Strain Fitness in Pantoea sp. MT58 around IAI47_05340

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,129,514	-				-1.2
1,129,519	+				+1.4
1,129,582	+				+1.2
1,129,582	+				+0.1
1,129,672	+				+0.2
1,129,673	-				-0.8
1,129,678	-				+0.9
1,129,700	+				+0.0
1,129,701	-				+1.0
1,129,701	-				+1.2
1,129,709	+				+1.0
1,129,709	+				-0.6
1,129,709	+				-1.1
1,129,709	+				+0.1
1,129,710	-				-1.7
1,129,710	-				+2.7
1,129,710	-				-2.2
1,129,710	-				-1.0
1,129,710	-				-0.3
1,129,710	-				+0.0
1,129,710	-				+1.8
1,129,710	-				-0.5
1,129,747	+				-0.7
1,129,747	+				-0.1
1,129,747	+				-0.2
1,129,748	-				+0.9
1,129,748	-				+1.4
1,129,769	-				-1.1
1,129,769	-				+0.9
1,129,805	+		IAI47_05335	0.11	-2.4
1,129,805	+		IAI47_05335	0.11	-0.1
1,129,805	+		IAI47_05335	0.11	-0.0
1,129,805	+		IAI47_05335	0.11	+1.7
1,129,805	+		IAI47_05335	0.11	-0.2
1,129,805	+		IAI47_05335	0.11	-2.2
1,129,805	+		IAI47_05335	0.11	+1.2
1,129,805	+		IAI47_05335	0.11	-1.0
1,129,805	+		IAI47_05335	0.11	+0.3
1,129,805	+		IAI47_05335	0.11	+0.1
1,129,805	+		IAI47_05335	0.11	+1.0
1,129,806	-		IAI47_05335	0.12	+1.6
1,129,806	-		IAI47_05335	0.12	+1.3
1,129,806	-		IAI47_05335	0.12	-0.4
1,129,806	-		IAI47_05335	0.12	-0.7
1,129,806	-		IAI47_05335	0.12	-0.4
1,129,806	-		IAI47_05335	0.12	+0.4
1,129,806	-		IAI47_05335	0.12	-0.6
1,129,806	-		IAI47_05335	0.12	-0.6
1,129,806	-		IAI47_05335	0.12	+0.0
1,129,806	-		IAI47_05335	0.12	+0.6
1,129,811	+		IAI47_05335	0.12	+1.7
1,129,811	+		IAI47_05335	0.12	-0.3
1,129,811	+		IAI47_05335	0.12	-0.4
1,129,811	+		IAI47_05335	0.12	-0.5
1,129,811	+		IAI47_05335	0.12	-0.2
1,129,811	+		IAI47_05335	0.12	+1.9
1,129,811	+		IAI47_05335	0.12	+1.0
1,129,811	+		IAI47_05335	0.12	+0.6
1,129,811	+		IAI47_05335	0.12	+3.8
1,129,811	+		IAI47_05335	0.12	-0.5
1,129,811	+		IAI47_05335	0.12	-0.1
1,129,811	+		IAI47_05335	0.12	+0.1
1,129,811	+		IAI47_05335	0.12	+0.7
1,129,811	+		IAI47_05335	0.12	+0.1
1,129,811	+		IAI47_05335	0.12	-0.8
1,129,811	+		IAI47_05335	0.12	+0.6
1,129,812	-		IAI47_05335	0.13	+1.3
1,129,812	-		IAI47_05335	0.13	+0.4
1,129,812	-		IAI47_05335	0.13	+0.1
1,129,812	-		IAI47_05335	0.13	+0.9
1,129,812	-		IAI47_05335	0.13	-0.4
1,129,812	-		IAI47_05335	0.13	+0.1
1,129,812	-		IAI47_05335	0.13	+0.1
1,129,812	-		IAI47_05335	0.13	+1.1
1,129,812	-		IAI47_05335	0.13	+0.6
1,129,862	+		IAI47_05335	0.21	+0.5
1,129,863	-		IAI47_05335	0.21	-1.2
1,129,895	+		IAI47_05335	0.27	+0.5
1,129,895	+		IAI47_05335	0.27	+1.6
1,129,896	-		IAI47_05335	0.27	-0.5
1,129,896	-		IAI47_05335	0.27	+0.7
1,129,896	-		IAI47_05335	0.27	+2.4
1,129,897	+		IAI47_05335	0.27	+1.7
1,129,898	-		IAI47_05335	0.27	+0.2
1,129,898	-		IAI47_05335	0.27	+0.7
1,129,912	+		IAI47_05335	0.30	+1.7
