Strain Fitness in Pantoea sp. MT58 around IAI47_01785

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01775 and IAI47_01780 are separated by 35 nucleotidesIAI47_01780 and IAI47_01785 are separated by 58 nucleotidesIAI47_01785 and IAI47_01790 are separated by 34 nucleotidesIAI47_01790 and IAI47_01795 are separated by 171 nucleotides IAI47_01775: IAI47_01775 - 4-alpha-glucanotransferase, at 388,614 to 390,695 _01775 IAI47_01780: IAI47_01780 - Fe-S biogenesis protein NfuA, at 390,731 to 391,306 _01780 IAI47_01785: IAI47_01785 - DNA utilization protein GntX, at 391,365 to 392,045 _01785 IAI47_01790: IAI47_01790 - pimeloyl-ACP methyl ester esterase BioH, at 392,080 to 392,856 _01790 IAI47_01795: IAI47_01795 - DUF1471 domain-containing protein, at 393,028 to 393,297 _01795 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 390.409 kb on + strand, within IAI47_01775at 390.536 kb on + strandat 390.536 kb on + strandat 390.568 kb on + strandat 390.568 kb on + strandat 390.569 kb on - strandat 390.569 kb on - strandat 390.569 kb on - strandat 390.576 kb on + strandat 390.576 kb on + strandat 390.581 kb on + strandat 390.581 kb on + strandat 390.582 kb on - strandat 390.582 kb on - strandat 390.582 kb on - strandat 390.582 kb on - strandat 390.641 kb on + strandat 390.641 kb on + strandat 390.641 kb on + strandat 390.642 kb on - strandat 390.642 kb on - strandat 390.642 kb on - strandat 390.693 kb on + strandat 390.726 kb on + strandat 390.726 kb on + strandat 390.726 kb on + strandat 390.726 kb on + strandat 390.726 kb on + strandat 390.726 kb on + strandat 390.726 kb on + strandat 390.727 kb on - strandat 390.727 kb on - strandat 390.727 kb on - strandat 390.727 kb on - strandat 390.735 kb on + strandat 390.735 kb on + strandat 390.736 kb on - strandat 390.888 kb on + strand, within IAI47_01780at 391.093 kb on - strand, within IAI47_01780at 391.116 kb on + strand, within IAI47_01780at 391.116 kb on + strand, within IAI47_01780at 391.117 kb on - strand, within IAI47_01780at 391.117 kb on - strand, within IAI47_01780at 391.179 kb on + strand, within IAI47_01780at 391.179 kb on + strand, within IAI47_01780at 391.180 kb on - strand, within IAI47_01780at 391.329 kb on - strandat 391.334 kb on - strandat 391.334 kb on - strandat 391.342 kb on - strandat 391.344 kb on - strandat 391.347 kb on - strandat 391.347 kb on - strandat 391.347 kb on - strandat 391.347 kb on - strandat 391.347 kb on - strandat 391.366 kb on + strandat 391.367 kb on - strandat 391.367 kb on - strandat 391.367 kb on - strandat 391.374 kb on - strandat 391.374 kb on - strandat 391.374 kb on - strandat 391.374 kb on - strandat 391.374 kb on - strandat 391.420 kb on - strandat 391.420 kb on - strandat 391.440 kb on + strand, within IAI47_01785at 391.440 kb on + strand, within IAI47_01785at 391.440 kb on + strand, within IAI47_01785at 391.440 kb on + strand, within IAI47_01785at 391.441 kb on - strand, within IAI47_01785at 391.441 kb on - strand, within IAI47_01785at 391.441 kb on - strand, within IAI47_01785at 