Strain Fitness in Pantoea sp. MT58 around IAI47_15145

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,191,988	+		IAI47_15135	0.88	-1.0
3,191,988	+		IAI47_15135	0.88	+2.6
3,191,988	+		IAI47_15135	0.88	+1.4
3,191,989	-		IAI47_15135	0.88	+0.0
3,191,989	-		IAI47_15135	0.88	+1.7
3,191,989	-		IAI47_15135	0.88	+0.0
3,192,002	+		IAI47_15135	0.89	-0.2
3,192,096	+				+0.6
3,192,096	+				+0.7
3,192,097	-				-1.0
3,192,097	-				+1.3
3,192,097	-				+0.0
3,192,112	+				-0.2
3,192,112	+				-0.3
3,192,112	+				+0.4
3,192,112	+				-1.3
3,192,112	+				+0.1
3,192,112	+				+0.6
3,192,113	-				+0.3
3,192,113	-				-0.5
3,192,113	-				-0.9
3,192,113	-				-0.6
3,192,141	+				-0.6
3,192,141	+				-0.7
3,192,141	+				+0.4
3,192,142	-				+0.6
3,192,142	-				+1.1
3,192,142	-				-0.3
3,192,174	+				-0.2
3,192,175	-				-0.6
3,192,175	-				+0.8
3,192,175	-				+1.1
3,192,175	-				-0.4
3,192,175	-				-0.9
3,192,175	-				-0.1
3,192,180	+				+0.1
3,192,180	+				-1.6
3,192,180	+				-0.3
3,192,181	-				-1.4
3,192,181	-				-2.3
3,192,181	-				-0.4
3,192,181	-				+2.4
3,192,181	-				+1.0
3,192,181	-				+1.4
3,192,181	-				+3.2
3,192,181	-				+3.2
3,192,185	+				-0.6
3,192,186	-				-0.1
3,192,186	-				+0.5
3,192,249	+				+2.5
3,192,249	+				-1.5
3,192,249	+				-1.8
3,192,249	+				-1.4
3,192,249	+				-0.8
3,192,249	+				-0.4
3,192,249	+				-0.6
3,192,249	+				+0.2
3,192,249	+				+0.3
3,192,249	+				-0.7
3,192,249	+				-0.8
3,192,249	+				+1.0
3,192,249	+				-0.0
3,192,250	-				+1.4
3,192,250	-				-0.3
3,192,250	-				-2.2
3,192,250	-				+0.0
3,192,250	-				+0.5
3,192,250	-				+0.4
3,192,250	-				-1.9
3,192,250	-				+1.8
3,192,250	-				+1.0
3,192,250	-				-1.4
3,192,250	-				+0.9
3,192,250	-				-0.9
3,192,251	+				+1.0
3,192,251	+				-1.2
3,192,251	+				-0.6
3,192,251	+				+1.6
3,192,252	-				-0.6
3,192,252	-				+0.0
3,192,267	-				-0.6
3,192,280	+				-1.9
3,192,280	+				-0.3
3,192,281	-				+1.2
3,192,282	+				-2.0
3,192,282	+				+2.6
3,192,282	+				+1.0
3,192,283	-				+0.3
3,192,283	-				+1.4
3,192,283	-				+1.4
3,192,283	-				+0.4
3,192,283	-				+1.3
3,192,283	-				-0.9
3,192,283	-				+1.2
3,192,283	-				+0.6
3,192,283	-				+0.4
3,192,296	-				+0.0
3,192,320	-		IAI47_15140	0.14	-0.9
3,192,342	+		IAI47_15140	0.19	+0.0
3,192,342	+		IAI47_15140	0.19	-0.2
3,192,342	+		IAI47_15140	0.19	+2.1
3,192,342	+		IAI47_15140	0.19	+0.6
