Strain Fitness in Pantoea sp. MT58 around IAI47_21845

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
117,922	-		IAI47_21835	0.77	+0.0
118,080	+				+0.6
118,105	+				-2.6
118,105	+				+1.2
118,124	+				+1.4
118,124	+				-2.4
118,125	-				-0.7
118,125	-				+0.1
118,125	-				+0.4
118,241	+				-1.3
118,246	-				+0.1
118,280	-				+4.1
118,313	-				-1.4
118,317	+				-0.6
118,365	+				+2.0
118,386	+				-1.2
118,386	+				-1.1
118,386	+				-2.7
118,386	+				-0.7
118,386	+				+1.0
118,387	-				+0.4
118,387	-				-0.7
118,395	+				+1.4
118,428	+		IAI47_21840	0.15	-0.1
118,428	+		IAI47_21840	0.15	+0.3
118,428	+		IAI47_21840	0.15	+0.0
118,429	-		IAI47_21840	0.15	-0.9
118,461	+		IAI47_21840	0.21	+1.2
118,461	+		IAI47_21840	0.21	-0.5
118,461	+		IAI47_21840	0.21	-0.5
118,461	+		IAI47_21840	0.21	+0.0
118,461	+		IAI47_21840	0.21	+0.9
118,461	+		IAI47_21840	0.21	-0.8
118,461	+		IAI47_21840	0.21	-0.6
118,461	+		IAI47_21840	0.21	+2.0
118,461	+		IAI47_21840	0.21	+1.9
118,461	+		IAI47_21840	0.21	+0.4
118,461	+		IAI47_21840	0.21	-1.5
118,462	-		IAI47_21840	0.21	+0.1
118,462	-		IAI47_21840	0.21	+1.4
118,462	-		IAI47_21840	0.21	+0.6
118,462	-		IAI47_21840	0.21	+0.9
118,462	-		IAI47_21840	0.21	-0.4
118,462	-		IAI47_21840	0.21	+0.9
118,462	-		IAI47_21840	0.21	-0.1
118,462	-		IAI47_21840	0.21	+0.2
118,462	-		IAI47_21840	0.21	+0.1
118,462	-		IAI47_21840	0.21	+0.7
118,470	-		IAI47_21840	0.22	-0.2
118,489	+		IAI47_21840	0.26	-0.4
118,489	+		IAI47_21840	0.26	+0.9
118,490	-		IAI47_21840	0.26	+0.9
118,491	+		IAI47_21840	0.26	-0.6
118,491	+		IAI47_21840	0.26	+0.7
118,492	-		IAI47_21840	0.26	-1.3
118,492	-		IAI47_21840	0.26	+0.5
118,492	-		IAI47_21840	0.26	-0.1
118,492	-		IAI47_21840	0.26	-0.2
118,508	+		IAI47_21840	0.29	+0.1
118,508	+		IAI47_21840	0.29	+1.1
118,508	+		IAI47_21840	0.29	+1.9
118,508	+		IAI47_21840	0.29	-1.1
118,508	+		IAI47_21840	0.29	-1.7
118,508	+		IAI47_21840	0.29	+0.7
118,509	-		IAI47_21840	0.29	-0.7
118,509	-		IAI47_21840	0.29	-1.1
118,512	+		IAI47_21840	0.30	-1.1
118,513	-		IAI47_21840	0.30	+1.3
118,513	-		IAI47_21840	0.30	+2.3
118,721	+		IAI47_21840	0.68	+0.3
118,721	+		IAI47_21840	0.68	+0.1
118,721	+		IAI47_21840	0.68	-0.6
118,721	+		IAI47_21840	0.68	+1.1
118,722	-		IAI47_21840	0.68	-0.7
118,722	-		IAI47_21840	0.68	+0.1
118,722	-		IAI47_21840	0.68	+1.1
118,722	-		IAI47_21840	0.68	-0.3
118,735	-		IAI47_21840	0.71	-1.3
118,735	-		IAI47_21840	0.71	-0.2
