Strain Fitness in Pantoea sp. MT58 around IAI47_09195

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09190 and IAI47_09195 are separated by 245 nucleotidesIAI47_09195 and IAI47_09200 are separated by 12 nucleotidesIAI47_09200 and IAI47_09205 are separated by 12 nucleotides IAI47_09190: IAI47_09190 - anthranilate synthase component 1, at 1,935,761 to 1,937,326 _09190 IAI47_09195: IAI47_09195 - PHP domain-containing protein, at 1,937,572 to 1,938,489 _09195 IAI47_09200: IAI47_09200 - threonylcarbamoyl-AMP synthase, at 1,938,502 to 1,939,122 _09200 IAI47_09205: IAI47_09205 - serine protease, at 1,939,135 to 1,939,782 _09205 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1936.590 kb on + strand, within IAI47_09190at 1936.591 kb on - strand, within IAI47_09190at 1936.781 kb on + strand, within IAI47_09190at 1936.782 kb on - strand, within IAI47_09190at 1936.782 kb on - strand, within IAI47_09190at 1936.782 kb on - strand, within IAI47_09190at 1936.798 kb on - strand, within IAI47_09190at 1936.798 kb on - strand, within IAI47_09190at 1936.807 kb on - strand, within IAI47_09190at 1936.828 kb on + strand, within IAI47_09190at 1936.828 kb on + strand, within IAI47_09190at 1936.828 kb on + strand, within IAI47_09190at 1936.829 kb on - strand, within IAI47_09190at 1936.829 kb on - strand, within IAI47_09190at 1936.869 kb on + strand, within IAI47_09190at 1936.869 kb on + strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.870 kb on - strand, within IAI47_09190at 1936.921 kb on + strand, within IAI47_09190at 1936.921 kb on + strand, within IAI47_09190at 1936.936 kb on + strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.937 kb on - strand, within IAI47_09190at 1936.969 kb on + strand, within IAI47_09190at 1937.128 kb on + strand, within IAI47_09190at 1937.128 kb on + strand, within IAI47_09190at 1937.129 kb on - strand, within IAI47_09190at 1937.129 kb on - strand, within IAI47_09190at 1937.308 kb on + strandat 1937.309 kb on - strandat 1937.309 kb on - strandat 1937.381 kb on + strandat 1937.382 kb on - strandat 1937.382 kb on - strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.384 kb on + strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.385 kb on - strandat 1937.397 kb on - strandat 1937.427 kb on - strandat 1937.452 kb on + strandat 1937.464 kb on + strandat 1937.464 kb on + strandat 1937.464 kb on + strandat 1937.465 kb on - strandat 1937.465 kb on - strandat 1937.484 kb on - strandat 1937.491 kb on - strandat 1937.560 kb on - strandat 1937.585 kb on + strandat 1937.585 kb on + strandat 1937.588 kb on + strandat 1937.588 kb on + strandat 1937.588 kb on + strandat 1937.591 kb on + strandat 1937.591 kb on + strandat 1937.592 kb on - strandat 1937.592 kb on - strandat 1937.592 kb on - strandat 1937.639 kb on + strandat 1937.640 kb on - strandat 1937.640 kb on - strandat 1937.702 kb on + strand, within IAI47_09195at 1937.702 kb on + strand, within IAI47_09195at 1937.703 kb on - strand, within IAI47_09195at 1937.703 kb on - strand, within IAI47_09195at 1937.721 kb on - strand, within IAI47_09195at 1937.756 kb on + strand, within IAI47_09195at 1937.756 kb on + strand, within IAI47_09195at 1937.756 kb on + strand, within IAI47_09195at 1937.792 kb on + strand, within IAI47_09195at 1937.793 kb on - strand, within IAI47_09195at 1938.022 kb on - strand, within IAI47_09195at 1938.138 kb on + strand, within