3,192,342	+		IAI47_15140	0.19	-1.8
3,192,342	+		IAI47_15140	0.19	-1.1
3,192,342	+		IAI47_15140	0.19	+1.1
3,192,342	+		IAI47_15140	0.19	+0.4
3,192,342	+		IAI47_15140	0.19	+0.3
3,192,343	-		IAI47_15140	0.19	+0.3
3,192,343	-		IAI47_15140	0.19	-1.7
3,192,343	-		IAI47_15140	0.19	+1.0
3,192,343	-		IAI47_15140	0.19	-0.1
3,192,343	-		IAI47_15140	0.19	+0.6
3,192,405	+		IAI47_15140	0.32	+0.6
3,192,406	-		IAI47_15140	0.32	+0.1
3,192,458	+		IAI47_15140	0.44	+0.1
3,192,459	-		IAI47_15140	0.44	-1.4
3,192,464	-		IAI47_15140	0.45	+0.5
3,192,528	+		IAI47_15140	0.59	+0.3
3,192,528	+		IAI47_15140	0.59	-0.7
3,192,529	-		IAI47_15140	0.59	+0.3
3,192,529	-		IAI47_15140	0.59	+2.6
3,192,529	-		IAI47_15140	0.59	-1.6
3,192,563	-		IAI47_15140	0.67	-2.2
3,192,694	+				+0.6
3,192,694	+				-1.6
3,192,694	+				-2.2
3,192,694	+				+1.8
3,192,694	+				-1.4
3,192,695	-				+0.1
3,192,695	-				+1.6
3,192,702	+				-0.6
3,192,715	+				-2.5
3,192,716	-				+1.8
3,192,716	-				-2.8
3,192,716	-				-0.4
3,192,716	-				+0.7
3,192,719	+				-0.3
3,192,719	+				-1.8
3,192,720	-				+0.8
3,192,781	+				-0.8
3,192,781	+				+2.1
3,192,781	+				+0.4
3,192,781	+				+0.4
3,192,782	-				+1.5
3,192,782	-				-2.0
3,192,782	-				-0.5
3,192,782	-				+0.0
3,192,782	-				-0.4
3,192,783	+				+1.8
3,192,783	+				+1.4
3,192,783	+				-1.8
3,192,783	+				-1.3
3,192,783	+				-2.2
3,192,783	+				+3.1
3,192,784	-				-0.7
3,192,784	-				-1.0
3,192,834	+				+1.6
3,192,834	+				-1.3
3,192,834	+				+0.9
3,192,835	-				+0.9
3,192,871	+				-1.7
3,192,871	+				-1.8
3,193,010	+				-0.6
3,193,019	+				-0.9
3,193,020	-				-1.2
3,193,020	-				+0.3
3,193,031	+				+1.5
3,193,031	+				+3.2
3,193,032	-				+0.0
3,193,032	-				-1.5
3,193,032	-				+1.6
3,193,071	+				-0.3
3,193,071	+				-3.4
3,193,071	+				+1.6
3,193,071	+				+0.1
3,193,072	-				-0.1
3,193,072	-				-0.4
3,193,072	-				+0.4
3,193,072	-				-0.7
3,193,072	-				-0.3
3,193,088	+				-0.5
3,193,143	-		IAI47_15145	0.12	-0.7
3,193,143	-		IAI47_15145	0.12	-1.0
3,193,202	+		IAI47_15145	0.16	-1.2
3,193,220	+		IAI47_15145	0.17	-0.6
3,193,253	+		IAI47_15145	0.19	-0.6
3,193,253	+		IAI47_15145	0.19	+1.3
3,193,254	-		IAI47_15145	0.20	-1.4
3,193,497	+		IAI47_15145	0.36	-0.6
3,193,497	+		IAI47_15145	0.36	+0.3
3,193,497	+		IAI47_15145	0.36	-0.2
3,193,497	+		IAI47_15145	0.36	-1.2
3,193,497	+		IAI47_15145	0.36	+0.6
