Strain Fitness in Pantoea sp. MT58 around IAI47_10385

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,199,270	+				-0.4
2,199,271	-				-0.9
2,199,271	-				-1.1
2,199,293	+				-1.7
2,199,293	+				+1.0
2,199,293	+				+0.2
2,199,294	-				+1.1
2,199,294	-				+0.7
2,199,299	+				+1.9
2,199,300	-				-0.3
2,199,318	+				+0.7
2,199,318	+				-2.1
2,199,319	-				-0.6
2,199,319	-				+0.6
2,199,319	-				-0.6
2,199,337	+				-3.1
2,199,337	+				+2.3
2,199,345	-				-0.6
2,199,380	+		IAI47_10380	0.13	-1.6
2,199,380	+		IAI47_10380	0.13	+3.4
2,199,396	+		IAI47_10380	0.15	+0.7
2,199,396	+		IAI47_10380	0.15	+2.5
2,199,397	-		IAI47_10380	0.15	+1.0
2,199,397	-		IAI47_10380	0.15	-2.1
2,199,440	+		IAI47_10380	0.19	+2.3
2,199,441	-		IAI47_10380	0.19	+0.7
2,199,468	+		IAI47_10380	0.22	+0.9
2,199,469	-		IAI47_10380	0.22	+0.4
2,199,502	+		IAI47_10380	0.26	+0.3
2,199,517	+		IAI47_10380	0.27	+1.7
2,199,517	+		IAI47_10380	0.27	-1.1
2,199,518	-		IAI47_10380	0.27	-0.0
2,199,518	-		IAI47_10380	0.27	-0.7
2,199,518	-		IAI47_10380	0.27	+1.9
2,199,579	-		IAI47_10380	0.33	+0.3
2,199,585	-		IAI47_10380	0.34	+0.5
2,199,631	+		IAI47_10380	0.39	-1.6
2,199,632	-		IAI47_10380	0.39	+0.9
2,199,632	-		IAI47_10380	0.39	+2.1
2,199,632	-		IAI47_10380	0.39	+0.0
2,199,632	-		IAI47_10380	0.39	-1.1
2,199,632	-		IAI47_10380	0.39	+1.4
2,199,635	-		IAI47_10380	0.39	-1.5
2,199,635	-		IAI47_10380	0.39	+1.3
2,199,635	-		IAI47_10380	0.39	+0.6
2,199,635	-		IAI47_10380	0.39	+1.0
2,199,761	-		IAI47_10380	0.52	-1.7
2,199,772	+		IAI47_10380	0.53	+0.3
2,199,773	-		IAI47_10380	0.53	+1.2
2,199,787	+		IAI47_10380	0.54	-0.0
2,199,787	+		IAI47_10380	0.54	-0.5
2,199,787	+		IAI47_10380	0.54	-1.8
2,199,787	+		IAI47_10380	0.54	-0.1
2,199,788	-		IAI47_10380	0.55	+1.1
2,199,788	-		IAI47_10380	0.55	-1.8
2,199,788	-		IAI47_10380	0.55	-1.9
2,199,788	-		IAI47_10380	0.55	+0.1
2,199,788	-		IAI47_10380	0.55	+0.7
2,199,788	-		IAI47_10380	0.55	+0.5
2,199,788	-		IAI47_10380	0.55	-1.5
2,199,789	+		IAI47_10380	0.55	+1.3
2,199,789	+		IAI47_10380	0.55	-1.8
2,199,789	+		IAI47_10380	0.55	-0.5
2,199,789	+		IAI47_10380	0.55	+0.5
2,199,790	-		IAI47_10380	0.55	-0.1
2,199,790	-		IAI47_10380	0.55	-0.2
2,199,790	-		IAI47_10380	0.55	-1.2
2,199,790	-		IAI47_10380	0.55	-2.2
2,199,790	-		IAI47_10380	0.55	-1.3
2,199,875	-		IAI47_10380	0.63	+1.3
2,199,937	+		IAI47_10380	0.70	+0.3
2,199,937	+		IAI47_10380	0.70	-0.7
2,199,937	+		IAI47_10380	0.70	+0.7
2,199,937	+		IAI47_10380	0.70	+2.1
2,199,937	+		IAI47_10380	0.70	-1.3
2,199,938	-		IAI47_10380	0.70	-0.9
2,199,938	-		IAI47_10380	0.70	-1.5
2,200,067	+		IAI47_10380	0.83	-1.0
2,200,068	-		IAI47_10380	0.83	+0.2
2,200,068	-		IAI47_10380	0.83	-0.9
2,200,078	+		IAI47_10380	0.84	+0.9
2,200,078	+		IAI47_10380	0.84	-1.1
2,200,078	+		IAI47_10380	0.84	-0.9
2,200,079	-		IAI47_10380	0.84	+2.1
2,200,123	+		IAI47_10380	0.89	+2.0
2,200,123	+		IAI47_10380	0.89	+2.4
2,200,123	+		IAI47_10380	0.89	+0.6