IAI47_09195at 1938.153 kb on + strand, within IAI47_09195at 1938.154 kb on - strand, within IAI47_09195at 1938.154 kb on - strand, within IAI47_09195at 1938.154 kb on - strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.303 kb on + strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.304 kb on - strand, within IAI47_09195at 1938.328 kb on + strand, within IAI47_09195at 1938.328 kb on + strand, within IAI47_09195at 1938.329 kb on - strand, within IAI47_09195at 1938.339 kb on + strand, within IAI47_09195at 1938.339 kb on + strand, within IAI47_09195at 1938.339 kb on + strand, within IAI47_09195at 1938.340 kb on - strand, within IAI47_09195at 1938.340 kb on - strand, within IAI47_09195at 1938.552 kb on + strandat 1938.553 kb on - strandat 1938.553 kb on - strandat 1938.568 kb on + strand, within IAI47_09200at 1938.595 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.790 kb on + strand, within IAI47_09200at 1938.791 kb on - strand, within IAI47_09200at 1938.791 kb on - strand, within IAI47_09200at 1938.791 kb on - strand, within IAI47_09200at 1938.799 kb on - strand, within IAI47_09200at 1938.799 kb on - strand, within IAI47_09200at 1938.799 kb on - strand, within IAI47_09200at 1938.804 kb on + strand, within IAI47_09200at 1938.804 kb on + strand, within IAI47_09200at 1938.849 kb on + strand, within IAI47_09200at 1938.850 kb on - strand, within IAI47_09200at 1938.850 kb on - strand, within IAI47_09200at 1938.935 kb on + strand, within IAI47_09200at 1938.936 kb on - strand, within IAI47_09200at 1938.936 kb on - strand, within IAI47_09200at 1938.996 kb on + strand, within IAI47_09200at 1938.996 kb on + strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1938.997 kb on - strand, within IAI47_09200at 1939.120 kb on + strandat 1939.121 kb on - strandat 1939.121 kb on - strandat 1939.125 kb on - strandat 1939.125 kb on - strandat 1939.125 kb on - strandat 1939.174 kb on + strandat 1939.174 kb on + strandat 1939.175 kb on - strandat 1939.197 kb on - strandat 1939.204 kb on - strand, within IAI47_09205at 1939.204 kb on - strand, within IAI47_09205at 1939.204 kb on - strand, within IAI47_09205at 1939.204 kb on - strand, within IAI47_09205at 1939.204 kb on - strand, within IAI47_09205at 1939.205 kb on + strand, within IAI47_09205at 1939.206 kb on - strand, within IAI47_09205at 1939.206 kb on - strand, within IAI47_09205at 1939.206 kb on - strand, within IAI47_09205at 1939.206 kb on - strand, within IAI47_09205at 1939.236 kb on + strand, within IAI47_09205at 1939.236 kb on + strand, within IAI47_09205at 1939.237 kb on - strand, within IAI47_09205at 1939.240 kb on - strand, within IAI47_09205at 1939.240 kb on - strand, within IAI47_09205at 1939.240 kb on - strand, within IAI47_09205at 1939.240 kb on - strand, within IAI47_09205at 1939.251 kb on + strand, within IAI47_09205at 1939.252 kb on - strand, within IAI47_09205at 1939.265 kb on + strand, within IAI47_09205at 1939.275 kb on + strand, within IAI47_09205at 1939.285 kb on + strand, within IAI47_09205at 1939.285 kb on + strand, within IAI47_09205at 1939.286 kb on - strand, within IAI47_09205at 1939.290 kb on + strand, within IAI47_09205at 1939.290 kb on + strand, within IAI47_09205at 1939.290 kb on + strand, within IAI47_09205at 1939.290 kb on + strand, within IAI47_09205at 1939.290 kb on + strand, within IAI47_09205at 1939.290 kb on + strand, within IAI47_09205at 1939.291 