Strain Fitness in Pantoea sp. MT58 around IAI47_16615

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,519,489	+		IAI47_16605	0.38	-1.1
3,519,489	+		IAI47_16605	0.38	-0.1
3,519,489	+		IAI47_16605	0.38	-0.4
3,519,490	-		IAI47_16605	0.38	+0.1
3,519,490	-		IAI47_16605	0.38	+1.7
3,519,490	-		IAI47_16605	0.38	-1.1
3,519,490	-		IAI47_16605	0.38	+0.7
3,519,490	-		IAI47_16605	0.38	-0.5
3,519,490	-		IAI47_16605	0.38	+1.1
3,519,501	+		IAI47_16605	0.39	-0.3
3,519,501	+		IAI47_16605	0.39	-1.2
3,519,501	+		IAI47_16605	0.39	+0.0
3,519,501	+		IAI47_16605	0.39	-0.4
3,519,501	+		IAI47_16605	0.39	+2.0
3,519,501	+		IAI47_16605	0.39	+0.2
3,519,501	+		IAI47_16605	0.39	+1.9
3,519,501	+		IAI47_16605	0.39	+0.1
3,519,501	+		IAI47_16605	0.39	+0.3
3,519,502	-		IAI47_16605	0.39	-1.5
3,519,502	-		IAI47_16605	0.39	+1.1
3,519,502	-		IAI47_16605	0.39	+0.3
3,519,502	-		IAI47_16605	0.39	-0.2
3,519,502	-		IAI47_16605	0.39	+1.1
3,519,505	+		IAI47_16605	0.39	+0.4
3,519,506	-		IAI47_16605	0.40	-0.6
3,519,506	-		IAI47_16605	0.40	-1.4
3,519,506	-		IAI47_16605	0.40	-0.4
3,519,506	-		IAI47_16605	0.40	-0.2
3,519,511	+		IAI47_16605	0.40	+2.1
3,519,511	+		IAI47_16605	0.40	+1.6
3,519,512	-		IAI47_16605	0.40	+1.9
3,519,512	-		IAI47_16605	0.40	+0.4
3,519,520	+		IAI47_16605	0.41	-0.8
3,519,521	-		IAI47_16605	0.41	-1.3
3,519,537	+		IAI47_16605	0.42	+0.9
3,519,537	+		IAI47_16605	0.42	+0.2
3,519,537	+		IAI47_16605	0.42	-1.8
3,519,538	-		IAI47_16605	0.42	-1.0
3,519,538	-		IAI47_16605	0.42	+0.3
3,519,545	+		IAI47_16605	0.43	+0.5
3,519,545	+		IAI47_16605	0.43	-1.5
3,519,546	-		IAI47_16605	0.43	+0.0
3,519,546	-		IAI47_16605	0.43	-3.0
3,519,546	-		IAI47_16605	0.43	-0.0
3,519,546	-		IAI47_16605	0.43	-1.1
3,519,546	-		IAI47_16605	0.43	-1.4
3,519,550	+		IAI47_16605	0.43	+0.3
3,519,550	+		IAI47_16605	0.43	-0.9
3,519,550	+		IAI47_16605	0.43	+0.8
3,519,550	+		IAI47_16605	0.43	+0.4
3,519,550	+		IAI47_16605	0.43	+0.1
3,519,550	+		IAI47_16605	0.43	+1.7
3,519,550	+		IAI47_16605	0.43	-2.7
3,519,550	+		IAI47_16605	0.43	-1.9
3,519,550	+		IAI47_16605	0.43	-1.1
3,519,550	+		IAI47_16605	0.43	-1.2
3,519,550	+		IAI47_16605	0.43	-1.6
3,519,550	+		IAI47_16605	0.43	+0.0
3,519,550	+		IAI47_16605	0.43	+0.5
3,519,551	-		IAI47_16605	0.43	-0.1
3,519,551	-		IAI47_16605	0.43	+0.9
3,519,551	-		IAI47_16605	0.43	-1.4
3,519,551	-		IAI47_16605	0.43	-0.7
3,519,551	-		IAI47_16605	0.43	+0.9
3,519,551	-		IAI47_16605	0.43	+1.1