391.441 kb on - strand, within IAI47_01785at 391.441 kb on - strand, within IAI47_01785at 391.441 kb on - strand, within IAI47_01785at 391.445 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.457 kb on + strand, within IAI47_01785at 391.458 kb on - strand, within IAI47_01785at 391.458 kb on - strand, within IAI47_01785at 391.458 kb on - strand, within IAI47_01785at 391.481 kb on + strand, within IAI47_01785at 391.524 kb on + strand, within IAI47_01785at 391.524 kb on + strand, within IAI47_01785at 391.524 kb on + strand, within IAI47_01785at 391.524 kb on + strand, within IAI47_01785at 391.525 kb on - strand, within IAI47_01785at 391.525 kb on - strand, within IAI47_01785at 391.530 kb on - strand, within IAI47_01785at 391.563 kb on + strand, within IAI47_01785at 391.563 kb on + strand, within IAI47_01785at 391.563 kb on + strand, within IAI47_01785at 391.564 kb on - strand, within IAI47_01785at 391.564 kb on - strand, within IAI47_01785at 391.564 kb on - strand, within IAI47_01785at 391.739 kb on + strand, within IAI47_01785at 391.739 kb on + strand, within IAI47_01785at 391.740 kb on - strand, within IAI47_01785at 391.740 kb on - strand, within IAI47_01785at 391.788 kb on + strand, within IAI47_01785at 391.788 kb on + strand, within IAI47_01785at 391.789 kb on - strand, within IAI47_01785at 391.812 kb on - strand, within IAI47_01785at 391.837 kb on + strand, within IAI47_01785at 391.837 kb on + strand, within IAI47_01785at 391.837 kb on + strand, within IAI47_01785at 391.837 kb on + strand, within IAI47_01785at 391.837 kb on + strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.838 kb on - strand, within IAI47_01785at 391.878 kb on - strand, within IAI47_01785at 391.957 kb on - strand, within IAI47_01785at 391.971 kb on + strand, within IAI47_01785at 391.971 kb on + strand, within IAI47_01785at 391.971 kb on + strand, within IAI47_01785at 391.971 kb on + strand, within IAI47_01785at 391.972 kb on - strand, within IAI47_01785at 391.972 kb on - strand, within IAI47_01785at 391.972 kb on - strand, within IAI47_01785at 391.972 kb on - strand, within IAI47_01785at 392.040 kb on + strandat 392.040 kb on + strandat 392.040 kb on + strandat 392.041 kb on - strandat 392.041 kb on - strandat 392.041 kb on - strandat 392.041 kb on - strandat 392.045 kb on + strandat 392.045 kb on + strandat 392.045 kb on + strandat 392.046 kb on - strandat 392.057 kb on + strandat 392.071 kb on + strandat 392.072 kb on - strandat 392.072 kb on - strandat 392.073 kb on + strandat 392.073 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.074 kb on + strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.075 kb on - strandat 392.175 kb on + strand, within IAI47_01790at 392.175 kb on + strand, within IAI47_01790at 392.175 kb on + strand, within IAI47_01790at 392.197 kb on + strand, within IAI47_01790at 392.197 kb on + strand, within IAI47_01790at 392.198 kb on - strand, within IAI47_01790at 392.198 kb on - strand, within IAI47_01790at 392.282 kb on + strand, within IAI47_01790at 392.282 kb on + strand, within IAI47_01790at 392.282 kb on + strand, within IAI47_01790at 392.283 kb on - strand, within IAI47_01790at 392.283 kb on - strand, within IAI47_01790at 392.283 kb on - strand, within IAI47_01790at 392.283 kb on - strand, within IAI47_01790at 392.388 kb on + strand, within IAI47_01790at 392.388 kb on + strand, within IAI47_01790at 392.388 kb on + strand, within IAI47_01790at 392.389 kb on - strand, within IAI47_01790at 392.439 kb on + strand, within IAI47_01790at 392.440 kb on - strand, within IAI47_01790at 392.478 kb on + strand, within IAI47_01790at 392.478 kb on + strand, within IAI47_01790at 392.573 kb on + strand, within IAI47_01790at 392.573 kb on + strand, within IAI47_01790at 392.574 kb on - strand, within IAI47_01790at 392.574 kb on - strand, within IAI47_01790at 392.574 kb on - strand, within IAI47_01790at 392.574 kb on - strand, within IAI47_01790at 392.655 kb on - strand, within IAI47_01790at 392.686 kb on + strand, within IAI47_01790at 392.686 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.696 kb on + strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.697 kb on - strand, within IAI47_01790at 392.793 kb on + strandat 392.793 kb on + strandat 392.793 kb on + strandat 392.794 kb on - strandat 392.794 kb on - strandat 392.826 kb on + strandat 392.827 kb on - strandat 392.836 kb on - strandat 392.895 kb on + strandat 392.895 kb on + strandat 392.895 kb on + strandat 392.895 kb on + strandat 392.895 kb on + strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.896 kb on - strandat 392.928 kb on + strandat 392.936 kb on + strandat 392.936 kb on + strandat 392.937 kb on - strandat 392.937 kb on - strandat 392.952 kb on + strandat 392.953 kb on - strandat 392.953 kb on - strandat 392.953 kb on - strandat 392.964 kb on + strandat 392.964 kb on + strandat 392.964 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.991 kb on + strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 392.992 kb on - strandat 393.020 kb on + strandat 393.020 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.026 kb on + strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.027 kb on - strandat 393.040 kb on - strandat 393.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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390,409 + IAI47_01775 0.86 -2.1
390,536 + +0.4
390,536 + +0.5
390,568 + -0.6
390,568 + +0.6
390,569 - -0.2
390,569 - -0.2
390,569 - -0.9
390,576 + +0.8
390,576 + +0.5
390,581 + -0.1
390,581 + -0.0
390,582 - +0.5
390,582 - -0.7
390,582 - -0.6
390,582 - +1.3
390,641 + +1.0
390,641 + +1.2
390,641 + +1.4
390,642 - +0.4
390,642 - -0.2
390,642 - -2.5
390,693 + -1.8
390,726 + +1.2
390,726 + +1.5
390,726 + +0.9
390,726 + +0.1
390,726 + +0.9
390,726 + +1.4
390,726 + +2.8
390,727 - +0.5
390,727 - -1.3
390,727 - +1.1
390,727 - +0.7
390,735 + -1.4
390,735 + +1.1
390,736 - +0.5
390,888 + IAI47_01780 0.27 +0.7
391,093 - IAI47_01780 0.63 -1.2
391,116 + IAI47_01780 0.67 +2.7
391,116 + IAI47_01780 0.67 -1.1
391,117 - IAI47_01780 0.67 -0.6
