Strain Fitness in Pantoea sp. MT58 around IAI47_10405

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,206,213	+		IAI47_10400	0.73	-1.7
2,206,213	+		IAI47_10400	0.73	-0.3
2,206,245	-		IAI47_10400	0.75	-1.5
2,206,263	-		IAI47_10400	0.76	-0.0
2,206,314	-		IAI47_10400	0.79	+0.2
2,206,355	+		IAI47_10400	0.82	+1.7
2,206,469	+		IAI47_10400	0.90	+0.5
2,206,469	+		IAI47_10400	0.90	+0.3
2,206,469	+		IAI47_10400	0.90	-0.7
2,206,469	+		IAI47_10400	0.90	-0.1
2,206,469	+		IAI47_10400	0.90	-0.8
2,206,469	+		IAI47_10400	0.90	+1.7
2,206,469	+		IAI47_10400	0.90	+0.9
2,206,469	+		IAI47_10400	0.90	-1.4
2,206,469	+		IAI47_10400	0.90	+1.5
2,206,470	-		IAI47_10400	0.90	-2.3
2,206,470	-		IAI47_10400	0.90	-0.4
2,206,470	-		IAI47_10400	0.90	+1.5
2,206,471	-		IAI47_10400	0.90	-0.9
2,206,502	+				-0.7
2,206,502	+				+0.2
2,206,502	+				+0.3
2,206,502	+				-0.2
2,206,502	+				+3.8
2,206,502	+				+1.0
2,206,502	+				+0.7
2,206,502	+				-1.0
2,206,502	+				+1.7
2,206,502	+				-2.2
2,206,502	+				+0.7
2,206,502	+				-0.4
2,206,502	+				-1.3
2,206,503	-				+0.5
2,206,503	-				+1.5
2,206,503	-				+2.1
2,206,503	-				+0.4
2,206,503	-				+1.8
2,206,506	+				+1.3
2,206,506	+				-0.0
2,206,506	+				+0.2
2,206,506	+				-2.4
2,206,506	+				-1.4
2,206,506	+				+0.9
2,206,506	+				-0.1
2,206,506	+				-0.0
2,206,506	+				-0.6
2,206,506	+				-0.9
2,206,507	-				-0.3
2,206,507	-				+2.3
2,206,507	-				+0.4
2,206,507	-				+1.6
2,206,507	-				-0.8
2,206,507	-				-0.3
2,206,507	-				-0.1
2,206,507	-				+0.0
2,206,507	-				+0.7
2,206,507	-				-0.0
2,206,507	-				-0.4
2,206,507	-				-1.5
2,206,507	-				-0.1
2,206,507	-				+1.0
2,206,512	+				+0.4
2,206,574	+				+0.9
2,206,602	+				+1.2
2,206,602	+				-0.7
2,206,602	+				+1.1
2,206,602	+				+0.4
2,206,602	+				-0.1
2,206,603	-				-1.0
2,206,603	-				-1.1
2,206,603	-				-1.1
2,206,605	+				+1.9
2,206,605	+				-0.1
2,206,605	+				-2.0
2,206,606	-				+0.7
2,206,613	+				+1.0
2,206,613	+				-0.5
2,206,620	+				+0.1
2,206,623	+				+3.7
2,206,623	+				-0.6
2,206,623	+				-0.6
2,206,624	-				+1.1
2,206,624	-				+0.7
2,206,624	-				+0.2
2,206,624	-				-0.3
2,206,624	-				-0.0
2,206,624	-				+0.7
2,206,631	+				-1.4
2,206,654	-				+1.4
2,206,706	+				-0.0
2,206,707	-				+0.5
2,206,746	-				+0.9
2,206,749	+				+2.7
2,206,749	+				-0.5