118,746	+		IAI47_21840	0.73	-1.3
118,776	+		IAI47_21840	0.78	+1.9
118,794	+		IAI47_21840	0.82	+0.7
118,795	-		IAI47_21840	0.82	-0.8
118,845	+				-0.7
118,846	-				-1.4
118,878	+				-1.4
118,879	-				-0.5
118,879	-				-0.1
118,891	+				-1.3
118,892	-				-2.0
118,915	+				-0.1
118,915	+				-1.4
118,915	+				+0.9
118,915	+				+0.4
118,915	+				-0.9
118,915	+				+0.5
118,915	+				+0.6
118,915	+				-1.6
118,915	+				+0.4
118,915	+				-1.1
118,915	+				+0.9
118,915	+				+0.0
118,915	+				-0.6
118,915	+				-0.1
118,916	-				-0.1
118,916	-				-1.0
118,916	-				+1.1
118,916	-				+0.6
118,916	-				+1.6
118,916	-				-1.1
118,916	-				-0.0
118,916	-				+1.1
118,916	-				-2.4
118,916	-				-0.3
118,923	+				+0.6
118,923	+				-1.9
118,923	+				+0.6
118,923	+				-1.6
118,923	+				-0.4
118,923	+				-1.1
119,014	+				+1.0
119,014	+				+0.0
119,014	+				+1.0
119,014	+				-1.6
119,015	-				+1.3
119,015	-				+1.7
119,015	-				-1.4
119,046	+		IAI47_21845	0.11	-1.5
119,047	-		IAI47_21845	0.11	+0.7
119,084	+		IAI47_21845	0.14	-0.7
119,084	+		IAI47_21845	0.14	+1.8
119,085	-		IAI47_21845	0.14	-0.8
119,086	+		IAI47_21845	0.14	-2.7
119,086	+		IAI47_21845	0.14	-0.1
119,087	-		IAI47_21845	0.14	-0.7
119,087	-		IAI47_21845	0.14	+1.1
119,170	+		IAI47_21845	0.21	-0.6
119,262	+		IAI47_21845	0.29	+0.3
119,262	+		IAI47_21845	0.29	-2.0
119,365	+		IAI47_21845	0.38	-0.8
119,366	-		IAI47_21845	0.38	+0.4
119,366	-		IAI47_21845	0.38	-0.4
119,366	-		IAI47_21845	0.38	+2.3
119,366	-		IAI47_21845	0.38	+1.4
119,401	+		IAI47_21845	0.41	-1.1
119,401	+		IAI47_21845	0.41	-1.3
119,402	-		IAI47_21845	0.41	-0.7
119,489	+		IAI47_21845	0.48	+0.0
119,490	-		IAI47_21845	0.48	-1.0
119,580	+		IAI47_21845	0.56	+1.3
119,581	-		IAI47_21845	0.56	-1.9
119,581	-		IAI47_21845	0.56	-0.6
119,581	-		IAI47_21845	0.56	+0.3
119,607	+		IAI47_21845	0.58	-0.4
119,607	+		IAI47_21845	0.58	-1.1
119,607	+		IAI47_21845	0.58	-0.1
119,607	+		IAI47_21845	0.58	-0.1
119,607	+		IAI47_21845	0.58	-0.1
119,607	+		IAI47_21845	0.58	-2.1
119,607	+		IAI47_21845	0.58	-0.9
119,607	+		IAI47_21845	0.58	-1.7
119,607	+		IAI47_21845	0.58	-0.7
119,607	+		IAI47_21845	0.58	-0.7
119,608	-		IAI47_21845	0.58	+0.7
119,608	-		IAI47_21845	0.58	+1.5
119,608	-		IAI47_21845	0.58	-1.3
119,608	-		IAI47_21845	0.58	+2.9
119,608	-		IAI47_21845	0.58	-1.5
119,608	-		IAI47_21845	0.58	-1.4
119,608	-		IAI47_21845	0.58	+0.5
