Strain Fitness in Pantoea sp. MT58 around IAI47_05695

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,190,714	+		IAI47_05675	0.44	+2.6
1,190,714	+		IAI47_05675	0.44	+0.6
1,190,714	+		IAI47_05675	0.44	+1.1
1,190,728	+		IAI47_05675	0.46	-2.1
1,190,729	-		IAI47_05675	0.47	-0.2
1,190,850	+		IAI47_05675	0.72	+1.1
1,190,850	+		IAI47_05675	0.72	-0.5
1,190,850	+		IAI47_05675	0.72	-1.2
1,190,874	+		IAI47_05675	0.77	-0.6
1,190,874	+		IAI47_05675	0.77	+1.0
1,190,875	-		IAI47_05675	0.77	+1.6
1,190,875	-		IAI47_05675	0.77	-1.1
1,190,875	-		IAI47_05675	0.77	+0.9
1,190,928	-		IAI47_05675	0.88	-0.5
1,190,967	+				+0.1
1,190,967	+				+0.0
1,190,967	+				+0.6
1,190,967	+				-1.6
1,190,968	-				+0.1
1,190,968	-				-0.5
1,190,968	-				-0.5
1,190,968	-				-0.2
1,190,968	-				+1.8
1,190,968	-				+1.4
1,190,968	-				+0.1
1,190,973	+				-1.0
1,190,973	+				-0.1
1,190,973	+				+0.5
1,190,973	+				-0.4
1,190,973	+				+0.6
1,190,973	+				+1.2
1,190,973	+				-0.3
1,190,973	+				+0.7
1,190,973	+				+1.1
1,190,973	+				+2.0
1,190,973	+				+0.1
1,190,974	-				-0.9
1,190,974	-				+0.0
1,190,974	-				-0.3
1,190,974	-				+0.7
1,190,974	-				-1.4
1,190,974	-				+0.3
1,190,974	-				+1.2
1,190,974	-				+0.8
1,190,984	+				-1.4
1,190,984	+				+1.2
1,190,984	+				-0.5
1,190,984	+				-0.7
1,190,984	+				-0.2
1,190,984	+				+0.6
1,190,985	-				-1.9
1,190,985	-				+1.7
1,190,985	-				-1.1
1,190,985	-				+0.7
1,191,017	-				+0.1
1,191,032	+				-1.2
1,191,058	+		IAI47_05680	0.13	-1.4
1,191,058	+		IAI47_05680	0.13	+1.5
1,191,058	+		IAI47_05680	0.13	+1.4
1,191,058	+		IAI47_05680	0.13	+1.9
1,191,058	+		IAI47_05680	0.13	-2.5
1,191,058	+		IAI47_05680	0.13	-0.1
1,191,058	+		IAI47_05680	0.13	+0.1
1,191,058	+		IAI47_05680	0.13	+1.1
1,191,058	+		IAI47_05680	0.13	-1.2
1,191,059	-		IAI47_05680	0.14	-0.7
1,191,059	-		IAI47_05680	0.14	+2.2
1,191,059	-		IAI47_05680	0.14	-1.2
1,191,060	+		IAI47_05680	0.14	-1.0
1,191,060	+		IAI47_05680	0.14	-2.0
1,191,060	+		IAI47_05680	0.14	+0.5
1,191,060	+		IAI47_05680	0.14	+0.6
1,191,061	-		IAI47_05680	0.15	+0.3
1,191,063	-		IAI47_05680	0.16	+1.5
1,191,138	-		IAI47_05680	0.53	-0.1
1,191,140	+		IAI47_05680	0.54	-2.1
1,191,140	+		IAI47_05680	0.54	+0.4
1,191,141	-		IAI47_05680	0.55	-0.3
1,191,141	-		IAI47_05680	0.55	-2.4
1,191,141	-		IAI47_05680	0.55	+0.7
1,191,179	+		IAI47_05680	0.74	-0.8
1,191,211	+		IAI47_05680	0.90	-1.5
1,191,212	-				+1.0
1,191,214	+				+2.6
1,191,214	+				-0.1
1,191,214	+				+1.0
1,191,214	+				-0.4
1,191,215	-				-0.5
1,191,237	+				-1.4
1,191,237	+				-0.9
