Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02865 and IAI47_02870 are separated by 202 nucleotides IAI47_02870 and IAI47_02875 overlap by 1 nucleotides IAI47_02875 and IAI47_02880 are separated by 2 nucleotides IAI47_02880 and IAI47_02885 are separated by 35 nucleotides IAI47_02885 and IAI47_02890 are separated by 189 nucleotides IAI47_02890 and IAI47_02895 overlap by 1 nucleotides
IAI47_02865: IAI47_02865 - DoxX family protein, at 591,523 to 591,918
_02865
IAI47_02870: IAI47_02870 - YqjK-like family protein, at 592,121 to 592,405
_02870
IAI47_02875: IAI47_02875 - phage holin family protein, at 592,405 to 592,800
_02875
IAI47_02880: IAI47_02880 - DUF883 domain-containing protein, at 592,803 to 593,108
_02880
IAI47_02885: IAI47_02885 - DUF1090 domain-containing protein, at 593,144 to 593,518
_02885
IAI47_02890: IAI47_02890 - EnvZ/OmpR regulon moderator MzrA, at 593,708 to 594,055
_02890
IAI47_02895: IAI47_02895 - DedA family protein, at 594,055 to 594,729
_02895
Position (kb) 592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.807 kb on + strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.808 kb on - strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.809 kb on + strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.810 kb on - strand, within IAI47_02865 at 591.819 kb on + strand, within IAI47_02865 at 591.820 kb on - strand, within IAI47_02865 at 591.820 kb on - strand, within IAI47_02865 at 591.820 kb on - strand, within IAI47_02865 at 591.827 kb on + strand, within IAI47_02865 at 591.828 kb on - strand, within IAI47_02865 at 591.889 kb on + strand at 591.889 kb on + strand at 591.890 kb on - strand at 591.892 kb on + strand at 591.923 kb on + strand at 591.924 kb on - strand at 591.924 kb on - strand at 591.968 kb on + strand at 591.968 kb on + strand at 591.968 kb on + strand at 591.968 kb on + strand at 591.969 kb on - strand at 591.969 kb on - strand at 591.969 kb on - strand at 591.969 kb on - strand at 591.986 kb on + strand at 591.986 kb on + strand at 591.986 kb on + strand at 591.987 kb on - strand at 591.987 kb on - strand at 592.019 kb on + strand at 592.019 kb on + strand at 592.019 kb on + strand at 592.019 kb on + strand at 592.020 kb on - strand at 592.020 kb on - strand at 592.020 kb on - strand at 592.020 kb on - strand at 592.041 kb on + strand at 592.042 kb on - strand at 592.042 kb on - strand at 592.042 kb on - strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.051 kb on - strand at 592.051 kb on - strand at 592.051 kb on - strand at 592.052 kb on + strand at 592.052 kb on + strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.111 kb on - strand at 592.114 kb on - strand at 592.144 kb on + strand at 592.144 kb on + strand at 592.145 kb on - strand at 592.145 kb on - strand at 592.145 kb on - strand at 592.145 kb on - strand at 592.159 kb on + strand, within IAI47_02870 at 592.160 kb on - strand, within IAI47_02870 at 592.193 kb on + strand, within IAI47_02870 at 592.194 kb on - strand, within IAI47_02870 at 592.201 kb on + strand, within IAI47_02870 at 592.210 kb on + strand, within IAI47_02870 at 592.211 kb on - strand, within IAI47_02870 at 592.222 kb on - strand, within IAI47_02870 at 592.254 kb on + strand, within IAI47_02870 at 592.255 kb on - strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.262 kb on + strand, within IAI47_02870 at 592.263 kb on - strand, within IAI47_02870 at 592.263 kb on - strand, within IAI47_02870 at 592.263 kb on - strand, within IAI47_02870 at 592.276 kb on + strand, within IAI47_02870 at 592.276 kb on + strand, within IAI47_02870 at 592.277 kb on - strand, within IAI47_02870 at 592.277 kb on - strand, within IAI47_02870 at 592.293 kb on + strand, within IAI47_02870 at 592.334 kb on + strand, within IAI47_02870 at 592.334 kb on + strand, within IAI47_02870 at 592.334 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.363 kb on + strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.364 kb on - strand, within IAI47_02870 at 592.429 kb on - strand at 592.449 kb on + strand, within IAI47_02875 at 592.449 kb on + strand, within IAI47_02875 at 592.449 kb on + strand, within IAI47_02875 at 592.450 kb on - strand, within IAI47_02875 at 592.455 kb on + strand, within IAI47_02875 at 592.456 kb on - strand, within IAI47_02875 at 592.456 kb on - strand, within IAI47_02875 at 592.463 kb on - strand, within IAI47_02875 at 592.562 kb on + strand, within IAI47_02875 at 592.562 kb on + strand, within IAI47_02875 at 592.562 kb on + strand, within IAI47_02875 at 592.563 kb on - strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.573 kb on + strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.574 kb on - strand, within IAI47_02875 at 592.584 kb on + strand, within IAI47_02875 at 592.665 kb on + strand, within IAI47_02875 at 592.665 kb on + strand, within IAI47_02875 at 592.666 kb on - strand, within IAI47_02875 at 592.666 kb on - strand, within IAI47_02875 at 592.740 kb on + strand, within IAI47_02875 at 592.740 kb on + strand, within IAI47_02875 at 592.755 kb on + strand, within IAI47_02875 at 592.755 kb on + strand, within IAI47_02875 at 592.755 kb on + strand, within IAI47_02875 at 592.756 kb on - strand, within IAI47_02875 at 592.756 kb on - strand, within IAI47_02875 at 592.800 kb on + strand at 592.800 kb on + strand at 592.800 kb on + strand at 592.800 kb on + strand at 592.800 kb on + strand at 592.801 kb on - strand at 592.801 kb on - strand at 592.801 kb on - strand at 592.804 kb on + strand at 592.804 kb on + strand at 592.804 kb on + strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.885 kb on + strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.886 kb on - strand, within IAI47_02880 at 592.916 kb on + strand, within IAI47_02880 at 592.998 kb on - strand, within IAI47_02880 at 593.025 kb on - strand, within IAI47_02880 at 593.037 kb on + strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.038 kb on - strand, within IAI47_02880 at 593.052 kb on - strand, within IAI47_02880 at 593.103 kb on - strand at 593.109 kb on - strand at 593.136 kb on - strand at 593.136 kb on - strand at 593.209 kb on + strand, within IAI47_02885 at 593.209 kb on + strand, within IAI47_02885 at 593.293 kb on + strand, within IAI47_02885 at 593.294 kb on - strand, within IAI47_02885 at 593.294 kb on - strand, within IAI47_02885 at 593.327 kb on - strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.392 kb on + strand, within IAI47_02885 at 593.393 kb on - strand, within IAI47_02885 at 593.393 kb on - strand, within IAI47_02885 at 593.425 kb on + strand, within IAI47_02885 at 593.425 kb on + strand, within IAI47_02885 at 593.426 kb on - strand, within IAI47_02885 at 593.426 kb on - strand, within IAI47_02885 at 593.426 kb on - strand, within IAI47_02885 at 593.504 kb on + strand at 593.504 kb on + strand at 593.504 kb on + strand