2,206,749	+				-1.6
2,206,749	+				+2.1
2,206,749	+				+1.4
2,206,749	+				-1.1
2,206,749	+				-3.7
2,206,749	+				+1.5
2,206,750	-				+1.1
2,206,750	-				-1.3
2,206,750	-				+0.7
2,206,750	-				+1.5
2,206,750	-				+0.4
2,206,759	+				+0.7
2,206,759	+				+0.7
2,206,794	+				+0.4
2,206,821	-				+1.9
2,206,859	+				-1.4
2,206,859	+				-0.9
2,206,859	+				+0.7
2,206,859	+				+2.3
2,206,859	+				+0.9
2,206,860	-				-0.1
2,206,860	-				+0.1
2,206,860	-				+1.0
2,206,863	-				+1.3
2,206,863	-				-0.1
2,206,863	-				-1.6
2,206,873	-				-0.6
2,206,935	+				-1.6
2,206,935	+				-0.3
2,206,936	-				+1.3
2,206,936	-				-0.2
2,206,936	-				+1.1
2,206,971	-				+0.7
2,206,971	-				+0.2
2,206,971	-				-1.3
2,207,050	+				+0.7
2,207,050	+				+1.1
2,207,050	+				+0.3
2,207,065	+				-1.3
2,207,065	+				-0.3
2,207,065	+				+0.8
2,207,066	-				-0.4
2,207,066	-				+2.1
2,207,066	-				+0.1
2,207,098	+				-2.8
2,207,099	-				-0.3
2,207,101	+				+1.1
2,207,101	+				-1.9
2,207,101	+				-0.3
2,207,102	-				-1.2
2,207,102	-				-0.3
2,207,102	-				+1.9
2,207,102	-				+0.3
2,207,102	-				-0.6
2,207,102	-				-1.1
2,207,105	+				-0.5
2,207,105	+				+1.2
2,207,105	+				-1.8
2,207,105	+				+1.5
2,207,105	+				-1.4
2,207,105	+				-0.1
2,207,106	-				-0.9
2,207,106	-				+0.3
2,207,106	-				-0.3
2,207,106	-				-1.0
2,207,106	-				-0.0
2,207,106	-				+1.5
2,207,106	-				-0.1
2,207,106	-				-1.9
2,207,106	-				+0.4
2,207,106	-				-1.0
2,207,106	-				+0.4
2,207,106	-				-1.7
2,207,106	-				+1.3
2,207,106	-				+0.3
2,207,106	-				+2.1
2,207,172	+				-0.5
2,207,173	-				+1.6
2,207,173	-				+1.2
2,207,181	+				-1.4
2,207,181	+				-1.4
2,207,182	-				-0.0
2,207,245	-				+2.7
2,207,329	+		IAI47_10405	0.25	+0.6
2,207,329	+		IAI47_10405	0.25	-0.3
2,207,330	-		IAI47_10405	0.25	-2.3
2,207,330	-		IAI47_10405	0.25	+0.3
2,207,330	-		IAI47_10405	0.25	-1.6
2,207,363	+		IAI47_10405	0.32	+1.4
2,207,408	+		IAI47_10405	0.42	+0.1
2,207,409	-		IAI47_10405	0.42	+0.3
2,207,409	-		IAI47_10405	0.42	-1.5
2,207,451	+		IAI47_10405	0.51	-1.9
2,207,452	-		IAI47_10405	0.51	+1.2
2,207,452	-		IAI47_10405	0.51	+0.7
2,207,524	+		IAI47_10405	0.67	-1.2
2,207,524	+		IAI47_10405	0.67	-1.8
2,207,524	+		IAI47_10405	0.67	-1.3
2,207,524	+		IAI47_10405	0.67	+1.3
2,207,524	+		IAI47_10405	0.67	-0.3
2,207,525	-		IAI47_10405	0.67	-0.3