kb on - strand, within IAI47_09205at 1939.305 kb on - strand, within IAI47_09205at 1939.345 kb on - strand, within IAI47_09205at 1939.359 kb on + strand, within IAI47_09205at 1939.359 kb on + strand, within IAI47_09205at 1939.372 kb on - strand, within IAI47_09205at 1939.372 kb on - strand, within IAI47_09205at 1939.403 kb on - strand, within IAI47_09205at 1939.407 kb on + strand, within IAI47_09205at 1939.440 kb on + strand, within IAI47_09205at 1939.440 kb on + strand, within IAI47_09205at 1939.454 kb on + strand, within IAI47_09205at 1939.454 kb on + strand, within IAI47_09205at 1939.455 kb on - strand, within IAI47_09205at 1939.455 kb on - strand, within IAI47_09205

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,936,590 + IAI47_09190 0.53 +1.6
1,936,591 - IAI47_09190 0.53 +0.3
1,936,781 + IAI47_09190 0.65 +1.5
1,936,782 - IAI47_09190 0.65 +0.8
1,936,782 - IAI47_09190 0.65 +1.2
1,936,782 - IAI47_09190 0.65 +1.3
1,936,798 - IAI47_09190 0.66 -1.6
1,936,798 - IAI47_09190 0.66 +0.2
1,936,807 - IAI47_09190 0.67 +1.5
1,936,828 + IAI47_09190 0.68 -0.7
1,936,828 + IAI47_09190 0.68 +0.7
1,936,828 + IAI47_09190 0.68 +3.3
1,936,829 - IAI47_09190 0.68 +0.2
1,936,829 - IAI47_09190 0.68 -0.6
1,936,869 + IAI47_09190 0.71 +1.1
1,936,869 + IAI47_09190 0.71 +0.3
1,936,870 - IAI47_09190 0.71 +0.9
1,936,870 - IAI47_09190 0.71 -1.9
1,936,870 - IAI47_09190 0.71 -1.1
1,936,870 - IAI47_09190 0.71 -0.9
1,936,921 + IAI47_09190 0.74 +0.2
1,936,921 + IAI47_09190 0.74 -0.0
1,936,936 + IAI47_09190 0.75 +2.3
1,936,937 - IAI47_09190 0.75 -0.8
1,936,937 - IAI47_09190 0.75 -1.6
1,936,937 - IAI47_09190 0.75 +2.0
1,936,937 - IAI47_09190 0.75 +1.1
1,936,969 + IAI47_09190 0.77 +0.0
1,937,128 + IAI47_09190 0.87 +2.3
1,937,128 + IAI47_09190 0.87 -1.7
1,937,129 - IAI47_09190 0.87 +0.9
1,937,129 - IAI47_09190 0.87 +2.5
1,937,308 + +1.1
1,937,309 - +1.0
1,937,309 - +2.3
1,937,381 + -0.6
1,937,382 - +0.8
1,937,382 - +0.2
1,937,384 + +0.3
1,937,384 + -0.1
1,937,384 + +0.0
1,937,384 + -0.4
1,937,384 + +0.2
1,937,385 - +1.8
1,937,385 - -2.9
1,937,385 - +2.3
1,937,385 - -0.6
1,937,385 - +0.0
1,937,397 - +0.7
1,937,427 - -0.7
1,937,452 + -0.3
1,937,464 + +0.3
1,937,464 + -0.6
1,937,464 + -1.3
1,937,465 - -0.9
1,937,465 - +2.9
1,937,484 - -0.8
1,937,491 - +1.1
1,937,560 - +1.2
1,937,585 + -0.2
1,937,585 + -2.1
1,937,588 + +0.5
1,937,588 + +2.1
1,937,588 + -0.3
1,937,591 + -0.9
1,937,591 + +0.5
1,937,592 - -1.6
1,937,592 - -1.8
1,937,592 - +1.6
1,937,639 + -0.3
1,937,640 - -0.6
1,937,640 - -0.4
1,937,702 + IAI47_09195 0.14 -0.6
1,937,702 + IAI47_09195 0.14 +1.6
1,937,703 - IAI47_09195 0.14 +1.7
1,937,703 - IAI47_09195 0.14 -2.0
1,937,721 - IAI47_09195 0.16 -0.2
1,937,756 + IAI47_09195 0.20 +0.9
1,937,756 + IAI47_09195 0.20 +0.8
1,937,756 + IAI47_09195 0.20 -1.9
1,937,792 + IAI47_09195 0.24 +0.3
1,937,793 - IAI47_09195 0.24 -0.7
1,938,022 - IAI47_09195 0.49 +1.4
1,938,138 + IAI47_09195 0.62 -2.3
1,938,153 + IAI47_09195 0.63 +0.2
1,938,154 - IAI47_09195 0.63 -1.4
1,938,154 - IAI47_09195 0.63 +1.1
1,938,154 - IAI47_09195 0.63 -1.8
1,938,303 + IAI47_09195 0.80 -1.4
1,938,303 + IAI47_09195 0.80 +0.0
1,938,303 + IAI47_09195 0.80 +0.3
1,938,303 + IAI47_09195 0.80 +0.7
1,938,303 + IAI47_09195 0.80 +0.7
1,938,303 + IAI47_09195 0.80 +0.4
1,938,303 + IAI47_09195 0.80 +0.4
1,938,304 - IAI47_09195 0.80 +0.3
1,938,304 - IAI47_09195 0.80 +0.7
1,938,304 - IAI47_09195 0.80 +0.3
