Strain Fitness in Pantoea sp. MT58 around IAI47_15220

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,209,369	+		IAI47_15210	0.46	+0.1
3,209,369	+		IAI47_15210	0.46	-1.1
3,209,369	+		IAI47_15210	0.46	-0.3
3,209,369	+		IAI47_15210	0.46	+1.8
3,209,369	+		IAI47_15210	0.46	-0.4
3,209,370	-		IAI47_15210	0.46	+0.5
3,209,370	-		IAI47_15210	0.46	-0.3
3,209,370	-		IAI47_15210	0.46	+2.0
3,209,414	+		IAI47_15210	0.55	-0.3
3,209,449	+		IAI47_15210	0.61	-0.9
3,209,450	-		IAI47_15210	0.61	+3.2
3,209,489	-		IAI47_15210	0.68	+0.6
3,209,489	-		IAI47_15210	0.68	-1.1
3,209,646	-				-0.1
3,209,663	+				+2.3
3,209,663	+				+1.6
3,209,664	-				+0.4
3,209,664	-				+1.7
3,209,664	-				+1.2
3,209,664	-				-0.6
3,209,679	+				+5.7
3,209,740	+		IAI47_15215	0.11	+0.5
3,209,740	+		IAI47_15215	0.11	+0.3
3,209,793	+		IAI47_15215	0.19	-0.6
3,209,793	+		IAI47_15215	0.19	+0.6
3,209,793	+		IAI47_15215	0.19	+0.3
3,209,793	+		IAI47_15215	0.19	+2.8
3,209,793	+		IAI47_15215	0.19	-0.8
3,209,793	+		IAI47_15215	0.19	-1.0
3,209,793	+		IAI47_15215	0.19	+0.3
3,209,844	+		IAI47_15215	0.27	-0.2
3,209,913	+		IAI47_15215	0.37	-1.2
3,209,913	+		IAI47_15215	0.37	-1.2
3,209,913	+		IAI47_15215	0.37	-0.0
3,209,913	+		IAI47_15215	0.37	+1.8
3,209,913	+		IAI47_15215	0.37	-1.4
3,209,914	-		IAI47_15215	0.37	+4.2
3,209,914	-		IAI47_15215	0.37	-0.1
3,209,914	-		IAI47_15215	0.37	+1.8
3,209,914	-		IAI47_15215	0.37	-0.1
3,209,914	-		IAI47_15215	0.37	+1.0
3,209,916	+		IAI47_15215	0.37	-0.9
3,209,916	+		IAI47_15215	0.37	-0.7
3,209,916	+		IAI47_15215	0.37	+0.1
3,209,917	-		IAI47_15215	0.37	+0.4
3,209,917	-		IAI47_15215	0.37	-0.8
3,209,917	-		IAI47_15215	0.37	+1.0
3,209,917	-		IAI47_15215	0.37	+1.6
3,209,917	-		IAI47_15215	0.37	+0.1
3,209,917	-		IAI47_15215	0.37	+0.8
3,209,917	-		IAI47_15215	0.37	-0.3
3,209,917	-		IAI47_15215	0.37	-1.1
3,209,941	+		IAI47_15215	0.41	+1.8
3,209,941	+		IAI47_15215	0.41	+2.6
3,209,975	+		IAI47_15215	0.46	+0.2
3,209,975	+		IAI47_15215	0.46	-0.7
3,209,976	-		IAI47_15215	0.46	-0.2
3,209,977	+		IAI47_15215	0.46	-0.7
3,209,977	+		IAI47_15215	0.46	-1.2
3,209,977	+		IAI47_15215	0.46	-0.3
3,209,977	+		IAI47_15215	0.46	+0.1
3,209,977	+		IAI47_15215	0.46	-1.5
3,209,977	+		IAI47_15215	0.46	+0.9
3,209,977	+		IAI47_15215	0.46	-0.9
3,209,977	+		IAI47_15215	0.46	-0.8
3,209,977	+		IAI47_15215	0.46	+0.6
3,209,977	+		IAI47_15215	0.46	-0.2
3,209,977	+		IAI47_15215	0.46	-1.2
3,209,978	-		IAI47_15215	0.46	-1.5
3,209,978	-		IAI47_15215	0.46	-1.3
3,209,978	-		IAI47_15215	0.46	+0.6
3,209,978	-		IAI47_15215	0.46	+0.3