119,608	-		IAI47_21845	0.58	-0.8
119,608	-		IAI47_21845	0.58	-0.1
119,610	+		IAI47_21845	0.58	-2.3
119,611	-		IAI47_21845	0.58	+1.1
119,611	-		IAI47_21845	0.58	+0.9
119,611	-		IAI47_21845	0.58	+1.3
119,611	-		IAI47_21845	0.58	+2.3
119,647	+		IAI47_21845	0.61	-1.8
119,647	+		IAI47_21845	0.61	-0.1
119,647	+		IAI47_21845	0.61	-1.8
119,647	+		IAI47_21845	0.61	+1.7
119,647	+		IAI47_21845	0.61	-0.0
119,647	+		IAI47_21845	0.61	-0.4
119,648	-		IAI47_21845	0.61	+1.0
119,648	-		IAI47_21845	0.61	-1.0
119,648	-		IAI47_21845	0.61	+1.9
119,648	-		IAI47_21845	0.61	-0.7
119,736	+		IAI47_21845	0.69	-0.5
119,736	+		IAI47_21845	0.69	+0.6
119,736	+		IAI47_21845	0.69	-1.0
119,736	+		IAI47_21845	0.69	+0.7
119,737	-		IAI47_21845	0.69	+0.9
119,737	-		IAI47_21845	0.69	+0.7
119,758	+		IAI47_21845	0.71	+1.8
119,778	-		IAI47_21845	0.72	+1.2
119,799	+		IAI47_21845	0.74	+1.9
119,799	+		IAI47_21845	0.74	+0.9
119,799	+		IAI47_21845	0.74	-0.1
119,799	+		IAI47_21845	0.74	+1.0
119,800	-		IAI47_21845	0.74	-0.1
119,800	-		IAI47_21845	0.74	-0.5
119,800	-		IAI47_21845	0.74	-1.4
119,800	-		IAI47_21845	0.74	+0.9
119,800	-		IAI47_21845	0.74	+2.4
119,860	+		IAI47_21845	0.79	-0.3
119,860	+		IAI47_21845	0.79	+0.9
119,860	+		IAI47_21845	0.79	+0.1
119,861	-		IAI47_21845	0.79	-0.7
119,861	-		IAI47_21845	0.79	-0.6
119,877	+		IAI47_21845	0.81	+0.3
119,881	+		IAI47_21845	0.81	-2.0
119,881	+		IAI47_21845	0.81	-0.1
119,882	-		IAI47_21845	0.81	-0.3
119,882	-		IAI47_21845	0.81	+1.1
119,882	-		IAI47_21845	0.81	+0.4
119,882	-		IAI47_21845	0.81	-0.1
119,991	+				+0.2
119,991	+				+0.5
119,992	-				-1.0
119,992	-				+2.4
120,003	+				-0.0
120,003	+				-2.0
120,003	+				+1.3
120,003	+				-0.9
120,003	+				+0.1
120,004	-				+0.4
120,004	-				+2.4
120,004	-				-0.8
120,004	-				+1.4
120,004	-				+0.6
120,004	-				+1.4
120,004	-				-0.5
120,004	-				-0.7
120,004	-				-0.7
120,004	-				+0.4
120,004	-				-0.5
120,006	+				-1.1
120,007	-				+0.6
120,007	-				+0.0
120,007	-				+2.4
120,073	-				-1.5
120,109	+				-0.2
120,109	+				+1.7
120,109	+				-0.3
120,110	-				+0.4
120,110	-				-0.2
120,110	-				+2.0
120,110	-				-0.6
120,110	-				+0.1
120,110	-				+0.4
120,114	+				-1.7
120,114	+				-1.0
120,114	+				-0.3
120,114	+				-0.0
120,114	+				-0.4
120,114	+				-0.9
120,114	+				+0.3
120,115	-				+0.9
120,115	-				+0.2
120,115	-				-0.5
120,115	-				+0.9
120,115	-				-0.3
120,160	+				+0.9
120,160	+				+0.2
