Strain Fitness in Pantoea sp. MT58 around IAI47_18345

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,903,665	+		IAI47_18340	0.11	-0.3
3,903,665	+		IAI47_18340	0.11	+0.0
3,903,665	+		IAI47_18340	0.11	-0.8
3,903,665	+		IAI47_18340	0.11	-1.0
3,903,666	-		IAI47_18340	0.11	+0.7
3,903,756	+		IAI47_18340	0.20	-0.3
3,903,756	+		IAI47_18340	0.20	+0.8
3,903,757	-		IAI47_18340	0.20	-0.4
3,903,757	-		IAI47_18340	0.20	-1.3
3,903,782	+		IAI47_18340	0.23	-0.8
3,903,783	-		IAI47_18340	0.23	+0.7
3,903,783	-		IAI47_18340	0.23	+1.7
3,903,798	-		IAI47_18340	0.24	-0.5
3,903,800	+		IAI47_18340	0.24	-1.5
3,903,800	+		IAI47_18340	0.24	-1.5
3,903,801	-		IAI47_18340	0.24	-1.4
3,903,801	-		IAI47_18340	0.24	-0.6
3,903,801	-		IAI47_18340	0.24	+0.2
3,903,801	-		IAI47_18340	0.24	+0.5
3,903,838	+		IAI47_18340	0.28	-0.4
3,903,838	+		IAI47_18340	0.28	+0.8
3,903,838	+		IAI47_18340	0.28	-1.2
3,903,838	+		IAI47_18340	0.28	+0.2
3,903,838	+		IAI47_18340	0.28	+3.1
3,903,838	+		IAI47_18340	0.28	-1.9
3,903,838	+		IAI47_18340	0.28	-0.5
3,903,838	+		IAI47_18340	0.28	-1.1
3,903,839	-		IAI47_18340	0.28	+0.7
3,903,839	-		IAI47_18340	0.28	+2.4
3,903,839	-		IAI47_18340	0.28	+0.2
3,903,839	-		IAI47_18340	0.28	+0.0
3,903,927	-		IAI47_18340	0.37	+1.4
3,903,970	+		IAI47_18340	0.41	+0.2
3,903,971	-		IAI47_18340	0.42	+0.1
3,904,117	-		IAI47_18340	0.56	+0.2
3,904,117	-		IAI47_18340	0.56	-0.3
3,904,162	+		IAI47_18340	0.61	-0.6
3,904,162	+		IAI47_18340	0.61	+0.4
3,904,163	-		IAI47_18340	0.61	+0.4
3,904,163	-		IAI47_18340	0.61	+0.6
3,904,163	-		IAI47_18340	0.61	-1.4
3,904,163	-		IAI47_18340	0.61	-0.6
3,904,178	+		IAI47_18340	0.62	-0.1
3,904,184	+		IAI47_18340	0.63	-0.6
3,904,189	+		IAI47_18340	0.64	+1.0
3,904,189	+		IAI47_18340	0.64	-0.3
3,904,189	+		IAI47_18340	0.64	-0.7
3,904,190	-		IAI47_18340	0.64	+1.0
3,904,190	-		IAI47_18340	0.64	-0.6
3,904,190	-		IAI47_18340	0.64	+0.8
3,904,213	+		IAI47_18340	0.66	+0.6
3,904,214	-		IAI47_18340	0.66	-0.7
3,904,214	-		IAI47_18340	0.66	+0.4
3,904,214	-		IAI47_18340	0.66	+0.9
3,904,220	+		IAI47_18340	0.67	-2.6
3,904,220	+		IAI47_18340	0.67	+2.6
3,904,327	+		IAI47_18340	0.77	+1.3
3,904,328	-		IAI47_18340	0.78	+1.1
3,904,328	-		IAI47_18340	0.78	-0.6
3,904,342	+		IAI47_18340	0.79	+2.8
3,904,347	+		IAI47_18340	0.79	-0.8
3,904,347	+		IAI47_18340	0.79	+1.2
3,904,347	+		IAI47_18340	0.79	+1.0
3,904,347	+		IAI47_18340	0.79	+0.3
3,904,347	+		IAI47_18340	0.79	+0.8