3,209,978	-		IAI47_15215	0.46	+0.2
3,209,978	-		IAI47_15215	0.46	-1.2
3,209,978	-		IAI47_15215	0.46	+0.5
3,209,978	-		IAI47_15215	0.46	+0.3
3,209,978	-		IAI47_15215	0.46	-0.2
3,209,978	-		IAI47_15215	0.46	-1.6
3,209,978	-		IAI47_15215	0.46	-1.3
3,209,978	-		IAI47_15215	0.46	+0.2
3,209,978	-		IAI47_15215	0.46	-0.1
3,209,978	-		IAI47_15215	0.46	-0.6
3,209,981	+		IAI47_15215	0.47	-1.4
3,209,981	+		IAI47_15215	0.47	-0.8
3,209,981	+		IAI47_15215	0.47	+0.2
3,209,981	+		IAI47_15215	0.47	+0.2
3,209,981	+		IAI47_15215	0.47	+1.0
3,209,981	+		IAI47_15215	0.47	+0.6
3,209,981	+		IAI47_15215	0.47	-0.5
3,209,981	+		IAI47_15215	0.47	+0.9
3,209,981	+		IAI47_15215	0.47	+0.8
3,209,982	-		IAI47_15215	0.47	-1.2
3,209,982	-		IAI47_15215	0.47	-0.3
3,209,982	-		IAI47_15215	0.47	-0.2
3,209,982	-		IAI47_15215	0.47	+3.1
3,209,982	-		IAI47_15215	0.47	-0.0
3,209,982	-		IAI47_15215	0.47	-0.1
3,209,982	-		IAI47_15215	0.47	-1.4
3,209,982	-		IAI47_15215	0.47	-0.8
3,209,982	-		IAI47_15215	0.47	+0.1
3,209,982	-		IAI47_15215	0.47	-1.6
3,209,982	-		IAI47_15215	0.47	+1.0
3,209,982	-		IAI47_15215	0.47	-0.6
3,209,982	-		IAI47_15215	0.47	+2.1
3,209,982	-		IAI47_15215	0.47	+1.6
3,210,035	+		IAI47_15215	0.55	-0.8
3,210,035	+		IAI47_15215	0.55	-1.3
3,210,036	-		IAI47_15215	0.55	+0.8
3,210,049	-		IAI47_15215	0.57	+0.0
3,210,066	-		IAI47_15215	0.59	-0.7
3,210,066	-		IAI47_15215	0.59	+1.8
3,210,129	+		IAI47_15215	0.68	-1.5
3,210,130	-		IAI47_15215	0.68	+0.9
3,210,130	-		IAI47_15215	0.68	+2.4
3,210,144	+		IAI47_15215	0.70	-1.6
3,210,285	+				+0.9
3,210,285	+				-1.1
3,210,285	+				+0.6
3,210,285	+				-1.4
3,210,285	+				+0.0
3,210,285	+				+1.8
3,210,285	+				+0.9
3,210,286	-				+0.0
3,210,286	-				+0.0
3,210,286	-				-1.3
3,210,286	-				-1.1
3,210,286	-				-1.8
3,210,286	-				+0.4
3,210,286	-				-2.1
3,210,286	-				-2.1
3,210,286	-				-1.7
3,210,286	-				-1.7
3,210,286	-				-0.4
3,210,289	+				-0.3
3,210,289	+				-0.6
3,210,289	+				-1.7
3,210,289	+				+0.5
3,210,290	-				-0.5
3,210,290	-				-0.5
3,210,290	-				-0.7
3,210,290	-				+1.4
3,210,309	+				+1.6
3,210,309	+				+1.3
3,210,327	+				+1.0
3,210,328	-				+1.0
3,210,328	-				-0.8
3,210,380	-				-0.6
3,210,385	-				-0.7
3,210,444	+		IAI47_15220	0.17	+3.0
3,210,472	+		IAI47_15220	0.21	+1.3
3,210,496	+		IAI47_15220	0.25	+0.8
3,210,563	+		IAI47_15220	0.36	+2.9
3,210,575	+		IAI47_15220	0.38	-0.2
3,210,575	+		IAI47_15220	0.38	-1.8
3,210,575	+		IAI47_15220	0.38	-0.6
3,210,575	+		IAI47_15220	0.38	-1.0
3,210,575	+		IAI47_15220	0.38	-0.9