3,193,497	+		IAI47_15145	0.36	-2.8
3,193,497	+		IAI47_15145	0.36	-1.1
3,193,498	-		IAI47_15145	0.36	-2.0
3,193,498	-		IAI47_15145	0.36	-0.1
3,193,498	-		IAI47_15145	0.36	-0.0
3,193,498	-		IAI47_15145	0.36	-0.1
3,193,498	-		IAI47_15145	0.36	+0.1
3,193,499	+		IAI47_15145	0.36	-0.9
3,193,499	+		IAI47_15145	0.36	-0.0
3,193,500	-		IAI47_15145	0.36	-0.8
3,193,625	+		IAI47_15145	0.45	+1.3
3,193,629	+		IAI47_15145	0.45	-0.2
3,193,631	+		IAI47_15145	0.45	+1.1
3,193,724	+		IAI47_15145	0.52	-0.5
3,193,724	+		IAI47_15145	0.52	-2.2
3,193,734	-		IAI47_15145	0.52	+0.3
3,194,010	-		IAI47_15145	0.71	-0.4
3,194,017	+		IAI47_15145	0.72	-2.5
3,194,017	+		IAI47_15145	0.72	-1.4
3,194,017	+		IAI47_15145	0.72	-0.2
3,194,017	+		IAI47_15145	0.72	-2.1
3,194,018	-		IAI47_15145	0.72	+0.0
3,194,018	-		IAI47_15145	0.72	+1.8
3,194,018	-		IAI47_15145	0.72	-0.8
3,194,018	-		IAI47_15145	0.72	-0.2
3,194,020	+		IAI47_15145	0.72	-1.4
3,194,020	+		IAI47_15145	0.72	-0.7
3,194,021	-		IAI47_15145	0.72	+0.7
3,194,021	-		IAI47_15145	0.72	-0.6
3,194,021	-		IAI47_15145	0.72	-0.4
3,194,021	-		IAI47_15145	0.72	+2.4
3,194,021	-		IAI47_15145	0.72	+0.2
3,194,021	-		IAI47_15145	0.72	-1.0
3,194,048	+		IAI47_15145	0.74	-1.6
3,194,048	+		IAI47_15145	0.74	-0.2
3,194,048	+		IAI47_15145	0.74	+1.6
3,194,048	+		IAI47_15145	0.74	+0.7
3,194,049	-		IAI47_15145	0.74	-0.2
3,194,049	-		IAI47_15145	0.74	-0.6
3,194,049	-		IAI47_15145	0.74	+4.2
3,194,088	+		IAI47_15145	0.77	+0.5
3,194,088	+		IAI47_15145	0.77	-0.1
3,194,089	-		IAI47_15145	0.77	+0.1
3,194,089	-		IAI47_15145	0.77	+0.6
3,194,211	+		IAI47_15145	0.85	+0.6
3,194,211	+		IAI47_15145	0.85	+0.1
3,194,211	+		IAI47_15145	0.85	-0.8
3,194,212	-		IAI47_15145	0.85	-0.7
3,194,212	-		IAI47_15145	0.85	+1.0
3,194,212	-		IAI47_15145	0.85	+0.1
3,194,229	-		IAI47_15145	0.86	+1.4
3,194,303	+				-0.4
3,194,303	+				+1.1
3,194,304	-				-0.3
3,194,379	+				+1.9
3,194,380	-				+0.2
3,194,380	-				-1.9
3,194,424	+				+1.3
3,194,472	-				-0.0
3,194,472	-				+0.3
3,194,475	+				+0.3
3,194,475	+				+1.1
3,194,475	+				+0.6
3,194,476	-				+1.0
3,194,476	-				-0.3
3,194,476	-				+0.6
3,194,476	-				+0.2
3,194,494	+				+1.9
3,194,501	-				+0.3
3,194,501	-				-1.3
3,194,509	-				+3.3
3,194,517	+				+1.0
3,194,531	+				-0.3
3,194,531	+				-0.6
3,194,532	-				-0.2
3,194,532	-				+2.6
3,194,539	-				-1.8
3,194,539	-				-3.0
3,194,564	-				-1.5