3,904,347	+		IAI47_18340	0.79	+1.6
3,904,347	+		IAI47_18340	0.79	-3.1
3,904,347	+		IAI47_18340	0.79	+0.3
3,904,347	+		IAI47_18340	0.79	-1.3
3,904,347	+		IAI47_18340	0.79	-0.0
3,904,347	+		IAI47_18340	0.79	-1.5
3,904,347	+		IAI47_18340	0.79	-1.1
3,904,348	-		IAI47_18340	0.80	-0.8
3,904,348	-		IAI47_18340	0.80	-0.7
3,904,348	-		IAI47_18340	0.80	-0.7
3,904,348	-		IAI47_18340	0.80	-0.8
3,904,348	-		IAI47_18340	0.80	+0.6
3,904,348	-		IAI47_18340	0.80	-0.9
3,904,351	+		IAI47_18340	0.80	+0.8
3,904,352	-		IAI47_18340	0.80	+0.4
3,904,391	+		IAI47_18340	0.84	-2.0
3,904,391	+		IAI47_18340	0.84	-1.3
3,904,391	+		IAI47_18340	0.84	+0.3
3,904,391	+		IAI47_18340	0.84	+1.1
3,904,391	+		IAI47_18340	0.84	-1.3
3,904,392	-		IAI47_18340	0.84	-0.7
3,904,417	+		IAI47_18340	0.87	+0.1
3,904,417	+		IAI47_18340	0.87	-1.0
3,904,418	-		IAI47_18340	0.87	-0.2
3,904,437	+		IAI47_18340	0.89	-0.5
3,904,572	-				+0.2
3,904,613	+				-1.8
3,904,613	+				-1.2
3,904,624	+				-2.5
3,904,624	+				+0.9
3,904,624	+				+0.3
3,904,624	+				-1.1
3,904,625	-				+1.8
3,904,625	-				+0.3
3,904,646	+				-1.3
3,904,646	+				+0.6
3,904,647	-				+1.3
3,904,647	-				-1.3
3,904,647	-				+1.6
3,904,647	-				+1.0
3,904,687	+				-1.2
3,904,687	+				-0.4
3,904,687	+				+0.3
3,904,687	+				+0.5
3,904,687	+				-0.2
3,904,687	+				-0.1
3,904,687	+				+0.2
3,904,688	-				+0.3
3,904,688	-				+0.2
3,904,688	-				-0.9
3,904,688	-				-1.0
3,904,688	-				-0.9
3,904,695	+				+0.8
3,904,695	+				+1.3
3,904,696	-				-0.1
3,904,696	-				-1.7
3,904,696	-				-0.3
3,904,696	-				+0.7
3,904,750	-		IAI47_18345	0.14	+0.1
3,904,769	-		IAI47_18345	0.17	+0.8
3,904,781	+		IAI47_18345	0.19	-0.3
3,904,781	+		IAI47_18345	0.19	+0.6
3,904,907	-		IAI47_18345	0.39	+1.1
3,904,907	-		IAI47_18345	0.39	-0.4
3,904,907	-		IAI47_18345	0.39	+1.2
3,904,907	-		IAI47_18345	0.39	-2.2
3,905,009	+		IAI47_18345	0.55	-0.1
3,905,009	+		IAI47_18345	0.55	+0.2
3,905,070	+		IAI47_18345	0.65	-1.3
3,905,071	-		IAI47_18345	0.65	-0.5
3,905,071	-		IAI47_18345	0.65	-0.5
3,905,071	-		IAI47_18345	0.65	+0.9
3,905,094	+		IAI47_18345	0.69	-0.3
3,905,094	+		IAI47_18345	0.69	-0.2
3,905,095	-		IAI47_18345	0.69	-1.8
3,905,095	-		IAI47_18345	0.69	+0.1
3,905,101	+		IAI47_18345	0.70	-1.1
3,905,101	+		IAI47_18345	0.70	-0.7
3,905,101	+		IAI47_18345	0.70	-1.7
3,905,101	+		IAI47_18345	0.70	-2.4
3,905,101	+		IAI47_18345	0.70	-1.1
3,905,101	+		IAI47_18345	0.70	+0.0
3,905,101	+		IAI47_18345	0.70	+0.3