3,210,576	-		IAI47_15220	0.38	+0.0
3,210,576	-		IAI47_15220	0.38	-2.2
3,210,576	-		IAI47_15220	0.38	-0.3
3,210,607	+		IAI47_15220	0.43	-1.7
3,210,621	+		IAI47_15220	0.45	+1.0
3,210,622	-		IAI47_15220	0.46	+0.2
3,210,622	-		IAI47_15220	0.46	-0.6
3,210,709	+		IAI47_15220	0.60	+1.9
3,210,709	+		IAI47_15220	0.60	-0.7
3,210,709	+		IAI47_15220	0.60	+0.2
3,210,709	+		IAI47_15220	0.60	-1.2
3,210,710	-		IAI47_15220	0.60	-0.2
3,210,710	-		IAI47_15220	0.60	-1.7
3,210,710	-		IAI47_15220	0.60	-1.1
3,210,747	-		IAI47_15220	0.66	+0.8
3,210,747	-		IAI47_15220	0.66	+2.2
3,210,788	+		IAI47_15220	0.73	+1.8
3,210,789	-		IAI47_15220	0.73	+0.8
3,210,789	-		IAI47_15220	0.73	+0.6
3,210,789	-		IAI47_15220	0.73	-0.4
3,210,815	+		IAI47_15220	0.77	+0.1
3,210,816	-		IAI47_15220	0.77	+1.8
3,210,816	-		IAI47_15220	0.77	+2.0
3,210,869	+		IAI47_15220	0.86	+0.1
3,210,869	+		IAI47_15220	0.86	-1.6
3,210,870	-		IAI47_15220	0.86	-0.7
3,210,870	-		IAI47_15220	0.86	-1.0
3,210,870	-		IAI47_15220	0.86	-0.9
3,210,936	+				+0.3
3,210,936	+				+0.3
3,210,936	+				-0.6
3,210,956	+				-0.2
3,210,956	+				-0.6
3,210,956	+				-0.0
3,210,957	-				+0.0
3,210,957	-				+0.3
3,210,957	-				+1.1
3,210,957	-				-1.8
3,210,957	-				+1.4
3,210,957	-				+0.6
3,210,957	-				-1.6
3,210,957	-				+1.1
3,210,957	-				+1.9
3,210,968	-				-0.2
3,210,968	-				-0.4
3,210,979	+				-0.2
3,210,979	+				+2.5
3,210,980	-				+0.1
3,210,980	-				+0.3
3,211,033	+				+2.5
3,211,034	-				-0.4
3,211,034	-				-0.2
3,211,048	+				+0.7
3,211,048	+				-0.0
3,211,048	+				+0.3
3,211,048	+				+0.2
3,211,048	+				+1.5
3,211,049	-				-1.2
3,211,049	-				-0.2
3,211,063	-				+0.1
3,211,063	-				+1.9
3,211,107	-				-1.0
3,211,120	+				-0.0
3,211,120	+				-0.4
3,211,120	+				+1.1
3,211,120	+				-0.8
3,211,120	+				-0.6
3,211,120	+				-0.2
3,211,120	+				+0.9
3,211,120	+				-1.1
3,211,120	+				+2.8
3,211,120	+				+0.0
3,211,121	-				-0.8
3,211,121	-				-0.0
3,211,121	-				+0.2
3,211,121	-				-0.2
3,211,121	-				-0.0
3,211,121	-				-0.4
3,211,121	-				+0.2
3,211,121	-				-0.8
3,211,121	-				+0.3
3,211,121	-				-1.3
3,211,121	-				+0.8
3,211,121	-				-2.9
3,211,121	-				-0.5
3,211,121	-				+0.4
3,211,121	-				+0.9
3,211,121	-				-0.8
3,211,121	-				+0.0
3,211,121	-				+0.5
3,211,121	-				+1.9
3,211,128	+				+1.6
3,211,128	+				+0.9
3,211,128	+				-0.6
3,211,128	+				-0.5
3,211,128	+				+0.5
3,211,128	+				-0.6
3,211,128	+				+0.0
3,211,129	-				+0.1
3,211,129	-				+1.3
3,211,129	-				+3.2
3,211,129	-				+0.5
3,211,129	-				+6.2
3,211,129	-				-1.3