2,207,525	-		IAI47_10405	0.67	-0.2
2,207,568	+		IAI47_10405	0.76	+1.0
2,207,568	+		IAI47_10405	0.76	+0.5
2,207,568	+		IAI47_10405	0.76	-0.4
2,207,568	+		IAI47_10405	0.76	+0.5
2,207,568	+		IAI47_10405	0.76	-2.2
2,207,569	-		IAI47_10405	0.76	-0.9
2,207,569	-		IAI47_10405	0.76	-0.7
2,207,569	-		IAI47_10405	0.76	+0.4
2,207,569	-		IAI47_10405	0.76	-0.1
2,207,569	-		IAI47_10405	0.76	+2.3
2,207,569	-		IAI47_10405	0.76	-0.0
2,207,569	-		IAI47_10405	0.76	+1.2
2,207,570	+		IAI47_10405	0.77	+0.4
2,207,571	-		IAI47_10405	0.77	-0.9
2,207,571	-		IAI47_10405	0.77	-1.0
2,207,571	-		IAI47_10405	0.77	-1.0
2,207,589	+		IAI47_10405	0.81	-0.7
2,207,589	+		IAI47_10405	0.81	+1.4
2,207,590	-		IAI47_10405	0.81	+0.4
2,207,590	-		IAI47_10405	0.81	-0.3
2,207,592	+		IAI47_10405	0.81	+1.3
2,207,592	+		IAI47_10405	0.81	+0.1
2,207,592	+		IAI47_10405	0.81	+1.2
2,207,592	+		IAI47_10405	0.81	+0.2
2,207,592	+		IAI47_10405	0.81	+0.3
2,207,592	+		IAI47_10405	0.81	+0.7
2,207,592	+		IAI47_10405	0.81	-0.3
2,207,592	+		IAI47_10405	0.81	-0.3
2,207,593	-		IAI47_10405	0.82	-0.0
2,207,593	-		IAI47_10405	0.82	-0.6
2,207,593	-		IAI47_10405	0.82	-1.7
2,207,593	-		IAI47_10405	0.82	-0.1
2,207,632	+				+0.2
2,207,632	+				+2.8
2,207,632	+				-0.7
2,207,632	+				+0.1
2,207,633	-				+0.1
2,207,633	-				-0.3
2,207,676	+				+1.6
2,207,676	+				-0.9
2,207,719	+				-0.4
2,207,719	+				+0.2
2,207,720	-				+0.1
2,207,863	-		IAI47_10410	0.14	-0.0
2,207,907	+		IAI47_10410	0.19	-2.9
2,207,920	-		IAI47_10410	0.20	-0.8
2,208,002	+		IAI47_10410	0.28	-1.0
2,208,015	+		IAI47_10410	0.30	-2.5
2,208,016	-		IAI47_10410	0.30	+0.7
2,208,016	-		IAI47_10410	0.30	-0.1
2,208,017	+		IAI47_10410	0.30	+0.1
2,208,017	+		IAI47_10410	0.30	+1.1
2,208,017	+		IAI47_10410	0.30	-0.2
2,208,017	+		IAI47_10410	0.30	-0.3
2,208,017	+		IAI47_10410	0.30	+0.2
2,208,017	+		IAI47_10410	0.30	+2.0
2,208,017	+		IAI47_10410	0.30	+0.4
2,208,018	-		IAI47_10410	0.30	-0.5
2,208,018	-		IAI47_10410	0.30	-1.5
2,208,018	-		IAI47_10410	0.30	+1.3
2,208,018	-		IAI47_10410	0.30	+0.4
2,208,066	+		IAI47_10410	0.35	-2.0
2,208,066	+		IAI47_10410	0.35	+0.7
2,208,066	+		IAI47_10410	0.35	+0.1
2,208,066	+		IAI47_10410	0.35	-0.7
2,208,067	-		IAI47_10410	0.35	-0.1
2,208,067	-		IAI47_10410	0.35	-0.3
2,208,067	-		IAI47_10410	0.35	+0.6