1,129,912	+		IAI47_05335	0.30	+0.4
1,129,914	-		IAI47_05335	0.30	-0.0
1,129,977	+		IAI47_05335	0.41	-0.9
1,129,977	+		IAI47_05335	0.41	-0.9
1,129,978	-		IAI47_05335	0.41	-1.1
1,129,978	-		IAI47_05335	0.41	+0.3
1,129,978	-		IAI47_05335	0.41	+3.7
1,129,978	-		IAI47_05335	0.41	-1.5
1,129,978	-		IAI47_05335	0.41	-0.7
1,130,057	+		IAI47_05335	0.55	-1.2
1,130,058	-		IAI47_05335	0.55	+0.4
1,130,086	+		IAI47_05335	0.60	+1.2
1,130,086	+		IAI47_05335	0.60	-0.2
1,130,086	+		IAI47_05335	0.60	-0.1
1,130,087	-		IAI47_05335	0.60	+1.1
1,130,087	-		IAI47_05335	0.60	-2.2
1,130,087	-		IAI47_05335	0.60	+2.3
1,130,093	+		IAI47_05335	0.61	+0.4
1,130,093	+		IAI47_05335	0.61	-0.6
1,130,093	+		IAI47_05335	0.61	-2.0
1,130,093	+		IAI47_05335	0.61	+0.5
1,130,093	+		IAI47_05335	0.61	+1.8
1,130,094	-		IAI47_05335	0.61	-0.2
1,130,094	-		IAI47_05335	0.61	-0.2
1,130,094	-		IAI47_05335	0.61	-0.6
1,130,094	-		IAI47_05335	0.61	-0.1
1,130,094	-		IAI47_05335	0.61	+0.8
1,130,094	-		IAI47_05335	0.61	+0.6
1,130,094	-		IAI47_05335	0.61	+0.3
1,130,094	-		IAI47_05335	0.61	-1.3
1,130,094	-		IAI47_05335	0.61	+2.5
1,130,094	-		IAI47_05335	0.61	-0.2
1,130,095	+		IAI47_05335	0.61	+0.0
1,130,095	+		IAI47_05335	0.61	-0.2
1,130,095	+		IAI47_05335	0.61	-2.0
1,130,095	+		IAI47_05335	0.61	-0.1
1,130,095	+		IAI47_05335	0.61	-0.1
1,130,095	+		IAI47_05335	0.61	-1.7
1,130,095	+		IAI47_05335	0.61	-1.0
1,130,095	+		IAI47_05335	0.61	-3.2
1,130,095	+		IAI47_05335	0.61	-1.5
1,130,095	+		IAI47_05335	0.61	+0.4
1,130,095	+		IAI47_05335	0.61	+0.4
1,130,095	+		IAI47_05335	0.61	-0.4
1,130,096	-		IAI47_05335	0.62	+0.0
1,130,096	-		IAI47_05335	0.62	+1.2
1,130,096	-		IAI47_05335	0.62	+0.3
1,130,096	-		IAI47_05335	0.62	-0.1
1,130,096	-		IAI47_05335	0.62	-0.5
1,130,096	-		IAI47_05335	0.62	-1.0
1,130,096	-		IAI47_05335	0.62	-1.2
1,130,096	-		IAI47_05335	0.62	+0.5
1,130,096	-		IAI47_05335	0.62	+2.4
1,130,096	-		IAI47_05335	0.62	+0.6
1,130,096	-		IAI47_05335	0.62	+1.5
1,130,096	-		IAI47_05335	0.62	-0.1
1,130,096	-		IAI47_05335	0.62	+1.2
1,130,096	-		IAI47_05335	0.62	+1.8
1,130,096	-		IAI47_05335	0.62	-0.2
1,130,144	+		IAI47_05335	0.70	+0.3
1,130,144	+		IAI47_05335	0.70	-0.3
1,130,144	+		IAI47_05335	0.70	-0.1
1,130,144	+		IAI47_05335	0.70	+1.1
1,130,263	+				-2.3
1,130,263	+				-0.8
1,130,272	+				-0.7
1,130,272	+				-0.7
1,130,272	+				+1.3
1,130,272	+				-0.7
1,130,273	-				-0.7
1,130,273	-				-0.5
1,130,273	-				+0.7
1,130,273	-				+2.3
1,130,280	+				-0.2
1,130,280	+				-0.2
1,130,281	-				-1.5
1,130,316	-				-0.5
1,130,333	+				+0.7
1,130,333	+				-0.4
1,130,333	+				+1.5
1,130,334	-				+0.6
1,130,334	-				+0.8
1,130,334	-				+1.6
1,130,334	-				+0.4
1,130,334	-				+0.9
1,130,334	-				+0.5
1,130,334	-				+0.7