3,519,551	-		IAI47_16605	0.43	-0.5
3,519,551	-		IAI47_16605	0.43	-1.9
3,519,551	-		IAI47_16605	0.43	-2.0
3,519,551	-		IAI47_16605	0.43	-0.0
3,519,551	-		IAI47_16605	0.43	-1.0
3,519,581	-		IAI47_16605	0.46	-1.1
3,519,649	+		IAI47_16605	0.51	-0.4
3,519,649	+		IAI47_16605	0.51	-0.8
3,519,650	-		IAI47_16605	0.51	-0.4
3,519,650	-		IAI47_16605	0.51	-0.0
3,519,650	-		IAI47_16605	0.51	+0.8
3,519,650	-		IAI47_16605	0.51	+0.4
3,519,650	-		IAI47_16605	0.51	+2.1
3,519,659	+		IAI47_16605	0.52	-0.3
3,519,659	+		IAI47_16605	0.52	-0.2
3,519,660	-		IAI47_16605	0.52	+1.7
3,519,660	-		IAI47_16605	0.52	+0.0
3,519,684	+		IAI47_16605	0.54	-0.7
3,519,685	-		IAI47_16605	0.54	+0.8
3,519,693	+		IAI47_16605	0.55	-1.4
3,519,694	-		IAI47_16605	0.55	-1.2
3,519,734	-		IAI47_16605	0.58	+0.1
3,519,734	-		IAI47_16605	0.58	+0.2
3,519,734	-		IAI47_16605	0.58	+0.5
3,519,734	-		IAI47_16605	0.58	+0.4
3,519,734	-		IAI47_16605	0.58	-1.4
3,519,738	+		IAI47_16605	0.58	+2.5
3,519,738	+		IAI47_16605	0.58	-0.0
3,519,739	-		IAI47_16605	0.58	+0.6
3,519,739	-		IAI47_16605	0.58	-1.9
3,519,749	+		IAI47_16605	0.59	-0.3
3,519,749	+		IAI47_16605	0.59	-0.6
3,519,749	+		IAI47_16605	0.59	+0.1
3,519,749	+		IAI47_16605	0.59	-0.5
3,519,749	+		IAI47_16605	0.59	-1.0
3,519,749	+		IAI47_16605	0.59	-0.5
3,519,749	+		IAI47_16605	0.59	-1.0
3,519,749	+		IAI47_16605	0.59	+0.1
3,519,749	+		IAI47_16605	0.59	-1.5
3,519,749	+		IAI47_16605	0.59	-2.2
3,519,750	-		IAI47_16605	0.59	-0.3
3,519,750	-		IAI47_16605	0.59	-1.2
3,519,750	-		IAI47_16605	0.59	+0.8
3,519,750	-		IAI47_16605	0.59	-0.4
3,519,750	-		IAI47_16605	0.59	-0.9
3,519,750	-		IAI47_16605	0.59	-1.3
3,519,750	-		IAI47_16605	0.59	-2.8
3,519,750	-		IAI47_16605	0.59	-0.7
3,519,750	-		IAI47_16605	0.59	-1.6
3,519,750	-		IAI47_16605	0.59	-2.0
3,519,751	+		IAI47_16605	0.59	+0.7
3,519,751	+		IAI47_16605	0.59	-0.7
3,519,796	+		IAI47_16605	0.63	-0.5
3,519,796	+		IAI47_16605	0.63	+0.6
3,519,797	-		IAI47_16605	0.63	+0.2
3,519,816	+		IAI47_16605	0.65	-0.6
3,519,816	+		IAI47_16605	0.65	-0.8
3,519,816	+		IAI47_16605	0.65	+2.7
3,519,816	+		IAI47_16605	0.65	+0.4
3,519,816	+		IAI47_16605	0.65	-0.8
3,519,816	+				+0.4
3,519,816	+		IAI47_16605	0.65	+1.1
3,519,816	+		IAI47_16605	0.65	-0.9
3,519,817	-		IAI47_16605	0.65	+0.6
3,519,817	-		IAI47_16605	0.65	-1.0
3,519,817	-		IAI47_16605	0.65	-1.2
3,519,877	+		IAI47_16605	0.70	+1.8
3,519,877	+		IAI47_16605	0.70	-0.0
3,519,877	+		IAI47_16605	0.70	-0.9