3,905,102	-		IAI47_18345	0.70	-2.1
3,905,102	-		IAI47_18345	0.70	-0.8
3,905,102	-		IAI47_18345	0.70	-0.2
3,905,102	-		IAI47_18345	0.70	-0.8
3,905,102	-		IAI47_18345	0.70	-0.5
3,905,102	-		IAI47_18345	0.70	+0.3
3,905,156	-		IAI47_18345	0.79	+1.9
3,905,190	+		IAI47_18345	0.84	+0.5
3,905,191	-		IAI47_18345	0.85	-1.5
3,905,213	+		IAI47_18345	0.88	+3.0
3,905,213	+		IAI47_18345	0.88	+0.4
3,905,214	-		IAI47_18345	0.88	-1.0
3,905,214	-		IAI47_18345	0.88	-1.7
3,905,242	-				+0.1
3,905,284	+				-1.3
3,905,292	+				+0.2
3,905,360	-				-0.3
3,905,360	-				-0.8
3,905,393	+				+0.1
3,905,393	+				-0.7
3,905,393	+				-1.7
3,905,394	-				-0.7
3,905,394	-				+0.4
3,905,394	-				-1.6
3,905,394	-				+0.4
3,905,394	-				+0.7
3,905,394	-				-2.5
3,905,394	-				-1.0
3,905,394	-				-0.5
3,905,394	-				-1.2
3,905,414	+				-0.3
3,905,414	+				-2.0
3,905,414	+				-1.5
3,905,414	+				+2.2
3,905,414	+				-0.7
3,905,414	+				-0.4
3,905,414	+				+2.1
3,905,414	+				+0.4
3,905,414	+				-0.5
3,905,415	-				+0.2
3,905,415	-				+1.0
3,905,415	-				-0.7
3,905,415	-				-1.8
3,905,415	-				-1.0
3,905,415	-				+1.4
3,905,415	-				+0.7
3,905,415	-				+0.9
3,905,415	-				+0.1
3,905,415	-				+1.9
3,905,415	-				-0.1
3,905,416	+				+0.2
3,905,416	+				+0.2
3,905,416	+				+0.1
3,905,416	+				+0.6
3,905,416	+				+2.2
3,905,416	+				+0.5
3,905,417	-				+0.2
3,905,417	-				+0.2
3,905,417	-				+1.4
3,905,417	-				-1.0
3,905,417	-				+1.6
3,905,417	-				+0.9
3,905,417	-				-0.1
3,905,433	-				-2.0
3,905,451	-		IAI47_18350	0.11	-0.3
3,905,520	+		IAI47_18350	0.20	+1.3
3,905,520	+		IAI47_18350	0.20	-1.3
3,905,520	+		IAI47_18350	0.20	-0.1
3,905,521	-		IAI47_18350	0.20	+0.6
3,905,521	-		IAI47_18350	0.20	+2.0
3,905,521	-		IAI47_18350	0.20	+0.9
3,905,543	+		IAI47_18350	0.23	-0.4
3,905,543	+		IAI47_18350	0.23	+1.5
3,905,543	+		IAI47_18350	0.23	+0.4
3,905,543	+		IAI47_18350	0.23	-0.5
3,905,543	+		IAI47_18350	0.23	-1.4
3,905,544	-		IAI47_18350	0.23	-2.8
3,905,544	-		IAI47_18350	0.23	-0.3
3,905,545	+		IAI47_18350	0.23	-0.2
3,905,546	-		IAI47_18350	0.23	+1.6
3,905,546	-		IAI47_18350	0.23	-0.3
3,905,557	+		IAI47_18350	0.25	+0.7
3,905,557	+		IAI47_18350	0.25	-0.1
3,905,557	+		IAI47_18350	0.25	+0.2
3,905,558	-		IAI47_18350	0.25	+2.2
3,905,583	+		IAI47_18350	0.28	-0.8
3,905,583	+		IAI47_18350	0.28	+1.1
3,905,584	-		IAI47_18350	0.28	+1.5
3,905,614	+		IAI47_18350	0.32	+0.8
3,905,614	+		IAI47_18350	0.32	-1.7