1,191,237	+				+0.0
1,191,237	+				+1.2
1,191,237	+				-1.0
1,191,238	-				-0.6
1,191,238	-				-1.2
1,191,238	-				-0.7
1,191,262	+		IAI47_05685	0.15	+0.6
1,191,262	+		IAI47_05685	0.15	+0.5
1,191,262	+		IAI47_05685	0.15	-0.9
1,191,262	+		IAI47_05685	0.15	-0.8
1,191,262	+		IAI47_05685	0.15	+1.3
1,191,263	-		IAI47_05685	0.16	-1.3
1,191,263	-		IAI47_05685	0.16	+0.7
1,191,263	-		IAI47_05685	0.16	+0.2
1,191,263	-		IAI47_05685	0.16	+1.0
1,191,263	-		IAI47_05685	0.16	-0.5
1,191,265	+		IAI47_05685	0.16	+0.5
1,191,265	+		IAI47_05685	0.16	+0.1
1,191,265	+		IAI47_05685	0.16	+0.1
1,191,265	+		IAI47_05685	0.16	+0.5
1,191,265	+		IAI47_05685	0.16	-0.2
1,191,265	+		IAI47_05685	0.16	+0.9
1,191,265	+		IAI47_05685	0.16	-0.1
1,191,265	-		IAI47_05685	0.16	-0.8
1,191,266	-		IAI47_05685	0.17	-1.0
1,191,266	-		IAI47_05685	0.17	+0.3
1,191,266	-		IAI47_05685	0.17	-1.5
1,191,276	+		IAI47_05685	0.21	+0.4
1,191,276	+		IAI47_05685	0.21	-1.9
1,191,276	+		IAI47_05685	0.21	-0.5
1,191,277	-		IAI47_05685	0.22	+2.1
1,191,277	-		IAI47_05685	0.22	+3.0
1,191,277	-		IAI47_05685	0.22	+0.3
1,191,315	+		IAI47_05685	0.39	-0.1
1,191,316	-		IAI47_05685	0.39	+2.1
1,191,410	+		IAI47_05685	0.81	-1.8
1,191,411	-		IAI47_05685	0.81	+0.0
1,191,426	+		IAI47_05685	0.88	-1.3
1,191,426	+		IAI47_05685	0.88	+0.5
1,191,427	-		IAI47_05685	0.88	+0.0
1,191,473	-		IAI47_05690	0.12	-0.1
1,191,473	-		IAI47_05690	0.12	-0.4
1,191,549	+		IAI47_05690	0.48	-0.8
1,191,550	-		IAI47_05690	0.49	-0.5
1,191,550	-		IAI47_05690	0.49	+1.5
1,191,552	+		IAI47_05690	0.50	+1.7
1,191,552	+		IAI47_05690	0.50	-0.6
1,191,552	+		IAI47_05690	0.50	-0.6
1,191,552	+		IAI47_05690	0.50	-0.4
1,191,553	-		IAI47_05690	0.50	+1.8
1,191,553	-		IAI47_05690	0.50	-1.9
1,191,565	+		IAI47_05690	0.56	+0.9
1,191,641	+				+0.3
1,191,641	+				-2.0
1,191,642	-				+1.3
1,191,642	-				+1.7
1,191,660	+				+1.0
1,191,661	-				-1.1
1,191,661	-				+0.6
1,191,661	-				+1.0
1,191,695	-				+2.3
1,191,695	-				-1.0
1,191,695	-				-1.0
1,191,711	+				-0.4
1,191,712	-				-0.1
1,191,715	+				-1.0
1,191,731	+				+0.3
1,191,731	+				-0.3
1,191,731	+				-1.8
1,191,731	+				+1.2
1,191,732	-				+2.7
1,191,732	-				+0.7
1,191,732	-				+0.7
1,191,733	+				+0.4
1,191,733	+				-1.6
1,191,734	-				-0.1
1,191,749	+				+0.4
1,191,749	+				-1.2
1,191,750	-				-0.1
1,191,750	-				-0.7
1,191,760	-				+0.8
1,191,777	+		IAI47_05695	0.13	-0.3
1,191,777	+		IAI47_05695	0.13	-1.4
1,191,796	+		IAI47_05695	0.17	+0.8
1,191,806	-		IAI47_05695	0.19	+0.3
1,191,806	-		IAI47_05695	0.19	+0.6
1,191,820	+		IAI47_05695	0.22	-0.5