391,117 - IAI47_01780 0.67 +0.4
391,179 + IAI47_01780 0.78 +0.1
391,179 + IAI47_01780 0.78 +1.7
391,180 - IAI47_01780 0.78 -1.3
391,329 - -0.2
391,334 - +0.7
391,334 - -0.8
391,342 - +0.7
391,344 - -0.5
391,347 - -0.0
391,347 - -0.1
391,347 - -1.6
391,347 - -0.6
391,347 - +3.2
391,366 + -0.4
391,367 - +2.0
391,367 - +0.2
391,367 - -0.3
391,374 - +0.7
391,374 - -1.1
391,374 - +0.5
391,374 - +1.6
391,374 - -0.9
391,420 - +1.1
391,420 - -1.8
391,440 + IAI47_01785 0.11 +0.5
391,440 + IAI47_01785 0.11 -1.1
391,440 + IAI47_01785 0.11 -0.7
391,440 + IAI47_01785 0.11 -1.1
391,441 - IAI47_01785 0.11 +0.1
391,441 - IAI47_01785 0.11 -0.1
391,441 - IAI47_01785 0.11 -0.8
391,441 - IAI47_01785 0.11 +0.7
391,441 - IAI47_01785 0.11 +0.1
391,441 - IAI47_01785 0.11 +2.0
391,445 + IAI47_01785 0.12 +0.1
391,457 + IAI47_01785 0.14 +1.0
391,457 + IAI47_01785 0.14 -0.9
391,457 + IAI47_01785 0.14 -1.4
391,457 + IAI47_01785 0.14 +0.4
391,457 + IAI47_01785 0.14 -1.9
391,457 + IAI47_01785 0.14 +0.8
391,457 + IAI47_01785 0.14 -1.6
391,458 - IAI47_01785 0.14 +0.5
391,458 - IAI47_01785 0.14 -0.4
391,458 - IAI47_01785 0.14 -1.3
391,481 + IAI47_01785 0.17 +2.0
391,524 + IAI47_01785 0.23 -0.5
391,524 + IAI47_01785 0.23 -1.0
391,524 + IAI47_01785 0.23 +1.4
391,524 + IAI47_01785 0.23 -1.2
391,525 - IAI47_01785 0.23 +2.0
391,525 - IAI47_01785 0.23 -1.2
391,530 - IAI47_01785 0.24 +1.1
391,563 + IAI47_01785 0.29 -2.3
391,563 + IAI47_01785 0.29 -0.5
391,563 + IAI47_01785 0.29 +0.1
391,564 - IAI47_01785 0.29 -1.4
391,564 - IAI47_01785 0.29 -0.0
391,564 - IAI47_01785 0.29 +1.6
391,739 + IAI47_01785 0.55 -0.3
391,739 + IAI47_01785 0.55 -0.8
391,740 - IAI47_01785 0.55 -0.3
391,740 - IAI47_01785 0.55 +1.1
391,788 + IAI47_01785 0.62 +0.6
391,788 + IAI47_01785 0.62 -2.9
391,789 - IAI47_01785 0.62 -1.4
391,812 - IAI47_01785 0.66 +0.2
391,837 + IAI47_01785 0.69 -2.3
391,837 + IAI47_01785 0.69 +0.5
391,837 + IAI47_01785 0.69 -0.4
391,837 + IAI47_01785 0.69 -2.6
391,837 + IAI47_01785 0.69 -0.8
391,838 - IAI47_01785 0.69 +0.1
391,838 - IAI47_01785 0.69 -0.7
391,838 - IAI47_01785 0.69 -0.3
391,838 - IAI47_01785 0.69 -0.2
391,838 - IAI47_01785 0.69 +1.0
391,838 - IAI47_01785 0.69 -1.9
391,838 - IAI47_01785 0.69 +0.2
391,878 - IAI47_01785 0.75 +0.8
391,957 - IAI47_01785 0.87 -0.0
391,971 + IAI47_01785 0.89 -0.3
391,971 + IAI47_01785 0.89 -0.0
391,971 + IAI47_01785 0.89 -0.1
391,971 + IAI47_01785 0.89 +0.6
391,972 - IAI47_01785 0.89 +0.0
391,972 - IAI47_01785 0.89 +0.1
391,972 - IAI47_01785 0.89 -1.7
391,972 - IAI47_01785 0.89 -1.1
392,040 + -1.3
392,040 + +1.6
392,040 + -0.6
392,041 - -1.1
392,041 - +0.8
392,041 - -2.4
392,041 - +2.3
392,045 + -0.4
392,045 + -1.7
392,045 + -1.8
392,046 - -0.2
392,057 + -0.6
392,071 + +2.1
392,072 - -0.6
392,072 - +0.5
392,073 + -0.0
392,073 + +0.0
392,074 + +2.3
392,074 + +1.2
392,074 + +0.1
392,074 + -3.0
392,074 + -0.7
392,074 + -0.1
392,074 + -0.3
392,074 + +1.1
392,074 + +3.2
392,075 - -1.3
392,075 - -0.2
392,075 - -1.6
392,075 - +1.9
392,075 - -0.3
392,075 - +1.0
392,075 - +1.0
392,075 - +1.6