120,160	+				-0.2
120,161	-				+0.3
120,161	-				-0.9
120,172	+				+1.1
120,172	+				-0.7
120,172	+				+2.4
120,185	-				-2.0
120,220	+				+0.3
120,220	+				+2.0
120,220	+				-0.1
120,221	-				-1.3
120,221	-				-0.4
120,221	-				-1.8
120,221	-				-1.3
120,221	-				+0.2
120,260	+		IAI47_21850	0.12	+1.8
120,260	+		IAI47_21850	0.12	+0.7
120,265	+		IAI47_21850	0.12	+0.3
120,266	-		IAI47_21850	0.13	-1.1
120,291	+		IAI47_21850	0.15	+1.3
120,291	+		IAI47_21850	0.15	-0.1
120,291	+		IAI47_21850	0.15	-1.1
120,292	-		IAI47_21850	0.15	-0.6
120,297	+		IAI47_21850	0.16	+1.1
120,297	+		IAI47_21850	0.16	-0.2
120,297	+		IAI47_21850	0.16	-0.6
120,298	-		IAI47_21850	0.16	+0.9
120,298	-		IAI47_21850	0.16	+1.4
120,298	-		IAI47_21850	0.16	-0.6
120,298	-		IAI47_21850	0.16	-0.6
120,298	-		IAI47_21850	0.16	-0.3
120,298	-		IAI47_21850	0.16	-0.9
120,343	+		IAI47_21850	0.20	+0.1
120,343	+		IAI47_21850	0.20	-0.3
120,343	+		IAI47_21850	0.20	+0.9
120,343	+		IAI47_21850	0.20	+1.3
120,343	+		IAI47_21850	0.20	+2.2
120,343	+		IAI47_21850	0.20	-1.9
120,343	+		IAI47_21850	0.20	-0.9
120,343	+		IAI47_21850	0.20	+1.6
120,344	-		IAI47_21850	0.20	-1.1
120,344	-		IAI47_21850	0.20	+0.5
120,344	-		IAI47_21850	0.20	-1.3
120,358	-		IAI47_21850	0.22	-2.0
120,358	-		IAI47_21850	0.22	-2.0
120,427	+		IAI47_21850	0.29	-0.4
120,451	-		IAI47_21850	0.31	-0.5
120,468	+		IAI47_21850	0.33	-0.6
120,468	+		IAI47_21850	0.33	-0.3
120,468	+		IAI47_21850	0.33	-1.1
120,468	+		IAI47_21850	0.33	-0.0
120,468	+		IAI47_21850	0.33	+0.4
120,468	+		IAI47_21850	0.33	+3.3
120,469	-		IAI47_21850	0.33	-0.9
120,469	-		IAI47_21850	0.33	+1.9
120,469	-		IAI47_21850	0.33	-1.1
120,469	-		IAI47_21850	0.33	-0.1
120,469	-		IAI47_21850	0.33	-0.1
120,469	-		IAI47_21850	0.33	-0.5
120,473	-		IAI47_21850	0.33	-1.9
120,473	-		IAI47_21850	0.33	+0.3
120,473	-		IAI47_21850	0.33	+2.5
120,481	+		IAI47_21850	0.34	+1.1
120,482	-		IAI47_21850	0.34	-0.6
120,581	-		IAI47_21850	0.44	+0.4
120,581	-		IAI47_21850	0.44	+1.2
120,581	-		IAI47_21850	0.44	+0.1
120,581	-		IAI47_21850	0.44	-2.4
120,585	+		IAI47_21850	0.44	-1.7
120,585	+		IAI47_21850	0.44	-0.7
120,585	+		IAI47_21850	0.44	-1.6
120,585	+		IAI47_21850	0.44	-1.3
120,585	+		IAI47_21850	0.44	-2.5
120,585	+		IAI47_21850	0.44	+2.0
120,586	-		IAI47_21850	0.44	-0.2
120,586	-		IAI47_21850	0.44	+1.5
120,586	-		IAI47_21850	0.44	-0.4
120,586	-		IAI47_21850	0.44	+1.2
120,634	+		IAI47_21850	0.49	+2.4