2,200,124	-		IAI47_10380	0.89	+0.0
2,200,124	-		IAI47_10380	0.89	+0.0
2,200,124	-		IAI47_10380	0.89	-1.1
2,200,124	-		IAI47_10380	0.89	-0.2
2,200,139	+				+2.4
2,200,139	+				-1.3
2,200,140	-				-0.4
2,200,175	+				+0.1
2,200,175	+				-0.7
2,200,176	-				+0.2
2,200,210	+				-0.5
2,200,210	+				+1.5
2,200,211	-				+0.1
2,200,211	-				+0.8
2,200,211	-				+1.3
2,200,211	-				-0.0
2,200,222	+				+1.8
2,200,222	+				+1.6
2,200,222	+				-1.4
2,200,222	+				+0.7
2,200,223	-				+1.6
2,200,223	-				-0.6
2,200,223	-				+0.1
2,200,391	+				-0.2
2,200,392	-				-0.9
2,200,440	+		IAI47_10385	0.13	+0.2
2,200,452	+		IAI47_10385	0.13	-0.4
2,200,453	-		IAI47_10385	0.14	+0.4
2,200,516	+		IAI47_10385	0.18	-0.0
2,200,517	-		IAI47_10385	0.18	+0.5
2,200,603	+		IAI47_10385	0.23	+0.9
2,200,603	+		IAI47_10385	0.23	+0.1
2,200,604	-		IAI47_10385	0.23	+0.3
2,200,748	-		IAI47_10385	0.33	-1.8
2,200,951	+		IAI47_10385	0.46	+1.2
2,200,952	-		IAI47_10385	0.46	-0.1
2,200,952	-		IAI47_10385	0.46	+0.3
2,200,955	+		IAI47_10385	0.47	-0.1
2,200,956	-		IAI47_10385	0.47	-1.5
2,200,956	-		IAI47_10385	0.47	+2.4
2,200,956	-		IAI47_10385	0.47	-0.5
2,200,956	-		IAI47_10385	0.47	-0.0
2,200,956	-		IAI47_10385	0.47	+0.1
2,200,956	-		IAI47_10385	0.47	-0.0
2,201,022	+		IAI47_10385	0.51	-1.1
2,201,022	+		IAI47_10385	0.51	-2.1
2,201,022	+		IAI47_10385	0.51	-0.3
2,201,022	+		IAI47_10385	0.51	+0.7
2,201,022	+		IAI47_10385	0.51	+0.3
2,201,022	+		IAI47_10385	0.51	+1.5
2,201,022	+		IAI47_10385	0.51	-0.1
2,201,022	+		IAI47_10385	0.51	+0.5
2,201,022	+		IAI47_10385	0.51	-1.8
2,201,022	+		IAI47_10385	0.51	+1.4
2,201,022	+		IAI47_10385	0.51	-0.9
2,201,022	+		IAI47_10385	0.51	-0.0
2,201,022	+		IAI47_10385	0.51	+2.0
2,201,023	-		IAI47_10385	0.51	+1.7
2,201,023	-		IAI47_10385	0.51	-0.6
2,201,023	-		IAI47_10385	0.51	+0.5
2,201,023	-		IAI47_10385	0.51	-0.4
2,201,023	-		IAI47_10385	0.51	+0.1
2,201,023	-		IAI47_10385	0.51	+1.1
2,201,023	-		IAI47_10385	0.51	-0.4
2,201,023	-		IAI47_10385	0.51	+0.7
2,201,023	-		IAI47_10385	0.51	+1.1
2,201,023	-		IAI47_10385	0.51	-0.5
2,201,027	-		IAI47_10385	0.51	-0.6
2,201,092	+		IAI47_10385	0.56	-0.3
2,201,093	-		IAI47_10385	0.56	-0.8
2,201,093	-		IAI47_10385	0.56	-0.4
2,201,107	-		IAI47_10385	0.57	-0.6
2,201,107	-		IAI47_10385	0.57	-0.5
2,201,119	+		IAI47_10385	0.57	+1.6
2,201,140	+		IAI47_10385	0.59	-0.7
2,201,161	+		IAI47_10385	0.60	+1.1
2,201,161	+		IAI47_10385	0.60	-1.4
2,201,175	+		IAI47_10385	0.61	-0.8
2,201,176	-		IAI47_10385	0.61	+0.4
2,201,176	-		IAI47_10385	0.61	+1.1
2,201,278	+		IAI47_10385	0.68	-1.9
2,201,278	+		IAI47_10385	0.68	-0.0
2,201,279	-		IAI47_10385	0.68	+0.3
2,201,279	-		IAI47_10385	0.68	+1.3
2,201,279	-		IAI47_10385	0.68	-1.0
2,201,279	-		IAI47_10385	0.68	-0.6
2,201,279	-		IAI47_10385	0.68	-1.7
2,201,279	-		IAI47_10385	0.68	-1.2
2,201,340	+		IAI47_10385	0.72	+0.8
2,201,340	+		IAI47_10385	0.72	-0.7
2,201,340	+		IAI47_10385	0.72	+1.1
2,201,366	-		IAI47_10385	0.74	+0.3