3,194,566	-				+2.3
3,194,614	-				-0.2
3,194,622	+				+0.1
3,194,623	-				+1.8
3,194,644	+				+2.9
3,194,645	-				-0.4
3,194,648	-				+1.7
3,194,648	-				-0.7
3,194,650	-				+0.6
3,194,650	-				-0.8
3,194,666	+				+0.9
3,194,670	+				-1.8
3,194,671	-				+2.4
3,194,680	+				-0.6
3,194,681	-				+0.3
3,194,691	+				-0.4
3,194,692	-				-0.6
3,194,696	+				+1.3
3,194,708	+				-0.4
3,194,726	+				-1.0
3,194,727	-				-1.6
3,194,755	+				-1.3
3,194,755	+				+1.7
3,194,755	+				-1.7
3,194,769	+				-0.2
3,194,801	+		IAI47_15150	0.12	-0.4
3,194,801	+		IAI47_15150	0.12	-0.1
3,194,802	-		IAI47_15150	0.12	+1.0
3,194,901	+		IAI47_15150	0.24	-2.8
3,194,954	+		IAI47_15150	0.30	+0.4
3,194,955	-		IAI47_15150	0.30	+0.1
3,195,004	+		IAI47_15150	0.36	+1.5
3,195,004	+		IAI47_15150	0.36	+0.4
3,195,005	-		IAI47_15150	0.36	+2.7
3,195,005	-		IAI47_15150	0.36	+0.4
3,195,036	+		IAI47_15150	0.40	+1.5
3,195,036	+		IAI47_15150	0.40	+0.3
3,195,037	-		IAI47_15150	0.40	-1.0
3,195,069	+		IAI47_15150	0.44	-0.5
3,195,069	+		IAI47_15150	0.44	+2.2
3,195,099	+		IAI47_15150	0.48	-1.4
3,195,099	+		IAI47_15150	0.48	-0.8
3,195,100	-		IAI47_15150	0.48	+0.9
3,195,103	-		IAI47_15150	0.48	+0.4
3,195,134	+		IAI47_15150	0.52	-0.1
3,195,135	-		IAI47_15150	0.52	-0.5
3,195,177	+		IAI47_15150	0.57	-1.2
3,195,177	+		IAI47_15150	0.57	+1.1
3,195,185	-		IAI47_15150	0.58	-1.6
3,195,221	+		IAI47_15150	0.62	-0.4
3,195,251	+		IAI47_15150	0.66	-1.6
3,195,251	+		IAI47_15150	0.66	-0.6
3,195,262	+		IAI47_15150	0.67	-1.1
3,195,262	+		IAI47_15150	0.67	-0.1
3,195,262	+		IAI47_15150	0.67	+1.1
3,195,262	+		IAI47_15150	0.67	+0.5
3,195,263	-		IAI47_15150	0.67	-0.7
3,195,263	-		IAI47_15150	0.67	-0.6
3,195,265	-		IAI47_15150	0.67	-0.7
3,195,292	-		IAI47_15150	0.70	-1.2
3,195,306	+		IAI47_15150	0.72	-0.4
3,195,314	+		IAI47_15150	0.73	+0.1
3,195,328	-		IAI47_15150	0.75	-2.4
3,195,328	-		IAI47_15150	0.75	-0.5
3,195,328	-		IAI47_15150	0.75	-1.6
3,195,333	+		IAI47_15150	0.75	+0.7
3,195,336	+		IAI47_15150	0.76	+0.4
3,195,361	+		IAI47_15150	0.79	+0.3
3,195,361	+		IAI47_15150	0.79	-1.2
3,195,364	-		IAI47_15150	0.79	+2.1
3,195,368	+		IAI47_15150	0.79	-0.5
3,195,369	-		IAI47_15150	0.80	-1.0
3,195,399	+		IAI47_15150	0.83	+0.5
3,195,400	-		IAI47_15150	0.83	-0.2
3,195,400	-		IAI47_15150	0.83	-1.8
3,195,401	+		IAI47_15150	0.83	-1.6
3,195,402	-		IAI47_15150	0.84	-0.6