1,130,334	-				+0.9
1,130,379	-				-0.7
1,130,379	-				+3.5
1,130,387	+				-0.9
1,130,387	+				+2.8
1,130,387	+				+0.1
1,130,387	+				+0.3
1,130,387	+				+2.0
1,130,387	+				+0.2
1,130,387	+				-1.2
1,130,387	+				+0.3
1,130,388	-				+0.6
1,130,388	-				-3.2
1,130,388	-				-0.2
1,130,388	-				-0.9
1,130,388	-				-0.2
1,130,388	-				-0.3
1,130,388	-				+0.2
1,130,388	-				+1.2
1,130,388	-				+1.5
1,130,388	-				+1.8
1,130,388	-				+0.1
1,130,388	-				-0.7
1,130,392	-				-1.1
1,130,408	+				-1.2
1,130,408	+				+0.0
1,130,409	-				+1.6
1,130,409	-				+2.2
1,130,505	+				+1.6
1,130,505	+				-0.5
1,130,506	-				+0.4
1,130,514	-				-0.9
1,130,605	+				+0.6
1,130,606	-				+0.2
1,130,606	-				-0.1
1,130,641	+		IAI47_05340	0.12	+0.1
1,130,641	+		IAI47_05340	0.12	+1.4
1,130,642	-		IAI47_05340	0.13	+0.6
1,130,713	+		IAI47_05340	0.19	-1.6
1,130,713	+		IAI47_05340	0.19	-0.8
1,130,714	-		IAI47_05340	0.19	+0.7
1,130,721	-		IAI47_05340	0.20	-0.7
1,130,721	-		IAI47_05340	0.20	-2.4
1,130,732	+		IAI47_05340	0.21	+0.5
1,130,732	+		IAI47_05340	0.21	-1.1
1,130,732	+		IAI47_05340	0.21	-2.5
1,130,733	-		IAI47_05340	0.21	-0.6
1,130,733	-		IAI47_05340	0.21	+0.4
1,130,733	-		IAI47_05340	0.21	-0.8
1,130,768	-		IAI47_05340	0.24	-0.6
1,130,795	-		IAI47_05340	0.27	+0.3
1,130,795	-		IAI47_05340	0.27	-0.4
1,130,795	-		IAI47_05340	0.27	-1.0
1,130,820	+		IAI47_05340	0.29	-0.9
1,130,821	-		IAI47_05340	0.29	-0.3
1,130,821	-		IAI47_05340	0.29	+0.3
1,130,821	-		IAI47_05340	0.29	+0.0
1,130,821	-		IAI47_05340	0.29	+1.6
1,130,821	-		IAI47_05340	0.29	-1.0
1,130,848	+		IAI47_05340	0.32	+0.6
1,130,848	+		IAI47_05340	0.32	+0.4
1,130,848	+		IAI47_05340	0.32	+0.5
1,130,848	+		IAI47_05340	0.32	+0.0
1,130,848	+		IAI47_05340	0.32	-0.5
1,130,848	+		IAI47_05340	0.32	-1.9
1,130,849	-		IAI47_05340	0.32	-0.2
1,130,849	-		IAI47_05340	0.32	+0.0
1,130,849	-		IAI47_05340	0.32	-0.4
1,130,849	-		IAI47_05340	0.32	-1.2
1,130,849	-		IAI47_05340	0.32	-0.2
1,130,849	-		IAI47_05340	0.32	+0.4
1,130,859	+		IAI47_05340	0.33	+1.0
1,131,125	+		IAI47_05340	0.58	-0.9
1,131,125	+		IAI47_05340	0.58	+0.3
1,131,146	-		IAI47_05340	0.59	+1.0
1,131,245	+		IAI47_05340	0.69	-0.4
1,131,245	+		IAI47_05340	0.69	-1.6
1,131,245	+		IAI47_05340	0.69	+1.9
1,131,245	+		IAI47_05340	0.69	-0.2
1,131,245	+		IAI47_05340	0.69	+1.7
1,131,246	-		IAI47_05340	0.69	+0.5
1,131,246	-		IAI47_05340	0.69	-0.3
1,131,246	-		IAI47_05340	0.69	-0.9
1,131,246	-		IAI47_05340	0.69	-1.4
1,131,246	-		IAI47_05340	0.69	-0.5
1,131,246	-		IAI47_05340	0.69	-1.2
1,131,247	+		IAI47_05340	0.69	-1.8
1,131,247	+		IAI47_05340	0.69	+0.2
1,131,248	-		IAI47_05340	0.69	+0.3
1,131,290	+		IAI47_05340	0.73	+0.3
1,131,290	+		IAI47_05340	0.73	-2.3
1,131,290	+		IAI47_05340	0.73	+0.3