3,519,878	-		IAI47_16605	0.70	+0.7
3,519,885	+		IAI47_16605	0.70	+0.7
3,519,886	-		IAI47_16605	0.70	+0.6
3,519,886	-		IAI47_16605	0.70	+0.7
3,519,898	+		IAI47_16605	0.71	+0.5
3,519,899	-		IAI47_16605	0.71	+2.0
3,519,901	+		IAI47_16605	0.72	+1.4
3,519,901	+		IAI47_16605	0.72	+0.0
3,519,901	+		IAI47_16605	0.72	+1.5
3,519,902	-		IAI47_16605	0.72	+0.2
3,519,920	+		IAI47_16605	0.73	-0.3
3,519,920	+		IAI47_16605	0.73	+1.7
3,519,921	-		IAI47_16605	0.73	-1.0
3,519,938	+		IAI47_16605	0.75	+0.1
3,519,939	-		IAI47_16605	0.75	+0.5
3,519,979	+		IAI47_16605	0.78	-1.6
3,519,980	-		IAI47_16605	0.78	-0.8
3,520,009	+		IAI47_16605	0.80	-0.5
3,520,010	-		IAI47_16605	0.80	+0.9
3,520,010	-		IAI47_16605	0.80	-0.1
3,520,016	-		IAI47_16605	0.81	+1.1
3,520,016	-		IAI47_16605	0.81	-1.1
3,520,043	+		IAI47_16605	0.83	+0.9
3,520,046	-		IAI47_16605	0.83	+1.1
3,520,075	+		IAI47_16605	0.86	+0.0
3,520,075	+		IAI47_16605	0.86	+0.4
3,520,075	+		IAI47_16605	0.86	-0.1
3,520,076	-		IAI47_16605	0.86	-0.2
3,520,076	-		IAI47_16605	0.86	-0.4
3,520,076	-		IAI47_16605	0.86	+2.9
3,520,115	-		IAI47_16605	0.89	+0.7
3,520,167	-				-0.4
3,520,167	-				-1.1
3,520,198	-				+0.6
3,520,205	+				-1.0
3,520,205	+				-0.1
3,520,205	+				+1.5
3,520,205	+				+0.5
3,520,205	+				+0.1
3,520,206	-				-0.5
3,520,206	-				+0.1
3,520,208	-				-0.0
3,520,208	-				+0.4
3,520,208	-				+0.5
3,520,208	-				-0.4
3,520,243	+				-0.9
3,520,244	-				-0.5
3,520,250	+				-0.1
3,520,256	+				+0.7
3,520,257	-				+0.7
3,520,257	-				-0.7
3,520,272	+				-1.0
3,520,272	+				+1.6
3,520,272	+				+0.5
3,520,273	-				-0.1
3,520,273	-				-0.2
3,520,273	-				-0.3
3,520,273	-				+0.9
3,520,273	-				-0.2
3,520,273	-				+0.8
3,520,294	-				-0.7
3,520,294	-				+1.7
3,520,299	+				-0.7
3,520,300	-				+0.1
3,520,300	-				-0.5
3,520,306	-				-2.4
3,520,306	-				+0.4
3,520,306	-				+0.2
3,520,311	+				+0.3
3,520,312	-				+1.9
3,520,317	+				-1.5
3,520,317	+				+1.7
3,520,318	-				-1.3
3,520,318	-				+0.9
3,520,318	-				-0.3
3,520,327	-		IAI47_16610	0.12	+1.0
3,520,341	-		IAI47_16610	0.20	-0.7
3,520,341	-		IAI47_16610	0.20	-1.7
3,520,384	+		IAI47_16610	0.47	+0.2
3,520,385	-		IAI47_16610	0.48	+3.0
3,520,385	-		IAI47_16610	0.48	-1.6
3,520,385	-		IAI47_16610	0.48	+2.7
3,520,430	+		IAI47_16610	0.75	-2.8
3,520,431	-		IAI47_16610	0.76	-0.7
3,520,431	-		IAI47_16610	0.76	-0.2
3,520,431	-		IAI47_16610	0.76	-1.9
3,520,457	+				+0.0
3,520,457	+				-0.3
3,520,486	+				+0.7