120,634	+		IAI47_21850	0.49	-1.0
120,634	+		IAI47_21850	0.49	-2.2
120,641	+		IAI47_21850	0.50	+1.0
120,670	+		IAI47_21850	0.53	+1.3
120,670	+		IAI47_21850	0.53	-0.3
120,670	+		IAI47_21850	0.53	-1.1
120,670	+		IAI47_21850	0.53	-0.6
120,670	+		IAI47_21850	0.53	-0.6
120,670	+		IAI47_21850	0.53	+1.4
120,670	+		IAI47_21850	0.53	-0.7
120,670	+		IAI47_21850	0.53	-1.9
120,671	-		IAI47_21850	0.53	+0.3
120,671	-		IAI47_21850	0.53	+2.0
120,671	-		IAI47_21850	0.53	-0.1
120,671	-		IAI47_21850	0.53	+2.4
120,671	-		IAI47_21850	0.53	+0.9
120,671	-		IAI47_21850	0.53	+1.4
120,671	-		IAI47_21850	0.53	+0.3
120,671	-		IAI47_21850	0.53	+0.4
120,673	+		IAI47_21850	0.53	+0.9
120,673	+		IAI47_21850	0.53	-0.6
120,673	+		IAI47_21850	0.53	-0.7
120,673	+		IAI47_21850	0.53	+0.5
120,673	+		IAI47_21850	0.53	-1.6
120,673	+		IAI47_21850	0.53	-0.5
120,674	-		IAI47_21850	0.53	+0.5
120,674	-		IAI47_21850	0.53	+0.1
120,674	-		IAI47_21850	0.53	-0.2
120,674	-		IAI47_21850	0.53	-1.0
120,729	+		IAI47_21850	0.59	+1.4
120,729	+		IAI47_21850	0.59	-0.9
120,729	+		IAI47_21850	0.59	-2.1
120,729	+		IAI47_21850	0.59	-0.1
120,729	+		IAI47_21850	0.59	+0.4
120,729	+		IAI47_21850	0.59	-0.7
120,729	+		IAI47_21850	0.59	-1.7
120,729	+		IAI47_21850	0.59	-0.6
120,729	+		IAI47_21850	0.59	+0.0
120,730	-		IAI47_21850	0.59	-0.4
120,730	-		IAI47_21850	0.59	-1.0
120,730	-		IAI47_21850	0.59	+0.4
120,730	-		IAI47_21850	0.59	-0.3
120,730	-		IAI47_21850	0.59	-1.0
120,730	-		IAI47_21850	0.59	+0.6
120,730	-		IAI47_21850	0.59	-0.7
120,730	-		IAI47_21850	0.59	-0.3
120,748	+		IAI47_21850	0.60	-1.4
120,749	-		IAI47_21850	0.61	-0.5
120,749	-		IAI47_21850	0.61	-0.1
120,749	-		IAI47_21850	0.61	-0.1
120,749	-		IAI47_21850	0.61	+0.6
120,910	+		IAI47_21850	0.77	-0.0
120,940	+		IAI47_21850	0.80	+0.7
120,940	+		IAI47_21850	0.80	-0.9
120,940	+		IAI47_21850	0.80	-1.3
120,940	+		IAI47_21850	0.80	-1.0
120,941	-		IAI47_21850	0.80	+1.2
120,941	-		IAI47_21850	0.80	-0.4
120,941	-		IAI47_21850	0.80	+0.8
120,987	+		IAI47_21850	0.84	-0.0
120,987	+		IAI47_21850	0.84	-0.3
120,987	+		IAI47_21850	0.84	+0.2
120,988	-		IAI47_21850	0.84	+0.6
121,009	+		IAI47_21850	0.86	+0.7
121,009	+		IAI47_21850	0.86	-2.0
121,009	+		IAI47_21850	0.86	+0.0
121,009	+		IAI47_21850	0.86	-1.1
121,010	-		IAI47_21850	0.87	+0.3
121,010	-		IAI47_21850	0.87	+0.6
121,010	-		IAI47_21850	0.87	+0.7
121,010	-		IAI47_21850	0.87	+0.1
121,044	-				+0.3