907,427	+		IAI47_18360	0.22	-1.6
3,907,427	+		IAI47_18360	0.22	-0.9
3,907,427	+		IAI47_18360	0.22	-1.5
3,907,428	-		IAI47_18360	0.22	+0.1
3,907,436	+		IAI47_18360	0.22	-0.0
3,907,436	+		IAI47_18360	0.22	-0.7
3,907,436	+		IAI47_18360	0.22	-1.1
3,907,436	+		IAI47_18360	0.22	-0.9
3,907,436	+		IAI47_18360	0.22	-1.4
3,907,436	+		IAI47_18360	0.22	-2.0
3,907,437	-		IAI47_18360	0.23	+1.3
3,907,437	-		IAI47_18360	0.23	+2.9
3,907,483	-		IAI47_18360	0.25	-0.8
3,907,483	-		IAI47_18360	0.25	-2.3
3,907,483	-		IAI47_18360	0.25	-2.1
3,907,517	-		IAI47_18360	0.27	+0.4
3,907,517	-		IAI47_18360	0.27	-1.9
3,907,526	-		IAI47_18360	0.27	+0.6
3,907,526	-		IAI47_18360	0.27	-2.3
3,907,526	-		IAI47_18360	0.27	-0.4
3,907,528	+		IAI47_18360	0.27	+0.9
3,907,528	+		IAI47_18360	0.27	+0.5
3,907,528	+		IAI47_18360	0.27	-0.3
3,907,529	-		IAI47_18360	0.28	+0.5
3,907,529	-		IAI47_18360	0.28	+1.5
3,907,553	-		IAI47_18360	0.29	-1.9
3,907,553	-		IAI47_18360	0.29	+1.2
3,907,553	-		IAI47_18360	0.29	+0.5
3,907,554	+		IAI47_18360	0.29	-1.0
3,907,554	+		IAI47_18360	0.29	+0.9
3,907,554	+		IAI47_18360	0.29	-1.1
3,907,554	+		IAI47_18360	0.29	+0.8
3,907,554	+		IAI47_18360	0.29	+1.2
3,907,554	+		IAI47_18360	0.29	+0.3
3,907,555	-		IAI47_18360	0.29	+0.6
3,907,555	-		IAI47_18360	0.29	-0.4
3,907,555	-		IAI47_18360	0.29	-1.7
3,907,555	-		IAI47_18360	0.29	-0.3
3,907,555	-		IAI47_18360	0.29	-1.3
3,907,555	-		IAI47_18360	0.29	+0.2
3,907,555	-		IAI47_18360	0.29	-1.0
3,907,555	-		IAI47_18360	0.29	+0.4
3,907,555	-		IAI47_18360	0.29	+0.6
3,907,584	+		IAI47_18360	0.31	-0.1
3,907,584	+		IAI47_18360	0.31	-0.1
3,907,584	+		IAI47_18360	0.31	+0.3
3,907,584	+		IAI47_18360	0.31	-1.8
3,907,585	-		IAI47_18360	0.31	-2.3
3,907,585	-		IAI47_18360	0.31	+0.7
3,907,585	-		IAI47_18360	0.31	+0.6
3,907,585	-		IAI47_18360	0.31	+0.7
3,907,585	-		IAI47_18360	0.31	-1.2
3,907,585	-		IAI47_18360	0.31	+0.5
3,907,585	-		IAI47_18360	0.31	-2.1
3,907,588	+		IAI47_18360	0.31	-0.7
3,907,588	+		IAI47_18360	0.31	-1.2
3,907,589	-		IAI47_18360	0.31	+1.6
3,907,626	+		IAI47_18360	0.33	-0.2
3,907,627	-		IAI47_18360	0.33	+1.5
3,907,634	-		IAI47_18360	0.33	-2.3
3,907,651	+		IAI47_18360	0.34	-0.7
3,907,651	+		IAI47_18360	0.34	-2.7
3,907,651	+		IAI47_18360	0.34	+1.8
3,907,652	-		IAI47_18360	0.34	+0.2
3,907,652	-		IAI47_18360	0.34	+0.4
3,907,652	-		IAI47_18360	0.34	-1.7
3,907,652	-		IAI47_18360	0.34	-1.3
3,907,652	-		IAI47_18360	0.34	-1.2
3,907,692	+		IAI47_18360	0.36	+0.7
3,907,693	-		IAI47_18360	0.37	-0.4
3,907,693	-		IAI47_18360	0.37	+0.7
3,907,807	+		IAI47_18360	0.43	-0.1
3,907,807	+		IAI47_18360	0.43	+1.5
3,907,807	+		IAI47_18360	0.43	+1.7
3,907,808	-		IAI47_18360	0.43	-2.5
3,907,808	-		IAI47_18360	0.43	-0.5
3,907,808	-		IAI47_18360	0.43	-0.3
3,907,808	-		IAI47_18360	0.43	+1.5
3,907,808	-		IAI47_18360	0.43	-2.0
3,907,836	+		IAI47_18360	0.44	-0.6
3,907,837	-		IAI47_18360	0.44	-2.7
3,907,837	-		IAI47_18360	0.44	-0.5
3,907,893	+		IAI47_18360	0.47	+0.7
3,907,893	+		IAI47_18360	0.47	+0.4
3,907,894	-		IAI47_18360	0.47	-2.4
3,907,896	+		IAI47_18360	0.48	+0.4
3,907,896	+		IAI47_18360	0.48	+0.7
3,907,896	+		IAI47_18360	0.48	+0.5
3,907,896	+		IAI47_18360	0.48	-1.1
3,907,896	+		IAI47_18360	0.48	-0.4
3,907,897	-		IAI47_18360	0.48	+0.6
3,907,906	+		IAI47_18360	0.48	-1.7