2,208,068	+		IAI47_10410	0.35	+1.3
2,208,068	+		IAI47_10410	0.35	-0.6
2,208,068	+		IAI47_10410	0.35	-0.6
2,208,068	+		IAI47_10410	0.35	-0.8
2,208,069	-		IAI47_10410	0.35	-1.7
2,208,069	-		IAI47_10410	0.35	+1.0
2,208,075	+		IAI47_10410	0.36	+1.5
2,208,076	-		IAI47_10410	0.36	-2.4
2,208,076	-		IAI47_10410	0.36	+1.0
2,208,135	+		IAI47_10410	0.42	-1.0
2,208,135	+		IAI47_10410	0.42	+0.5
2,208,136	-		IAI47_10410	0.42	-1.1
2,208,140	+		IAI47_10410	0.42	-2.2
2,208,140	+		IAI47_10410	0.42	-0.1
2,208,140	+		IAI47_10410	0.42	+0.7
2,208,140	+		IAI47_10410	0.42	-2.3
2,208,140	+		IAI47_10410	0.42	+0.1
2,208,141	-		IAI47_10410	0.42	-0.3
2,208,204	+		IAI47_10410	0.49	-1.5
2,208,204	+		IAI47_10410	0.49	-1.3
2,208,204	+		IAI47_10410	0.49	-1.3
2,208,205	-		IAI47_10410	0.49	+2.0
2,208,205	-		IAI47_10410	0.49	-0.7
2,208,270	+		IAI47_10410	0.56	+0.9
2,208,270	+		IAI47_10410	0.56	-1.9
2,208,270	+		IAI47_10410	0.56	-1.9
2,208,270	+		IAI47_10410	0.56	+0.2
2,208,270	+		IAI47_10410	0.56	-0.3
2,208,271	-		IAI47_10410	0.56	-0.7
2,208,271	-		IAI47_10410	0.56	-1.3
2,208,271	-		IAI47_10410	0.56	+0.8
2,208,271	-		IAI47_10410	0.56	+0.4
2,208,271	-		IAI47_10410	0.56	+1.6
2,208,271	-		IAI47_10410	0.56	+3.2
2,208,271	-		IAI47_10410	0.56	-0.7
2,208,272	+		IAI47_10410	0.56	-0.7
2,208,272	+		IAI47_10410	0.56	-0.5
2,208,272	+		IAI47_10410	0.56	+0.7
2,208,273	-		IAI47_10410	0.56	+0.1
2,208,273	-		IAI47_10410	0.56	+1.0
2,208,273	-		IAI47_10410	0.56	+1.3
2,208,288	+		IAI47_10410	0.57	-1.4
2,208,289	-		IAI47_10410	0.57	-0.1
2,208,289	-		IAI47_10410	0.57	+0.2
2,208,314	+		IAI47_10410	0.60	-1.4
2,208,314	+		IAI47_10410	0.60	-0.7
2,208,315	-		IAI47_10410	0.60	-1.7
2,208,352	-		IAI47_10410	0.64	+1.4
2,208,352	-		IAI47_10410	0.64	+0.9
2,208,352	-		IAI47_10410	0.64	-1.0
2,208,352	-		IAI47_10410	0.64	-0.1
2,208,354	+		IAI47_10410	0.64	+0.6
2,208,355	-		IAI47_10410	0.64	-0.0
2,208,355	-		IAI47_10410	0.64	-0.7
2,208,355	-		IAI47_10410	0.64	+0.6
2,208,355	-		IAI47_10410	0.64	-0.1
2,208,355	-		IAI47_10410	0.64	-0.9
2,208,358	-		IAI47_10410	0.64	+1.3
2,208,373	-		IAI47_10410	0.66	-0.4
2,208,495	+		IAI47_10410	0.78	-1.8
2,208,529	-		IAI47_10410	0.82	-0.5
2,208,539	-		IAI47_10410	0.83	+1.6
2,208,598	-		IAI47_10410	0.89	-0.9
2,208,598	-		IAI47_10410	0.89	-0.3
2,208,615	+				-0.6
2,208,615	+				-0.1