3,211,129	-				+1.0
3,211,129	-				-0.9
3,211,129	-				-0.3
3,211,129	-				-1.4
3,211,187	+				+0.5
3,211,187	+				+1.1
3,211,215	+				-1.9
3,211,215	+				+0.6
3,211,216	-				+0.2
3,211,216	-				+2.1
3,211,216	-				+2.2
3,211,216	-				+0.0
3,211,216	-				-0.8
3,211,218	+				-0.0
3,211,219	-				-0.6
3,211,230	+				+0.6
3,211,230	+				-0.7
3,211,231	-				+0.4
3,211,231	-				+0.9
3,211,232	+				+0.3
3,211,232	+				-0.6
3,211,232	+				+1.4
3,211,233	-				-1.2
3,211,233	-				-0.2
3,211,233	-				+0.7
3,211,275	+				+1.6
3,211,319	-				-1.1
3,211,319	-				-0.2
3,211,319	-				-0.7
3,211,319	-				-2.0
3,211,329	+				+0.8
3,211,378	+				+0.0
3,211,379	-				-0.2
3,211,379	-				-0.7
3,211,379	-				-0.5
3,211,427	+		IAI47_15225	0.12	+0.0
3,211,428	-		IAI47_15225	0.12	+0.3
3,211,428	-		IAI47_15225	0.12	+1.1
3,211,448	+		IAI47_15225	0.14	+0.5
3,211,449	-		IAI47_15225	0.14	-1.4
3,211,449	-		IAI47_15225	0.14	+1.2
3,211,475	+		IAI47_15225	0.16	-1.0
3,211,476	-		IAI47_15225	0.16	+0.3
3,211,538	+		IAI47_15225	0.21	-0.0
3,211,538	+		IAI47_15225	0.21	-0.3
3,211,538	+		IAI47_15225	0.21	+0.6
3,211,538	+		IAI47_15225	0.21	+0.3
3,211,538	+		IAI47_15225	0.21	+0.0
3,211,538	+		IAI47_15225	0.21	-2.8
3,211,539	-		IAI47_15225	0.22	+2.9
3,211,539	-		IAI47_15225	0.22	-0.8
3,211,539	-		IAI47_15225	0.22	+0.8
3,211,539	-		IAI47_15225	0.22	+1.5
3,211,539	-		IAI47_15225	0.22	+0.5
3,211,545	-		IAI47_15225	0.22	-1.8
3,211,570	+		IAI47_15225	0.24	+2.2
3,211,570	+		IAI47_15225	0.24	+0.4
3,211,571	-		IAI47_15225	0.24	-1.6
3,211,571	-		IAI47_15225	0.24	+0.6
3,211,601	+		IAI47_15225	0.27	-1.4
3,211,601	+		IAI47_15225	0.27	+0.2
3,211,602	-		IAI47_15225	0.27	-0.3
3,211,661	+		IAI47_15225	0.32	-0.0
3,211,662	-		IAI47_15225	0.32	-0.4
3,211,662	-		IAI47_15225	0.32	-0.4
3,211,670	+		IAI47_15225	0.33	+0.8
3,211,670	+		IAI47_15225	0.33	+1.3
3,211,670	+		IAI47_15225	0.33	+0.2
3,211,670	+		IAI47_15225	0.33	-0.6
3,211,670	+		IAI47_15225	0.33	-0.1
3,211,670	+		IAI47_15225	0.33	+0.6
3,211,670	+		IAI47_15225	0.33	-0.2
3,211,671	-		IAI47_15225	0.33	+0.0
3,211,671	-		IAI47_15225	0.33	-0.4
3,211,671	-		IAI47_15225	0.33	+1.2
3,211,671	-		IAI47_15225	0.33	-0.2
3,211,671	-		IAI47_15225	0.33	-0.4
3,211,714	+		IAI47_15225	0.37	-1.0
3,211,715	-		IAI47_15225	0.37	-0.5
3,211,715	-		IAI47_15225	0.37	+0.2
3,211,880	+		IAI47_15225	0.51	+2.5
3,211,880	+		IAI47_15225	0.51	-2.0
3,211,881	-		IAI47_15225	0.51	-0.5
3,211,881	-		IAI47_15225	0.51	+3.2
3,211,901	+		IAI47_15225	0.53	+1.3
3,211,902	-		IAI47_15225	0.53	-2.3