3,907,907	-		IAI47_18360	0.48	+1.7
3,907,907	-		IAI47_18360	0.48	+1.7
3,907,907	-		IAI47_18360	0.48	+0.1
3,907,909	+		IAI47_18360	0.48	-0.8
3,907,910	-		IAI47_18360	0.48	-0.9
3,907,918	+		IAI47_18360	0.49	+0.8
3,907,957	+		IAI47_18360	0.51	+1.9
3,907,958	-		IAI47_18360	0.51	-0.2
3,907,958	-		IAI47_18360	0.51	-1.5
3,908,059	-		IAI47_18360	0.57	+1.4
3,908,130	+		IAI47_18360	0.60	+0.3
3,908,130	+		IAI47_18360	0.60	-0.6
3,908,130	+		IAI47_18360	0.60	+0.2
3,908,130	+		IAI47_18360	0.60	-0.2
3,908,130	+		IAI47_18360	0.60	+1.6
3,908,130	+		IAI47_18360	0.60	+1.4
3,908,131	-		IAI47_18360	0.60	-1.0
3,908,131	-		IAI47_18360	0.60	+0.9
3,908,131	-		IAI47_18360	0.60	+1.7
3,908,134	+		IAI47_18360	0.61	+0.0
3,908,134	+		IAI47_18360	0.61	-0.9
3,908,134	+		IAI47_18360	0.61	-1.7
3,908,134	+		IAI47_18360	0.61	+0.3
3,908,134	+		IAI47_18360	0.61	+0.4
3,908,134	+		IAI47_18360	0.61	-2.3
3,908,134	+		IAI47_18360	0.61	+2.3
3,908,134	+		IAI47_18360	0.61	+0.7
3,908,135	-		IAI47_18360	0.61	-1.8
3,908,135	-		IAI47_18360	0.61	+0.8
3,908,135	-		IAI47_18360	0.61	+1.5
3,908,146	+		IAI47_18360	0.61	-0.5
3,908,147	-		IAI47_18360	0.61	-0.2
3,908,147	-		IAI47_18360	0.61	-1.3
3,908,147	-		IAI47_18360	0.61	+0.5
3,908,166	+		IAI47_18360	0.62	+1.1
3,908,167	-		IAI47_18360	0.62	+0.2
3,908,167	-		IAI47_18360	0.62	+0.9
3,908,191	+		IAI47_18360	0.64	-1.0
3,908,212	-		IAI47_18360	0.65	-0.5
3,908,212	-		IAI47_18360	0.65	-1.3
3,908,221	+		IAI47_18360	0.65	+0.4
3,908,221	+		IAI47_18360	0.65	-1.8
3,908,221	+		IAI47_18360	0.65	+1.6
3,908,221	+		IAI47_18360	0.65	-0.4
3,908,221	+		IAI47_18360	0.65	-0.5
3,908,221	+		IAI47_18360	0.65	-0.5
3,908,221	+		IAI47_18360	0.65	-1.7
3,908,221	+		IAI47_18360	0.65	+1.4
3,908,222	-		IAI47_18360	0.65	-1.0
3,908,222	-		IAI47_18360	0.65	+0.0
3,908,222	-		IAI47_18360	0.65	+0.6
3,908,222	-		IAI47_18360	0.65	+0.9
3,908,222	-		IAI47_18360	0.65	-1.1
3,908,222	-		IAI47_18360	0.65	-0.1
3,908,222	-		IAI47_18360	0.65	-0.8
3,908,222	-		IAI47_18360	0.65	-1.2
3,908,275	+		IAI47_18360	0.68	-2.0
3,908,371	-		IAI47_18360	0.74	-1.2
3,908,371	-		IAI47_18360	0.74	+0.7
3,908,371	-		IAI47_18360	0.74	-0.6
3,908,494	+		IAI47_18360	0.80	-0.2
3,908,494	+		IAI47_18360	0.80	+1.5
3,908,494	+		IAI47_18360	0.80	+0.9
3,908,495	-		IAI47_18360	0.80	+1.7
3,908,495	-		IAI47_18360	0.80	-0.8
3,908,495	-		IAI47_18360	0.80	-0.3
3,908,495	-		IAI47_18360	0.80	+0.2
3,908,496	+		IAI47_18360	0.80	-1.7
3,908,496	+		IAI47_18360	0.80	-1.6
3,908,496	+		IAI47_18360	0.80	+0.9
3,908,496	+		IAI47_18360	0.80	+0.4
3,908,496	+		IAI47_18360	0.80	+1.4
3,908,496	+		IAI47_18360	0.80	+1.7
3,908,496	+		IAI47_18360	0.80	-0.5
3,908,497	-		IAI47_18360	0.80	+1.5
3,908,497	-		IAI47_18360	0.80	+2.5
3,908,497	-		IAI47_18360	0.80	-1.0
3,908,497	-		IAI47_18360	0.80	+0.4
3,908,497	-		IAI47_18360	0.80	-0.8
3,908,497	-		IAI47_18360	0.80	+1.1
3,908,502	-		IAI47_18360	0.81	+0.1
3,908,502	-		IAI47_18360	0.81	+0.4
3,908,502	-		IAI47_18360	0.81	-1.6
3,908,502	-		IAI47_18360	0.81	+0.2
3,908,506	+		IAI47_18360	0.81	-0.3
3,908,506	+		IAI47_18360	0.81	-0.0
3,908,506	+		IAI47_18360	0.81	-1.3
3,908,507	-		IAI47_18360	0.81	+1.1
3,908,574	+		IAI47_18360	0.85	+1.8
3,908,574	+		IAI47_18360	0.85	-2.0
3,908,574	+		IAI47_18360	0.85	-0.3
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