at 593.504 kb on + strand at 593.505 kb on - strand at 593.505 kb on - strand at 593.505 kb on - strand at 593.505 kb on - strand at 593.511 kb on + strand at 593.511 kb on + strand at 593.511 kb on + strand at 593.511 kb on + strand at 593.512 kb on - strand at 593.512 kb on - strand at 593.512 kb on - strand at 593.512 kb on - strand at 593.602 kb on + strand at 593.603 kb on - strand at 593.608 kb on + strand at 593.608 kb on + strand at 593.608 kb on + strand at 593.609 kb on - strand at 593.609 kb on - strand at 593.609 kb on - strand at 593.619 kb on - strand at 593.622 kb on - strand at 593.647 kb on + strand at 593.648 kb on - strand at 593.648 kb on - strand at 593.648 kb on - strand at 593.709 kb on + strand at 593.709 kb on + strand at 593.709 kb on + strand at 593.709 kb on + strand at 593.710 kb on - strand at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.752 kb on + strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.753 kb on - strand, within IAI47_02890 at 593.850 kb on - strand, within IAI47_02890 at 593.850 kb on - strand, within IAI47_02890 at 593.861 kb on - strand, within IAI47_02890 at 593.866 kb on + strand, within IAI47_02890 at 593.867 kb on - strand, within IAI47_02890 at 593.867 kb on - strand, within IAI47_02890 at 593.867 kb on - strand, within IAI47_02890 at 593.879 kb on + strand, within IAI47_02890 at 593.879 kb on + strand, within IAI47_02890 at 593.879 kb on + strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.880 kb on - strand, within IAI47_02890 at 593.889 kb on + strand, within IAI47_02890 at 593.889 kb on + strand, within IAI47_02890 at 593.889 kb on + strand, within IAI47_02890 at 593.890 kb on - strand, within IAI47_02890 at 593.890 kb on - strand, within IAI47_02890 at 593.890 kb on - strand, within IAI47_02890 at 593.895 kb on + strand, within IAI47_02890 at 593.895 kb on + strand, within IAI47_02890 at 593.895 kb on + strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 593.896 kb on - strand, within IAI47_02890 at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.031 kb on + strand at 594.037 kb on + strand at 594.037 kb on + strand at 594.038 kb on - strand at 594.090 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.097 kb on + strand at 594.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 591,807 + IAI47_02865 0.72 +0.6 591,807 + IAI47_02865 0.72 +0.0 591,807 + IAI47_02865 0.72 +1.3 591,807 + IAI47_02865 0.72 -1.4 591,807 + IAI47_02865 0.72 -0.6 591,807 + IAI47_02865 0.72 -0.1 591,807 + IAI47_02865 0.72 -0.0 591,807 + IAI47_02865 0.72 +1.2 591,807 + IAI47_02865 0.72 +1.0 591,807 + IAI47_02865 0.72 +0.7 591,807 + IAI47_02865 0.72 -0.3 591,808 - IAI47_02865 0.72 +2.5 591,808 - IAI47_02865 0.72 +0.3 591,808 - IAI47_02865 0.72 -0.3 591,808 - IAI47_02865 0.72 +1.1 591,808 - IAI47_02865 0.72 +0.9 591,808 - IAI47_02865 0.72 +1.0 591,808 - IAI47_02865 0.72 -1.2 591,808 - IAI47_02865 0.72 -2.1 591,808 - IAI47_02865 0.72 -0.2 591,808 - IAI47_02865 0.72 +0.3 591,808 - IAI47_02865 0.72 +1.5 591,809 + IAI47_02865 0.72 -0.4 591,809 + IAI47_02865 0.72 +0.2 591,809 + IAI47_02865 0.72 +0.8 591,809 + IAI47_02865 0.72 -1.5 591,809 + IAI47_02865 0.72 -0.0 591,809 + IAI47_02865 0.72 -1.4 591,809 + IAI47_02865 0.72 +0.2 591,809 + IAI47_02865 0.72 +0.2 591,809 + IAI47_02865 0.72 -0.3 591,809 + IAI47_02865 0.72 +0.1 591,809 + IAI47_02865 0.72 +0.6 591,810 - IAI47_02865 0.72 +1.6 591,810 - IAI47_02865 0.72 -0.2 