2,201,457	+		IAI47_10385	0.80	+0.5
2,201,457	+		IAI47_10385	0.80	-0.7
2,201,457	+		IAI47_10385	0.80	-0.9
2,201,457	+		IAI47_10385	0.80	-1.1
2,201,457	+		IAI47_10385	0.80	-0.2
2,201,457	+		IAI47_10385	0.80	-0.3
2,201,458	-		IAI47_10385	0.80	-0.4
2,201,458	-		IAI47_10385	0.80	-0.8
2,201,458	-		IAI47_10385	0.80	-0.1
2,201,458	-		IAI47_10385	0.80	+0.7
2,201,506	-		IAI47_10385	0.83	-0.5
2,201,509	+		IAI47_10385	0.83	-1.2
2,201,569	+		IAI47_10385	0.87	+1.8
2,201,569	+		IAI47_10385	0.87	-1.4
2,201,569	+		IAI47_10385	0.87	+0.6
2,201,570	-		IAI47_10385	0.87	+0.5
2,201,572	+		IAI47_10385	0.87	-3.1
2,201,572	+		IAI47_10385	0.87	-1.0
2,201,598	+		IAI47_10385	0.89	+0.1
2,201,598	+		IAI47_10385	0.89	+1.1
2,201,598	+		IAI47_10385	0.89	+2.6
2,201,598	+		IAI47_10385	0.89	-0.7
2,201,619	-				-0.9
2,201,619	-				-0.5
2,201,692	+				-1.1
2,201,692	+				-1.0
2,201,692	+				+0.2
2,201,693	-				-0.5
2,201,693	-				+0.0
2,201,725	+				+0.5
2,201,726	-				-0.5
2,201,770	+				-0.9
2,201,770	+				+1.4
2,201,771	-				-1.0
2,201,771	-				-0.1
2,201,825	+				+0.1
2,201,826	-				-0.4
2,201,826	-				+2.2
2,201,828	+				+0.5
2,201,828	+				-0.2
2,201,828	+				+0.7
2,201,828	+				+0.7
2,201,828	+				-0.3
2,201,828	+				-0.4
2,201,828	+				-0.1
2,201,829	-				-1.9
2,201,868	+				-1.8
2,201,868	+				+1.1
2,201,868	+				-0.3
2,201,868	+				-3.4
2,201,868	+				-0.5
2,201,868	+				+0.3
2,201,868	+				-0.1
2,201,869	-				-0.7
2,201,869	-				+1.1
2,201,869	-				+0.6
2,201,869	-				-0.3
2,201,929	-				+0.1
2,201,932	+				+1.3
2,201,932	+				-1.3
2,201,933	-				+1.4
2,201,933	-				-1.3
2,201,933	-				-2.3
2,201,948	-				-0.4
2,201,979	+		IAI47_10390	0.11	-1.3
2,201,979	+		IAI47_10390	0.11	+0.6
2,201,979	+		IAI47_10390	0.11	+1.0
2,201,980	-		IAI47_10390	0.11	+0.6
2,201,980	-		IAI47_10390	0.11	+0.3
2,201,980	-		IAI47_10390	0.11	+0.6
2,201,980	-		IAI47_10390	0.11	+0.3
2,201,980	-		IAI47_10390	0.11	+0.5
2,202,001	-		IAI47_10390	0.14	+2.3
2,202,036	+		IAI47_10390	0.17	-0.3
2,202,036	+		IAI47_10390	0.17	-0.0
2,202,036	+		IAI47_10390	0.17	+0.6
2,202,037	-		IAI47_10390	0.17	-0.7
2,202,037	-		IAI47_10390	0.17	-0.7
2,202,037	-		IAI47_10390	0.17	+0.7
2,202,143	+		IAI47_10390	0.28	+0.2
2,202,143	+		IAI47_10390	0.28	-0.9
2,202,224	-		IAI47_10390	0.36	-0.0
2,202,329	-		IAI47_10390	0.47	+0.6
2,202,415	+		IAI47_10390	0.56	+0.5
2,202,415	+		IAI47_10390	0.56	+1.1
2,202,415	+		IAI47_10390	0.56	+1.4
2,202,416	-		IAI47_10390	0.56	+0.1
2,202,416	-		IAI47_10390	0.56	-1.9
2,202,418	-		IAI47_10390	0.56	-1.1
2,202,418	-		IAI47_10390	0.56	+3.5
2,202,418	-		IAI47_10390	0.56	+1.3
2,202,448	+		IAI47_10390	0.59	-0.7
2,202,448	+		IAI47_10390	0.59	+3.7
2,202,479	-		IAI47_10390	0.62	+1.9
2,202,589	+		IAI47_10390	0.73	+0.5
2,202,590	-		IAI47_10390	0.73	+0.1
2,202,590	-		IAI47_10390	0.73	-0.2
2,202,590	-		IAI47_10390	0.73	+0.5
2,202,674	-		IAI47_10390	0.82	-0.1
2,202,674	-		IAI47_10390	0.82	+1.2
2,202,674	-		IAI47_10390	0.82	+0.8