392,175 + IAI47_01790 0.12 +0.4
392,175 + IAI47_01790 0.12 +1.4
392,175 + IAI47_01790 0.12 +0.9
392,197 + IAI47_01790 0.15 +0.4
392,197 + IAI47_01790 0.15 +1.1
392,198 - IAI47_01790 0.15 +0.7
392,198 - IAI47_01790 0.15 -1.0
392,282 + IAI47_01790 0.26 +1.4
392,282 + IAI47_01790 0.26 +0.6
392,282 + IAI47_01790 0.26 +2.8
392,283 - IAI47_01790 0.26 -0.5
392,283 - IAI47_01790 0.26 -0.5
392,283 - IAI47_01790 0.26 +1.1
392,283 - IAI47_01790 0.26 +1.0
392,388 + IAI47_01790 0.40 -1.1
392,388 + IAI47_01790 0.40 -2.6
392,388 + IAI47_01790 0.40 -1.6
392,389 - IAI47_01790 0.40 +0.5
392,439 + IAI47_01790 0.46 +0.8
392,440 - IAI47_01790 0.46 -0.8
392,478 + IAI47_01790 0.51 -0.3
392,478 + IAI47_01790 0.51 +1.2
392,573 + IAI47_01790 0.63 +0.2
392,573 + IAI47_01790 0.63 +1.1
392,574 - IAI47_01790 0.64 +0.7
392,574 - IAI47_01790 0.64 -0.2
392,574 - IAI47_01790 0.64 -2.4
392,574 - IAI47_01790 0.64 -1.0
392,655 - IAI47_01790 0.74 +1.6
392,686 + IAI47_01790 0.78 +1.0
392,686 + IAI47_01790 0.78 -1.1
392,696 + IAI47_01790 0.79 -1.5
392,696 + IAI47_01790 0.79 -1.2
392,696 + IAI47_01790 0.79 -0.7
392,696 + IAI47_01790 0.79 -0.1
392,696 + IAI47_01790 0.79 -0.7
392,696 + IAI47_01790 0.79 -0.5
392,696 + IAI47_01790 0.79 +1.1
392,696 + IAI47_01790 0.79 +2.0
392,696 + IAI47_01790 0.79 +0.9
392,696 + IAI47_01790 0.79 +0.6
392,696 + IAI47_01790 0.79 -0.2
392,696 + IAI47_01790 0.79 -0.7
392,696 + IAI47_01790 0.79 +1.2
392,697 - IAI47_01790 0.79 +0.5
392,697 - IAI47_01790 0.79 -1.8
392,697 - IAI47_01790 0.79 -0.5
392,697 - IAI47_01790 0.79 +0.4
392,697 - IAI47_01790 0.79 +0.3
392,697 - IAI47_01790 0.79 -0.1
392,697 - IAI47_01790 0.79 -0.6
392,697 - IAI47_01790 0.79 +0.4
392,697 - IAI47_01790 0.79 -0.1
392,793 + +0.2
392,793 + -2.3
392,793 + +0.2
392,794 - -2.3
392,794 - -0.2
392,826 + -1.2
392,827 - -0.6
392,836 - -0.2
392,895 + -0.6
392,895 + +1.4
392,895 + -0.6
392,895 + -0.4
392,895 + +1.6
392,896 - +0.5
392,896 - -0.7
392,896 - -0.2
392,896 - +0.3
392,896 - -1.9
392,896 - -0.4
392,896 - -1.5
392,896 - -0.4
392,896 - -2.0
392,928 + +0.1
392,936 + -1.4
392,936 + -0.2
392,937 - +2.6
392,937 - +0.2
392,952 + -0.8
392,953 - -3.2
392,953 - -0.2
392,953 - -0.2
392,964 + +0.2
392,964 + -0.3
392,964 + +0.5
392,991 + +0.5
392,991 + +1.6
392,991 + +2.1
392,991 + -1.8
392,991 + +1.1
392,991 + +0.1
392,991 + -0.0
392,991 + +0.4
392,991 + -0.2
392,991 + +0.5
392,991 + -1.5
392,991 + +0.7
392,991 + +0.7
392,991 + +1.0
392,991 + +0.5
392,991 + +0.0
392,991 + -0.9
392,991 + +1.0
392,991 + -1.6
392,991 + -1.4
392,992 - +0.6
392,992 - +0.1
392,992 - -0.9
392,992 - -0.0
392,992 - -3.2
392,992 - +0.6
392,992 - -0.9
392,992 - -0.5
392,992 - +0.8
392,992 - -0.3
392,992 - -1.2
392,992 - -1.6
392,992 - -0.1
393,020 + -1.5
393,020 + -1.6
393,026 + +0.3
393,026 + -1.9
393,026 + -0.9
393,026 + +2.2
393,026 + -0.1
393,026 + +0.3
393,026 + +0.3
393,026 + +1.4
393,027 - +0.8
393,027 - +0.8
393,027 - -0.9
393,027 - +0.5
393,027 - -0.7
393,027 - -0.5
393,027 - -0.9
393,027 - +0.7
393,040 - +1.7
393,040 - +1.0

Or see this region's nucleotide sequence