1,191,820	+		IAI47_05695	0.22	+1.4
1,191,821	-		IAI47_05695	0.22	-0.1
1,191,821	-		IAI47_05695	0.22	+0.0
1,191,827	+		IAI47_05695	0.23	+1.6
1,191,827	+		IAI47_05695	0.23	+1.4
1,191,827	+		IAI47_05695	0.23	-1.6
1,191,827	+		IAI47_05695	0.23	+0.2
1,191,827	+		IAI47_05695	0.23	-1.1
1,191,828	-		IAI47_05695	0.23	-1.0
1,191,828	-		IAI47_05695	0.23	+1.3
1,191,828	-		IAI47_05695	0.23	-1.5
1,191,828	-		IAI47_05695	0.23	-0.4
1,191,828	-		IAI47_05695	0.23	+1.0
1,191,831	+		IAI47_05695	0.24	-1.4
1,191,831	+		IAI47_05695	0.24	-0.3
1,191,831	+		IAI47_05695	0.24	-0.6
1,191,831	+		IAI47_05695	0.24	+0.1
1,191,832	-		IAI47_05695	0.24	+0.5
1,191,832	-		IAI47_05695	0.24	+0.3
1,191,832	-		IAI47_05695	0.24	+0.5
1,191,832	-		IAI47_05695	0.24	-1.5
1,191,832	-		IAI47_05695	0.24	+0.1
1,191,832	-		IAI47_05695	0.24	+2.0
1,191,832	-		IAI47_05695	0.24	-1.5
1,191,832	-		IAI47_05695	0.24	-0.9
1,191,855	-		IAI47_05695	0.29	-2.0
1,191,855	-		IAI47_05695	0.29	+0.6
1,191,855	-		IAI47_05695	0.29	-0.6
1,191,855	-		IAI47_05695	0.29	-0.7
1,191,855	-		IAI47_05695	0.29	-1.7
1,191,855	-		IAI47_05695	0.29	+2.1
1,191,866	+		IAI47_05695	0.31	-0.6
1,191,866	+		IAI47_05695	0.31	-0.8
1,191,866	+		IAI47_05695	0.31	-0.6
1,191,867	-		IAI47_05695	0.31	-1.2
1,191,867	-		IAI47_05695	0.31	+0.6
1,191,893	+		IAI47_05695	0.36	+1.2
1,191,893	+		IAI47_05695	0.36	+0.3
1,191,899	+		IAI47_05695	0.37	-1.4
1,191,899	+		IAI47_05695	0.37	+0.4
1,191,899	+		IAI47_05695	0.37	+0.7
1,191,900	-		IAI47_05695	0.37	+0.3
1,191,900	-		IAI47_05695	0.37	-3.0
1,191,900	-		IAI47_05695	0.37	-0.1
1,191,900	-		IAI47_05695	0.37	+0.6
1,191,901	+		IAI47_05695	0.38	-0.8
1,191,901	+		IAI47_05695	0.38	+0.8
1,191,914	+		IAI47_05695	0.40	-0.4
1,191,929	+		IAI47_05695	0.43	+1.4
1,191,930	-		IAI47_05695	0.43	+0.2
1,191,946	-		IAI47_05695	0.47	-2.2
1,191,946	-		IAI47_05695	0.47	-1.0
1,191,946	-		IAI47_05695	0.47	+0.3
1,191,946	-		IAI47_05695	0.47	-1.0
1,191,959	+		IAI47_05695	0.49	-1.4
1,191,959	+		IAI47_05695	0.49	+1.0
1,191,960	-		IAI47_05695	0.49	+2.0
1,191,960	-		IAI47_05695	0.49	-1.0
1,191,960	-		IAI47_05695	0.49	-0.3
1,192,016	+		IAI47_05695	0.60	-2.0
1,192,016	+		IAI47_05695	0.60	-1.0
1,192,016	+		IAI47_05695	0.60	-0.8
1,192,016	+		IAI47_05695	0.60	-2.0
1,192,017	-		IAI47_05695	0.61	-0.2
1,192,017	-		IAI47_05695	0.61	-0.0
1,192,017	-		IAI47_05695	0.61	+0.1
1,192,017	-		IAI47_05695	0.61	+1.0
1,192,017	-		IAI47_05695	0.61	+0.1
1,192,055	+		IAI47_05695	0.68	+0.1
1,192,055	+		IAI47_05695	0.68	-1.8
1,192,056	-		IAI47_05695	0.68	-2.4
1,192,088	+		IAI47_05695	0.75	-0.6