3,520,486	+				-0.1
3,520,486	+				+0.1
3,520,487	-				-0.4
3,520,487	-				+0.2
3,520,487	-				+1.9
3,520,487	-				+0.1
3,520,497	+				-0.4
3,520,498	-				-2.0
3,520,498	-				-0.1
3,520,498	-				+0.1
3,520,547	+				+0.5
3,520,547	+				+0.0
3,520,547	+				+1.5
3,520,547	+				+0.3
3,520,548	-				+0.0
3,520,548	-				-1.3
3,520,548	-				-1.5
3,520,553	+				-1.5
3,520,553	+				-1.9
3,520,553	+				+1.7
3,520,553	+				-0.4
3,520,556	+				-1.4
3,520,557	-				-1.1
3,520,557	-				-0.1
3,520,557	-				-2.0
3,520,575	-				-2.6
3,520,575	-				+0.9
3,520,575	-				+1.4
3,520,580	+				-0.0
3,520,599	-				+0.1
3,520,599	-				-1.4
3,520,604	+				-1.9
3,520,605	-				+1.3
3,520,619	+				-1.2
3,520,620	-				-0.0
3,520,620	-				+0.1
3,520,625	+				+0.8
3,520,626	-				+0.2
3,520,626	-				+1.4
3,520,646	-				-0.2
3,520,650	+				-0.4
3,520,650	+				-1.0
3,520,650	+				+0.6
3,520,651	-				-0.2
3,520,651	-				-1.5
3,520,651	-				+0.2
3,520,664	+		IAI47_16615	0.10	-0.4
3,520,664	+		IAI47_16615	0.10	+0.1
3,520,664	+		IAI47_16615	0.10	-0.4
3,520,665	-		IAI47_16615	0.10	-0.5
3,520,665	-		IAI47_16615	0.10	-0.1
3,520,665	-		IAI47_16615	0.10	-1.8
3,520,665	-		IAI47_16615	0.10	-0.1
3,520,680	-		IAI47_16615	0.11	-0.9
3,520,709	+		IAI47_16615	0.12	-0.7
3,520,709	+		IAI47_16615	0.12	+1.4
3,520,710	-		IAI47_16615	0.12	+0.5
3,520,710	-		IAI47_16615	0.12	+0.1
3,520,721	+		IAI47_16615	0.13	+0.5
3,520,752	-		IAI47_16615	0.15	+0.1
3,520,752	-		IAI47_16615	0.15	-1.9
3,520,784	+		IAI47_16615	0.16	-0.9
3,520,784	+		IAI47_16615	0.16	+1.0
3,520,785	-		IAI47_16615	0.16	+0.1
3,520,785	-		IAI47_16615	0.16	+0.7
3,520,785	-		IAI47_16615	0.16	-0.2
3,520,791	-		IAI47_16615	0.17	-0.2
3,520,832	+		IAI47_16615	0.19	+2.0
3,520,833	-		IAI47_16615	0.19	+0.3
3,520,833	-		IAI47_16615	0.19	+2.0
3,520,833	-		IAI47_16615	0.19	+1.9
3,520,833	-		IAI47_16615	0.19	-0.5
3,520,833	-		IAI47_16615	0.19	-0.3
3,520,833	-		IAI47_16615	0.19	+0.6
3,520,833	-		IAI47_16615	0.19	-0.1
3,520,838	+		IAI47_16615	0.19	-1.3
3,520,868	+		IAI47_16615	0.21	-1.8
3,520,868	+		IAI47_16615	0.21	-1.5
3,520,869	-		IAI47_16615	0.21	-0.1
3,520,869	-		IAI47_16615	0.21	+0.6
3,520,869	-		IAI47_16615	0.21	+0.7
3,520,869	-		IAI47_16615	0.21	+0.3
3,520,875	-		IAI47_16615	0.21	-1.1
3,520,875	-		IAI47_16615	0.21	+0.9
3,520,877	+		IAI47_16615	0.21	+1.0
3,520,877	+		IAI47_16615	0.21	+0.3
3,520,877	+		IAI47_16615	0.21	-0.6
3,520,877	+		IAI47_16615	0.21	+1.1