3,905,614	+		IAI47_18350	0.32	-0.4
3,905,614	+		IAI47_18350	0.32	+0.3
3,905,614	+		IAI47_18350	0.32	-0.4
3,905,614	+		IAI47_18350	0.32	+1.7
3,905,614	+		IAI47_18350	0.32	+0.4
3,905,614	+		IAI47_18350	0.32	-0.8
3,905,614	+		IAI47_18350	0.32	-1.3
3,905,614	+		IAI47_18350	0.32	-0.1
3,905,615	-		IAI47_18350	0.32	-1.3
3,905,615	-		IAI47_18350	0.32	-2.1
3,905,615	-		IAI47_18350	0.32	-0.5
3,905,615	-		IAI47_18350	0.32	+0.3
3,905,615	-		IAI47_18350	0.32	-1.4
3,905,615	-		IAI47_18350	0.32	+0.4
3,905,615	-		IAI47_18350	0.32	+1.4
3,905,615	-		IAI47_18350	0.32	-1.2
3,905,615	-		IAI47_18350	0.32	+0.3
3,905,615	-		IAI47_18350	0.32	+0.7
3,905,615	-		IAI47_18350	0.32	+1.2
3,905,615	-		IAI47_18350	0.32	-0.9
3,905,615	-		IAI47_18350	0.32	-1.4
3,905,615	-		IAI47_18350	0.32	+1.0
3,905,615	-		IAI47_18350	0.32	+0.1
3,905,615	-		IAI47_18350	0.32	-2.0
3,905,619	+		IAI47_18350	0.32	-2.6
3,905,619	+		IAI47_18350	0.32	+0.2
3,905,620	-		IAI47_18350	0.32	-0.0
3,905,620	-		IAI47_18350	0.32	+1.1
3,905,620	-		IAI47_18350	0.32	-1.8
3,905,724	+		IAI47_18350	0.45	+1.2
3,905,724	+		IAI47_18350	0.45	-1.9
3,905,724	+		IAI47_18350	0.45	-0.3
3,905,725	-		IAI47_18350	0.45	-0.3
3,905,725	-		IAI47_18350	0.45	-1.8
3,905,738	+		IAI47_18350	0.47	+0.2
3,905,738	+		IAI47_18350	0.47	+0.1
3,905,788	+		IAI47_18350	0.53	+0.6
3,905,788	+		IAI47_18350	0.53	-1.2
3,905,789	-		IAI47_18350	0.53	-0.3
3,905,809	+		IAI47_18350	0.56	-0.4
3,905,829	-		IAI47_18350	0.58	-0.8
3,905,875	+		IAI47_18350	0.64	+1.3
3,905,875	+		IAI47_18350	0.64	+1.3
3,905,876	-		IAI47_18350	0.64	-1.1
3,905,954	+		IAI47_18350	0.74	+1.3
3,905,955	-		IAI47_18350	0.74	-1.3
3,905,955	-		IAI47_18350	0.74	+0.7
3,905,965	+		IAI47_18350	0.75	+1.0
3,905,965	+		IAI47_18350	0.75	-1.2
3,905,966	-		IAI47_18350	0.75	+1.2
3,905,973	-		IAI47_18350	0.76	+2.0
3,905,999	+		IAI47_18350	0.79	-0.8
3,906,139	-				+0.2
3,906,139	-				-0.8
3,906,147	+				+0.9
3,906,147	+				-1.2
3,906,147	+				+0.9
3,906,168	+				-0.1
3,906,168	+				-1.0
3,906,168	+				-1.0
3,906,169	-				+0.5
3,906,169	-				+0.5
3,906,199	-				-1.2
3,906,206	+				+0.4
3,906,227	+				+0.6
3,906,249	+				-0.3
3,906,249	+				+0.6
3,906,249	+				-2.4
3,906,250	-				+0.0
3,906,250	-				-0.1
3,906,250	-				+0.5
3,906,251	+				+1.0
3,906,251	+				-1.2
3,906,251	+				+2.1
3,906,261	+				-0.9
3,906,261	+				-0.2
3,906,262	-				+0.5
3,906,262	-				-1.6
3,906,262	-				+3.6
3,906,262	-				+0.2