1,192,088	+		IAI47_05695	0.75	-1.0
1,192,088	+		IAI47_05695	0.75	-0.6
1,192,088	+		IAI47_05695	0.75	+0.1
1,192,089	-		IAI47_05695	0.75	-0.4
1,192,089	-		IAI47_05695	0.75	-1.3
1,192,091	+		IAI47_05695	0.75	-1.6
1,192,092	-		IAI47_05695	0.75	-0.7
1,192,092	-		IAI47_05695	0.75	-0.6
1,192,092	-		IAI47_05695	0.75	-0.5
1,192,132	-		IAI47_05695	0.83	-0.9
1,192,132	-		IAI47_05695	0.83	+0.2
1,192,132	-		IAI47_05695	0.83	-1.8
1,192,132	-		IAI47_05695	0.83	-1.4
1,192,132	-		IAI47_05695	0.83	-0.3
1,192,135	+		IAI47_05695	0.84	-1.0
1,192,135	+		IAI47_05695	0.84	-2.0
1,192,135	+		IAI47_05695	0.84	+1.1
1,192,135	+		IAI47_05695	0.84	-0.8
1,192,135	+		IAI47_05695	0.84	-0.9
1,192,135	+		IAI47_05695	0.84	-1.1
1,192,136	-		IAI47_05695	0.84	-0.4
1,192,136	-		IAI47_05695	0.84	+0.6
1,192,136	-		IAI47_05695	0.84	-2.3
1,192,136	-		IAI47_05695	0.84	-0.5
1,192,136	-		IAI47_05695	0.84	+1.3
1,192,140	+		IAI47_05695	0.85	-0.2
1,192,140	+		IAI47_05695	0.85	-0.9
1,192,140	+		IAI47_05695	0.85	-2.3
1,192,140	+		IAI47_05695	0.85	-0.2
1,192,140	+		IAI47_05695	0.85	-0.3
1,192,140	+		IAI47_05695	0.85	-1.3
1,192,140	+		IAI47_05695	0.85	+2.1
1,192,140	+		IAI47_05695	0.85	+0.7
1,192,140	+		IAI47_05695	0.85	-0.5
1,192,141	-		IAI47_05695	0.85	+1.8
1,192,141	-		IAI47_05695	0.85	+0.9
1,192,141	-		IAI47_05695	0.85	+1.1
1,192,141	-		IAI47_05695	0.85	-0.1
1,192,141	-		IAI47_05695	0.85	-0.1
1,192,141	-		IAI47_05695	0.85	-0.4
1,192,141	-		IAI47_05695	0.85	-1.6
1,192,141	-		IAI47_05695	0.85	-0.2
1,192,141	-		IAI47_05695	0.85	+0.7
1,192,141	-		IAI47_05695	0.85	+1.1
1,192,141	-		IAI47_05695	0.85	-0.6
1,192,152	-		IAI47_05695	0.87	-1.5
1,192,163	+		IAI47_05695	0.89	+0.7
1,192,163	+		IAI47_05695	0.89	+0.5
1,192,175	-				+1.2
1,192,175	-				-0.4
1,192,175	-				-1.2
1,192,194	+				+1.5
1,192,194	+				-0.1
1,192,194	+				-1.5
1,192,194	+				-0.7
1,192,195	-				-0.2
1,192,195	-				+0.8
1,192,195	-				-2.3
1,192,195	-				-0.4
1,192,195	-				+0.8
1,192,195	-				-2.1
1,192,221	+				+0.8
1,192,235	+				+0.9
1,192,301	+				+1.3
1,192,327	-				-0.0
1,192,334	+				+0.0
1,192,335	-				-1.1
1,192,346	+				-2.3
1,192,347	-				-2.4
1,192,347	-				+0.0
1,192,347	-				+1.2
1,192,347	-				+1.8
1,192,347	-				-1.4
1,192,425	+		IAI47_05700	0.28	+0.3
1,192,425	+		IAI47_05700	0.28	-2.5
1,192,425	+		IAI47_05700	0.28	-0.4
1,192,425	+		IAI47_05700	0.28	-0.6
1,192,426	-		IAI47_05700	0.28	-0.4
1,192,426	-		IAI47_05700	0.28	+0.7
1,192,426	-		IAI47_05700	0.28	+0.4
1,192,437	-		IAI47_05700	0.32	+0.8
1,192,437	-		IAI47_05700	0.32	+1.5
1,192,464	+		IAI47_05700	0.42	-0.6
