Strain Fitness in Pantoea sp. MT58 around IAI47_10390

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,200,951	+		IAI47_10385	0.46	+1.2
2,200,952	-		IAI47_10385	0.46	-0.1
2,200,952	-		IAI47_10385	0.46	+0.3
2,200,955	+		IAI47_10385	0.47	-0.1
2,200,956	-		IAI47_10385	0.47	-1.5
2,200,956	-		IAI47_10385	0.47	+2.4
2,200,956	-		IAI47_10385	0.47	-0.5
2,200,956	-		IAI47_10385	0.47	-0.0
2,200,956	-		IAI47_10385	0.47	+0.1
2,200,956	-		IAI47_10385	0.47	-0.0
2,201,022	+		IAI47_10385	0.51	-1.1
2,201,022	+		IAI47_10385	0.51	-2.1
2,201,022	+		IAI47_10385	0.51	-0.3
2,201,022	+		IAI47_10385	0.51	+0.7
2,201,022	+		IAI47_10385	0.51	+0.3
2,201,022	+		IAI47_10385	0.51	+1.5
2,201,022	+		IAI47_10385	0.51	-0.1
2,201,022	+		IAI47_10385	0.51	+0.5
2,201,022	+		IAI47_10385	0.51	-1.8
2,201,022	+		IAI47_10385	0.51	+1.4
2,201,022	+		IAI47_10385	0.51	-0.9
2,201,022	+		IAI47_10385	0.51	-0.0
2,201,022	+		IAI47_10385	0.51	+2.0
2,201,023	-		IAI47_10385	0.51	+1.7
2,201,023	-		IAI47_10385	0.51	-0.6
2,201,023	-		IAI47_10385	0.51	+0.5
2,201,023	-		IAI47_10385	0.51	-0.4
2,201,023	-		IAI47_10385	0.51	+0.1
2,201,023	-		IAI47_10385	0.51	+1.1
2,201,023	-		IAI47_10385	0.51	-0.4
2,201,023	-		IAI47_10385	0.51	+0.7
2,201,023	-		IAI47_10385	0.51	+1.1
2,201,023	-		IAI47_10385	0.51	-0.5
2,201,027	-		IAI47_10385	0.51	-0.6
2,201,092	+		IAI47_10385	0.56	-0.3
2,201,093	-		IAI47_10385	0.56	-0.8
2,201,093	-		IAI47_10385	0.56	-0.4
2,201,107	-		IAI47_10385	0.57	-0.6
2,201,107	-		IAI47_10385	0.57	-0.5
2,201,119	+		IAI47_10385	0.57	+1.6
2,201,140	+		IAI47_10385	0.59	-0.7
2,201,161	+		IAI47_10385	0.60	+1.1
2,201,161	+		IAI47_10385	0.60	-1.4
2,201,175	+		IAI47_10385	0.61	-0.8
2,201,176	-		IAI47_10385	0.61	+0.4
2,201,176	-		IAI47_10385	0.61	+1.1
2,201,278	+		IAI47_10385	0.68	-1.9
2,201,278	+		IAI47_10385	0.68	-0.0
2,201,279	-		IAI47_10385	0.68	+0.3
2,201,279	-		IAI47_10385	0.68	+1.3
2,201,279	-		IAI47_10385	0.68	-1.0
2,201,279	-		IAI47_10385	0.68	-0.6
2,201,279	-		IAI47_10385	0.68	-1.7
2,201,279	-		IAI47_10385	0.68	-1.2
2,201,340	+		IAI47_10385	0.72	+0.8
2,201,340	+		IAI47_10385	0.72	-0.7
2,201,340	+		IAI47_10385	0.72	+1.1
2,201,366	-		IAI47_10385	0.74	+0.3
2,201,457	+		IAI47_10385	0.80	+0.5
2,201,457	+		IAI47_10385	0.80	-0.7
2,201,457	+		IAI47_10385	0.80	-0.9
2,201,457	+		IAI47_10385	0.80	-1.1
2,201,457	+		IAI47_10385	0.80	-0.2
2,201,457	+		IAI47_10385	0.80	-0.3
2,201,458	-		IAI47_10385	0.80	-0.4
2,201,458	-		IAI47_10385	0.80	-0.8
2,201,458	-		IAI47_10385	0.80	-0.1
2,201,458	-		IAI47_10385	0.80	+0.7
2,201,506	-		IAI47_10385	0.83	-0.5
2,201,509	+		IAI47_10385	0.83	-1.2
2,201,569	+		IAI47_10385	0.87	+1.8
2,201,569	+		IAI47_10385	0.87	-1.4
2,201,569	+		IAI47_10385	0.87	+0.6
2,201,570	-		IAI47_10385	0.87	+0.5
2,201,572	+		IAI47_10385	0.87	-3.1
2,201,572	+		IAI47_10385	0.87	-1.0
2,201,598	+		IAI47_10385	0.89	+0.1