1,131,290	+		IAI47_05340	0.73	-1.2
1,131,290	+		IAI47_05340	0.73	+0.3
1,131,290	+		IAI47_05340	0.73	+0.0
1,131,290	+		IAI47_05340	0.73	+1.9
1,131,290	+		IAI47_05340	0.73	+0.2
1,131,290	+		IAI47_05340	0.73	-1.0
1,131,290	+		IAI47_05340	0.73	+0.1
1,131,291	-		IAI47_05340	0.73	-0.1
1,131,291	-		IAI47_05340	0.73	+1.1
1,131,291	-		IAI47_05340	0.73	-0.3
1,131,304	+		IAI47_05340	0.74	-1.9
1,131,304	+		IAI47_05340	0.74	+1.1
1,131,304	+		IAI47_05340	0.74	-0.7
1,131,304	+		IAI47_05340	0.74	+0.5
1,131,305	-		IAI47_05340	0.74	-2.2
1,131,307	+		IAI47_05340	0.74	-1.0
1,131,307	+		IAI47_05340	0.74	+0.1
1,131,308	-		IAI47_05340	0.75	+0.6
1,131,308	-		IAI47_05340	0.75	+0.5
1,131,308	-		IAI47_05340	0.75	+1.2
1,131,308	-		IAI47_05340	0.75	+0.4
1,131,313	-		IAI47_05340	0.75	+0.5
1,131,313	-		IAI47_05340	0.75	-0.6
1,131,313	-		IAI47_05340	0.75	-2.9
1,131,364	+		IAI47_05340	0.80	+1.7
1,131,365	-		IAI47_05340	0.80	-1.6
1,131,374	+		IAI47_05340	0.81	-1.6
1,131,374	+		IAI47_05340	0.81	+0.0
1,131,375	-		IAI47_05340	0.81	-1.7
1,131,398	+		IAI47_05340	0.83	+0.0
1,131,398	+		IAI47_05340	0.83	+0.4
1,131,399	-		IAI47_05340	0.83	+2.6
1,131,399	-		IAI47_05340	0.83	+2.1
1,131,399	-		IAI47_05340	0.83	-0.4
1,131,399	-		IAI47_05340	0.83	-1.6
1,131,410	-		IAI47_05340	0.84	-1.1
1,131,567	+				-1.5
1,131,567	+				+0.8
1,131,567	+				+0.9
1,131,567	+				-0.1
1,131,567	+				+0.7
1,131,567	-				+0.2
1,131,568	-				-0.5
1,131,568	-				+1.2
1,131,639	+				-0.1
1,131,639	+				-2.6
1,131,640	-				-1.4
1,131,640	-				+0.1
1,131,640	-				+1.8
1,131,640	-				+1.0
1,131,666	+				-0.2
1,131,667	-				+1.5
1,131,714	+		IAI47_05345	0.12	+0.6
1,131,714	+		IAI47_05345	0.12	+1.9
1,131,714	+		IAI47_05345	0.12	-0.0
1,131,714	+		IAI47_05345	0.12	-1.3
1,131,715	-		IAI47_05345	0.12	+0.5
1,131,715	-		IAI47_05345	0.12	+0.2
1,131,715	-		IAI47_05345	0.12	+0.7
1,131,715	-		IAI47_05345	0.12	+0.2
1,131,735	+		IAI47_05345	0.14	+0.0
1,131,736	-		IAI47_05345	0.14	+0.3
1,131,737	+		IAI47_05345	0.14	+1.4
1,131,737	+		IAI47_05345	0.14	+0.6
1,131,737	+		IAI47_05345	0.14	-0.6
1,131,737	+		IAI47_05345	0.14	+0.5
1,131,737	+		IAI47_05345	0.14	-0.3
1,131,737	+		IAI47_05345	0.14	+1.1
1,131,737	+		IAI47_05345	0.14	+0.6
1,131,737	+		IAI47_05345	0.14	-1.3
1,131,737	+		IAI47_05345	0.14	-1.0
1,131,738	-		IAI47_05345	0.14	+0.0
1,131,738	-		IAI47_05345	0.14	+1.6
1,131,738	-		IAI47_05345	0.14	-2.3
1,131,738	-		IAI47_05345	0.14	-0.2
1,131,738	-		IAI47_05345	0.14	-0.2
1,131,738	-		IAI47_05345	0.14	+1.3
1,131,738	-		IAI47_05345	0.14	-0.6
1,131,738	-		IAI47_05345	0.14	-0.2
1,131,738	-		IAI47_05345	0.14	-1.9
1,131,738	-		IAI47_05345	0.14	-3.0
1,131,738	-		IAI47_05345	0.14	+0.2
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