1,192,464	+		IAI47_05700	0.42	-0.4
1,192,465	-		IAI47_05700	0.42	+0.7
1,192,465	-		IAI47_05700	0.42	-1.5
1,192,571	+		IAI47_05700	0.79	-0.7
1,192,572	-		IAI47_05700	0.80	+1.0
1,192,572	-		IAI47_05700	0.80	-0.4
1,192,572	-		IAI47_05700	0.80	-0.6
1,192,603	+				+0.4
1,192,603	+				+1.7
1,192,604	-				+0.2
1,192,604	-				-0.6
1,192,604	-				-0.4
1,192,620	-				+1.3
1,192,643	+				+0.2
1,192,644	-				+1.5
1,192,644	-				+1.5
1,192,644	-				-0.5
1,192,644	-				-0.4
1,192,644	-				+0.5
1,192,648	+				-0.3
1,192,693	+		IAI47_05705	0.28	-0.4
1,192,693	+		IAI47_05705	0.28	-0.9
1,192,694	-		IAI47_05705	0.28	-1.2
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1,192,718	-		IAI47_05705	0.38	-0.8
1,192,778	+		IAI47_05705	0.63	+0.8
1,192,779	-		IAI47_05705	0.63	+0.4
1,192,779	-		IAI47_05705	0.63	-0.2
1,192,779	-		IAI47_05705	0.63	-0.6
1,192,779	-		IAI47_05705	0.63	-0.0
1,192,789	+		IAI47_05705	0.67	-0.4
1,192,789	+		IAI47_05705	0.67	+2.5
1,192,789	+		IAI47_05705	0.67	-1.5
1,192,790	-		IAI47_05705	0.67	-0.8
1,192,790	-		IAI47_05705	0.67	+0.5
1,192,810	-		IAI47_05705	0.76	+1.3
1,192,821	-		IAI47_05705	0.80	-1.2
1,192,854	+				-0.4
1,192,855	-				-1.3
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1,192,868	+				-0.6
1,192,868	+				+1.0
1,192,868	+				-0.9
1,192,868	+				+1.4
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1,192,868	+				-0.7
1,192,868	+				-2.5
1,192,869	-				-0.0
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1,192,872	+				+0.6
1,192,891	+				-1.2
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1,192,892	-				-1.1
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1,192,926	+		IAI47_05710	0.11	+0.4
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1,192,926	+		IAI47_05710	0.11	+0.0
1,192,927	-		IAI47_05710	0.11	-1.9
1,192,941	+		IAI47_05710	0.17	-1.1
1,192,941	+		IAI47_05710	0.17	-0.9
1,192,966	+		IAI47_05710	0.27	-0.6
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1,192,967	-		IAI47_05710	0.28	-0.7
1,192,967	-		IAI47_05710	0.28	-1.2
1,193,014	+		IAI47_05710	0.47	-1.5
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1,193,102	+		IAI47_05710	0.83	+0.1
1,193,138	+				+0.2
1,193,139	-				-2.0
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1,193,182	+		IAI47_05715	0.12	-1.2
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1,193,199	+		IAI47_05715	0.17	-1.2
1,193,199	+		IAI47_05715	0.17	-1.4
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1,193,200	-		IAI47_05715	0.18	-1.0
1,193,200	-		IAI47_05715	0.18	+0.1