2,201,598	+		IAI47_10385	0.89	+1.1
2,201,598	+		IAI47_10385	0.89	+2.6
2,201,598	+		IAI47_10385	0.89	-0.7
2,201,619	-				-0.9
2,201,619	-				-0.5
2,201,692	+				-1.1
2,201,692	+				-1.0
2,201,692	+				+0.2
2,201,693	-				-0.5
2,201,693	-				+0.0
2,201,725	+				+0.5
2,201,726	-				-0.5
2,201,770	+				-0.9
2,201,770	+				+1.4
2,201,771	-				-1.0
2,201,771	-				-0.1
2,201,825	+				+0.1
2,201,826	-				-0.4
2,201,826	-				+2.2
2,201,828	+				+0.5
2,201,828	+				-0.2
2,201,828	+				+0.7
2,201,828	+				+0.7
2,201,828	+				-0.3
2,201,828	+				-0.4
2,201,828	+				-0.1
2,201,829	-				-1.9
2,201,868	+				-1.8
2,201,868	+				+1.1
2,201,868	+				-0.3
2,201,868	+				-3.4
2,201,868	+				-0.5
2,201,868	+				+0.3
2,201,868	+				-0.1
2,201,869	-				-0.7
2,201,869	-				+1.1
2,201,869	-				+0.6
2,201,869	-				-0.3
2,201,929	-				+0.1
2,201,932	+				+1.3
2,201,932	+				-1.3
2,201,933	-				+1.4
2,201,933	-				-1.3
2,201,933	-				-2.3
2,201,948	-				-0.4
2,201,979	+		IAI47_10390	0.11	-1.3
2,201,979	+		IAI47_10390	0.11	+0.6
2,201,979	+		IAI47_10390	0.11	+1.0
2,201,980	-		IAI47_10390	0.11	+0.6
2,201,980	-		IAI47_10390	0.11	+0.3
2,201,980	-		IAI47_10390	0.11	+0.6
2,201,980	-		IAI47_10390	0.11	+0.3
2,201,980	-		IAI47_10390	0.11	+0.5
2,202,001	-		IAI47_10390	0.14	+2.3
2,202,036	+		IAI47_10390	0.17	-0.3
2,202,036	+		IAI47_10390	0.17	-0.0
2,202,036	+		IAI47_10390	0.17	+0.6
2,202,037	-		IAI47_10390	0.17	-0.7
2,202,037	-		IAI47_10390	0.17	-0.7
2,202,037	-		IAI47_10390	0.17	+0.7
2,202,143	+		IAI47_10390	0.28	+0.2
2,202,143	+		IAI47_10390	0.28	-0.9
2,202,224	-		IAI47_10390	0.36	-0.0
2,202,329	-		IAI47_10390	0.47	+0.6
2,202,415	+		IAI47_10390	0.56	+0.5
2,202,415	+		IAI47_10390	0.56	+1.1
2,202,415	+		IAI47_10390	0.56	+1.4
2,202,416	-		IAI47_10390	0.56	+0.1
2,202,416	-		IAI47_10390	0.56	-1.9
2,202,418	-		IAI47_10390	0.56	-1.1
2,202,418	-		IAI47_10390	0.56	+3.5
2,202,418	-		IAI47_10390	0.56	+1.3
2,202,448	+		IAI47_10390	0.59	-0.7
2,202,448	+		IAI47_10390	0.59	+3.7
2,202,479	-		IAI47_10390	0.62	+1.9
2,202,589	+		IAI47_10390	0.73	+0.5
2,202,590	-		IAI47_10390	0.73	+0.1
2,202,590	-		IAI47_10390	0.73	-0.2
2,202,590	-		IAI47_10390	0.73	+0.5
2,202,674	-		IAI47_10390	0.82	-0.1
2,202,674	-		IAI47_10390	0.82	+1.2
2,202,674	-		IAI47_10390	0.82	+0.8
2,202,802	+				+0.5
2,202,803	-				-0.7
2,202,803	-				-1.4
2,202,803	-				+0.3
2,202,844	+				-1.4
2,202,844	+				+0.7
2,202,844	+				+0.1
2,202,845	-				-1.1
2,202,845	-				-1.4
2,202,845	-				-0.2
2,202,884	+				-1.7
2,202,885	-				+1.2
2,202,885	-				+0.8
2,202,885	-				+1.0
2,202,932	-				+0.2
2,202,939	+				+1.3
2,202,940	-				+1.3
2,202,952	+				-1.8
2,202,953	-				+1.2
2,202,953	-				+0.4
2,202,992	-				-1.9
2,203,029	+				-0.2
2,203,063	-				-1.9
2,203,063	-				+0.3
2,203,064	+				+0.9
2,203,065	-				+0.9
2,203,093	+				+0.0
2,203,094	-				+1.2