1,938,304 - IAI47_09195 0.80 -1.1
1,938,304 - IAI47_09195 0.80 -1.0
1,938,304 - IAI47_09195 0.80 +0.0
1,938,328 + IAI47_09195 0.82 -1.2
1,938,328 + IAI47_09195 0.82 +0.5
1,938,329 - IAI47_09195 0.82 +1.3
1,938,339 + IAI47_09195 0.84 -0.8
1,938,339 + IAI47_09195 0.84 +0.2
1,938,339 + IAI47_09195 0.84 -0.3
1,938,340 - IAI47_09195 0.84 +2.0
1,938,340 - IAI47_09195 0.84 -0.6
1,938,552 + +0.2
1,938,553 - +1.7
1,938,553 - +0.7
1,938,568 + IAI47_09200 0.11 +2.3
1,938,595 + IAI47_09200 0.15 -1.7
1,938,790 + IAI47_09200 0.46 +0.9
1,938,790 + IAI47_09200 0.46 +0.6
1,938,790 + IAI47_09200 0.46 +0.4
1,938,790 + IAI47_09200 0.46 +0.5
1,938,790 + IAI47_09200 0.46 +1.1
1,938,790 + IAI47_09200 0.46 +1.3
1,938,790 + IAI47_09200 0.46 +1.6
1,938,790 + IAI47_09200 0.46 -1.0
1,938,790 + IAI47_09200 0.46 -0.6
1,938,790 + IAI47_09200 0.46 -2.6
1,938,791 - IAI47_09200 0.47 -0.9
1,938,791 - IAI47_09200 0.47 -1.4
1,938,791 - IAI47_09200 0.47 +0.3
1,938,799 - IAI47_09200 0.48 +0.0
1,938,799 - IAI47_09200 0.48 -0.2
1,938,799 - IAI47_09200 0.48 -1.0
1,938,804 + IAI47_09200 0.49 +0.3
1,938,804 + IAI47_09200 0.49 +0.3
1,938,849 + IAI47_09200 0.56 -0.4
1,938,850 - IAI47_09200 0.56 +1.7
1,938,850 - IAI47_09200 0.56 +4.5
1,938,935 + IAI47_09200 0.70 -1.0
1,938,936 - IAI47_09200 0.70 +1.3
1,938,936 - IAI47_09200 0.70 +3.3
1,938,996 + IAI47_09200 0.80 +0.1
1,938,996 + IAI47_09200 0.80 -1.7
1,938,997 - IAI47_09200 0.80 -0.6
1,938,997 - IAI47_09200 0.80 -1.3
1,938,997 - IAI47_09200 0.80 -0.7
1,938,997 - IAI47_09200 0.80 +0.0
1,938,997 - IAI47_09200 0.80 -0.2
1,938,997 - IAI47_09200 0.80 +1.2
1,938,997 - IAI47_09200 0.80 -1.3
1,938,997 - IAI47_09200 0.80 -0.1
1,939,120 + -0.6
1,939,121 - +1.1
1,939,121 - +0.1
1,939,125 - -0.8
1,939,125 - +0.9
1,939,125 - -1.8
1,939,174 + +0.1
1,939,174 + -0.5
1,939,175 - -0.5
1,939,197 - +1.8
1,939,204 - IAI47_09205 0.11 +1.1
1,939,204 - IAI47_09205 0.11 +0.6
1,939,204 - IAI47_09205 0.11 +0.5
1,939,204 - IAI47_09205 0.11 -0.0
1,939,204 - IAI47_09205 0.11 -0.0
1,939,205 + IAI47_09205 0.11 -1.5
1,939,206 - IAI47_09205 0.11 -0.5
1,939,206 - IAI47_09205 0.11 -1.8
1,939,206 - IAI47_09205 0.11 -0.9
1,939,206 - IAI47_09205 0.11 -0.3
1,939,236 + IAI47_09205 0.16 -0.4
1,939,236 + IAI47_09205 0.16 +0.7
1,939,237 - IAI47_09205 0.16 +0.3
1,939,240 - IAI47_09205 0.16 -0.1
1,939,240 - IAI47_09205 0.16 +2.6
1,939,240 - IAI47_09205 0.16 +0.7
1,939,240 - IAI47_09205 0.16 +0.2
1,939,251 + IAI47_09205 0.18 +1.0
1,939,252 - IAI47_09205 0.18 -0.1
1,939,265 + IAI47_09205 0.20 -0.7
1,939,275 + IAI47_09205 0.22 -1.7
1,939,285 + IAI47_09205 0.23 -0.2
1,939,285 + IAI47_09205 0.23 +1.2
1,939,286 - IAI47_09205 0.23 -2.8
1,939,290 + IAI47_09205 0.24 -1.7
1,939,290 + IAI47_09205 0.24 +1.1
1,939,290 + IAI47_09205 0.24 -1.0
1,939,290 + IAI47_09205 0.24 -1.1
1,939,290 + IAI47_09205 0.24 +0.7
1,939,290 + IAI47_09205 0.24 +0.4
1,939,291 - IAI47_09205 0.24 +0.2
1,939,305 - IAI47_09205 0.26 -0.2
1,939,345 - IAI47_09205 0.32 -1.6
1,939,359 + IAI47_09205 0.35 -0.5
1,939,359 + IAI47_09205 0.35 -0.0
1,939,372 - IAI47_09205 0.37 -0.1
1,939,372 - IAI47_09205 0.37 +2.1
1,939,403 - IAI47_09205 0.41 -0.3
1,939,407 + IAI47_09205 0.42 -0.5
1,939,440 + IAI47_09205 0.47 +2.0
1,939,440 + IAI47_09205 0.47 +0.3
1,939,454 + IAI47_09205 0.49 +1.0
1,939,454 + IAI47_09205 0.49 +0.4
1,939,455 - IAI47_09205 0.49 +3.8
1,939,455 - IAI47_09205 0.49 -0.5

Or see this region's nucleotide sequence