591,810 - IAI47_02865 0.72 +0.8 591,810 - IAI47_02865 0.72 +0.1 591,810 - IAI47_02865 0.72 -1.3 591,810 - IAI47_02865 0.72 +0.2 591,810 - IAI47_02865 0.72 -0.3 591,810 - IAI47_02865 0.72 -0.6 591,810 - IAI47_02865 0.72 +0.8 591,819 + IAI47_02865 0.75 -0.7 591,820 - IAI47_02865 0.75 -0.4 591,820 - IAI47_02865 0.75 +0.7 591,820 - IAI47_02865 0.75 +0.2 591,827 + IAI47_02865 0.77 -0.5 591,828 - IAI47_02865 0.77 -0.3 591,889 + +1.6 591,889 + -1.3 591,890 - +0.8 591,892 + +0.4 591,923 + -0.9 591,924 - +0.2 591,924 - +1.3 591,968 + -1.3 591,968 + +1.9 591,968 + +1.4 591,968 + -0.2 591,969 - +0.3 591,969 - +1.4 591,969 - -0.1 591,969 - +0.5 591,986 + +0.8 591,986 + -0.5 591,986 + +1.8 591,987 - +1.8 591,987 - -1.5 592,019 + +1.8 592,019 + +0.0 592,019 + +0.8 592,019 + -2.7 592,020 - -1.0 592,020 - +1.7 592,020 - +0.2 592,020 - +2.6 592,041 + +0.4 592,042 - -1.7 592,042 - -0.8 592,042 - -1.6 592,050 + +1.1 592,050 + -0.7 592,050 + -1.0 592,051 - +0.9 592,051 - -1.3 592,051 - +1.4 592,052 + +3.5 592,052 + -0.1 592,053 - +1.9 592,053 - +1.0 592,053 - -0.2 592,053 - +0.2 592,111 - -0.1 592,114 - +0.7 592,144 + +3.0 592,144 + -1.3 592,145 - -0.5 592,145 - -0.6 592,145 - +1.5 592,145 - -0.7 592,159 + IAI47_02870 0.13 -0.8 592,160 - IAI47_02870 0.14 +0.6 592,193 + IAI47_02870 0.25 +0.0 592,194 - IAI47_02870 0.26 +1.6 592,201 + IAI47_02870 0.28 +0.4 592,210 + IAI47_02870 0.31 +0.3 592,211 - IAI47_02870 0.32 +0.5 592,222 - IAI47_02870 0.35 -0.7 592,254 + IAI47_02870 0.47 -0.5 592,255 - IAI47_02870 0.47 -1.3 592,262 + IAI47_02870 0.49 -0.5 592,262 + IAI47_02870 0.49 +0.2 592,262 + IAI47_02870 0.49 -0.7 592,262 + IAI47_02870 0.49 -1.0 592,262 + IAI47_02870 0.49 +2.2 592,262 + IAI47_02870 0.49 -0.5 592,263 - IAI47_02870 0.50 -1.2 592,263 - IAI47_02870 0.50 -0.2 592,263 - IAI47_02870 0.50 +0.2 592,276 + IAI47_02870 0.54 -2.6 592,276 + IAI47_02870 0.54 -0.7 592,277 - IAI47_02870 0.55 -0.0 592,277 - IAI47_02870 0.55 +0.4 592,293 + IAI47_02870 0.60 +0.6 592,334 + IAI47_02870 0.75 +0.0 592,334 + IAI47_02870 0.75 -1.3 592,334 + IAI47_02870 0.75 +0.3 592,363 + IAI47_02870 0.85 -0.6 592,363 + IAI47_02870 0.85 +1.2 592,363 + IAI47_02870 0.85 +0.0 592,363 + IAI47_02870 0.85 -0.5 592,363 + IAI47_02870 0.85 +0.0 592,363 + IAI47_02870 0.85 +2.4 592,363 + IAI47_02870 0.85 +0.7 592,363 + IAI47_02870 0.85 -1.6 592,364 - IAI47_02870 0.85 +0.4 592,364 - IAI47_02870 0.85 -0.7 592,364 - IAI47_02870 0.85 +2.0 592,364 - IAI47_02870 0.85 +0.2 592,429 - -0.7 592,449 + IAI47_02875 0.11 -1.6 592,449 + IAI47_02875 0.11 +0.3 592,449 + IAI47_02875 0.11 -0.1 592,450 - IAI47_02875 0.11 -0.5 592,455 + IAI47_02875 0.13 +0.6 592,456 - IAI47_02875 0.13 -1.8 592,456 - IAI47_02875 0.13 -1.4 592,463 - IAI47_02875 0.15 -0.5 592,562 + IAI47_02875 0.40 -1.3 592,562 + IAI47_02875 0.40 -0.2 592,562 + IAI47_02875 0.40 +0.6 592,563 - IAI47_02875 0.40 -0.8 592,573 + IAI47_02875 0.42 +0.4 592,573 + IAI47_02875 0.42 -0.8 592,573 + IAI47_02875 0.42 +1.2 592,573 + IAI47_02875 0.42 -0.1 592,573 + IAI47_02875 0.42 +0.7 592,574 - IAI47_02875 0.43 +0.2 592,574 - IAI47_02875 0.43 -1.9 592,574 - IAI47_02875 0.43 +0.2 592,574 - IAI47_02875 0.43 +2.9 592,574 - IAI47_02875 0.43 -0.5 592,574 - IAI47_02875 0.43 +0.9 592,574 - IAI47_02875 0.43 +1.0 592,584 + IAI47_02875 0.45 +0.7 592,665 + IAI47_02875 0.66 +0.3 592,665 + IAI47_02875 0.66 -1.2 592,666 - 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Or see this region's nucleotide sequence