2,203,094	-				-0.8
2,203,094	-				+0.8
2,203,094	-				+0.7
2,203,094	-				+1.1
2,203,137	+				+1.4
2,203,138	-				+0.7
2,203,157	+				+1.1
2,203,185	+				+1.0
2,203,195	-				-0.0
2,203,195	-				-1.9
2,203,198	+				+0.2
2,203,198	+				+0.0
2,203,202	+				-1.1
2,203,202	+				-0.0
2,203,203	-				+0.7
2,203,203	-				+0.9
2,203,203	-				-0.9
2,203,203	-				+0.8
2,203,203	-				-1.1
2,203,255	-				-0.1
2,203,290	+				+0.5
2,203,290	+				+2.6
2,203,324	+				+1.4
2,203,346	+				+0.6
2,203,346	+				+1.1
2,203,346	+				-1.5
2,203,346	+				-1.0
2,203,346	+				+1.4
2,203,346	+				-0.1
2,203,346	+				-0.5
2,203,347	-				+1.1
2,203,347	-				+1.1
2,203,347	-				-0.7
2,203,348	+				-1.1
2,203,348	+				-0.3
2,203,348	+				+0.3
2,203,348	+				-0.5
2,203,349	-				+0.1
2,203,349	-				+0.3
2,203,393	+		IAI47_10395	0.10	+2.6
2,203,393	+		IAI47_10395	0.10	-0.8
2,203,393	+		IAI47_10395	0.10	-0.3
2,203,394	-		IAI47_10395	0.10	+0.3
2,203,394	-		IAI47_10395	0.10	+0.8
2,203,394	-		IAI47_10395	0.10	+0.1
2,203,395	+		IAI47_10395	0.11	-0.2
2,203,395	+				+1.3
2,203,395	+		IAI47_10395	0.11	-0.5
2,203,395	+		IAI47_10395	0.11	+1.2
2,203,395	+		IAI47_10395	0.11	+1.6
2,203,395	+		IAI47_10395	0.11	-0.5
2,203,395	+		IAI47_10395	0.11	+1.3
2,203,395	+		IAI47_10395	0.11	+0.6
2,203,395	+		IAI47_10395	0.11	+1.0
2,203,396	-		IAI47_10395	0.11	-0.1
2,203,404	+		IAI47_10395	0.11	-0.5
2,203,494	+		IAI47_10395	0.16	+0.3
2,203,596	+		IAI47_10395	0.22	+0.6
2,203,598	+		IAI47_10395	0.22	+0.3
2,203,598	+		IAI47_10395	0.22	-1.5
2,203,598	+		IAI47_10395	0.22	+0.2
2,203,598	+		IAI47_10395	0.22	+1.7
2,203,598	+		IAI47_10395	0.22	-1.1
2,203,599	-		IAI47_10395	0.22	+0.0
2,203,599	-		IAI47_10395	0.22	-1.9
2,203,599	-		IAI47_10395	0.22	-1.4
2,203,599	-		IAI47_10395	0.22	-2.1
2,203,617	+		IAI47_10395	0.24	-0.5
2,203,617	+		IAI47_10395	0.24	+3.1
2,203,617	+		IAI47_10395	0.24	-0.3
2,203,618	-		IAI47_10395	0.24	+0.7
2,203,618	-		IAI47_10395	0.24	-2.2
2,203,618	-		IAI47_10395	0.24	+1.3
2,203,618	-		IAI47_10395	0.24	+0.8
2,203,652	-				+1.1
2,203,652	-		IAI47_10395	0.26	+0.6
2,203,652	-		IAI47_10395	0.26	+0.1
2,203,660	+		IAI47_10395	0.26	+0.4
2,203,660	+		IAI47_10395	0.26	+0.5
2,203,661	-		IAI47_10395	0.26	+3.3
2,203,661	-		IAI47_10395	0.26	+1.9
2,203,661	-		IAI47_10395	0.26	+0.3
2,203,661	-		IAI47_10395	0.26	+0.1
2,203,663	-		IAI47_10395	0.26	+0.4
2,203,675	+		IAI47_10395	0.27	-0.6
2,203,675	+		IAI47_10395	0.27	+1.2
2,203,676	-		IAI47_10395	0.27	-0.0
2,203,676	-		IAI47_10395	0.27	+1.0
2,203,787	+		IAI47_10395	0.34	+0.7
2,203,809	+		IAI47_10395	0.35	+0.5
2,203,809	+		IAI47_10395	0.35	+0.4
2,203,809	+		IAI47_10395	0.35	-1.1
2,203,809	+		IAI47_10395	0.35	-0.9
2,203,809	+		IAI47_10395	0.35	+3.1
2,203,810	-		IAI47_10395	0.35	+2.1
2,203,842	+		IAI47_10395	0.37	+0.2
2,203,843	-		IAI47_10395	0.37	+0.3
2,203,843	-		IAI47_10395	0.37	+0.7