3,520,877	+		IAI47_16615	0.21	-0.1
3,520,877	+		IAI47_16615	0.21	-0.7
3,520,878	-		IAI47_16615	0.21	-0.6
3,520,878	-		IAI47_16615	0.21	-0.9
3,520,913	+		IAI47_16615	0.23	-1.1
3,520,913	+		IAI47_16615	0.23	+0.9
3,520,913	+		IAI47_16615	0.23	+0.4
3,520,914	-		IAI47_16615	0.23	+0.9
3,520,914	-		IAI47_16615	0.23	-1.0
3,520,914	-		IAI47_16615	0.23	+0.7
3,520,964	+		IAI47_16615	0.26	-1.8
3,520,964	+		IAI47_16615	0.26	-1.4
3,520,965	-		IAI47_16615	0.26	+0.5
3,520,965	-		IAI47_16615	0.26	-1.3
3,520,965	-		IAI47_16615	0.26	+1.1
3,520,991	+		IAI47_16615	0.27	-0.7
3,520,992	-		IAI47_16615	0.27	-0.6
3,520,992	-		IAI47_16615	0.27	+0.6
3,520,997	+		IAI47_16615	0.28	+2.8
3,521,051	+		IAI47_16615	0.30	-0.2
3,521,051	+		IAI47_16615	0.30	+1.3
3,521,052	-		IAI47_16615	0.30	+0.5
3,521,052	-		IAI47_16615	0.30	-1.2
3,521,052	-		IAI47_16615	0.30	+0.1
3,521,052	-		IAI47_16615	0.30	-1.3
3,521,052	-		IAI47_16615	0.30	-1.8
3,521,052	-		IAI47_16615	0.30	+0.1
3,521,073	+		IAI47_16615	0.32	-0.4
3,521,073	+		IAI47_16615	0.32	+1.7
3,521,073	+		IAI47_16615	0.32	+0.6
3,521,074	-		IAI47_16615	0.32	-1.5
3,521,074	-		IAI47_16615	0.32	+0.8
3,521,096	+		IAI47_16615	0.33	-0.2
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3,523,021	+				-1.6
3,523,021	+				-0.8
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3,523,021	+				-1.3
3,523,022	-				+2.2
3,523,034	+				-0.7
3,523,034	+				-1.0
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3,523,035	-				-0.4
3,523,037	+				-0.1
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3,523,037	+				+0.8
3,523,037	+				+0.2
3,523,037	+				+1.1
3,523,037	+				+0.4
3,523,038	-				-0.6
3,523,038	-				+0.9
3,523,064	+				-0.6
3,523,065	-				+0.0
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3,523,230	-		IAI47_16625	0.18	-0.4
3,523,241	+		IAI47_16625	0.19	+0.3
3,523,242	-		IAI47_16625	0.19	-0.7
3,523,274	+		IAI47_16625	0.22	+1.3
3,523,275	-		IAI47_16625	0.22	-0.3
3,523,292	+		IAI47_16625	0.23	-0.1
3,523,292	+		IAI47_16625	0.23	-1.1
3,523,292	+		IAI47_16625	0.23	-0.6
3,523,293	-		IAI47_16625	0.24	-1.6
3,523,293	-		IAI47_16625	0.24	+0.7
3,523,293	-		IAI47_16625	0.24	-0.1
3,523,293	-		IAI47_16625	0.24	-2.3
3,523,293	-		IAI47_16625	0.24	+0.6
3,523,293	-		IAI47_16625	0.24	+1.4
3,523,293	-		IAI47_16625	0.24	-0.4
3,523,293	-		IAI47_16625	0.24	-1.2
3,523,328	+		IAI47_16625	0.27	+3.4
3,523,353	+		IAI47_16625	0.29	+1.4
3,523,366	+		IAI47_16625	0.30	+1.1