Strain Fitness in Pantoea sp. MT58 around IAI47_15875

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,349,931	+		IAI47_15865	0.90	+1.7
3,349,931	+		IAI47_15865	0.90	+2.4
3,349,931	+		IAI47_15865	0.90	+0.1
3,349,931	+		IAI47_15865	0.90	+0.8
3,349,931	+		IAI47_15865	0.90	+0.8
3,349,932	-		IAI47_15865	0.90	-0.6
3,349,932	-		IAI47_15865	0.90	+0.1
3,349,932	-		IAI47_15865	0.90	+1.7
3,349,932	-		IAI47_15865	0.90	+0.8
3,349,992	+				-2.4
3,349,992	+				+0.2
3,349,992	+				+1.1
3,349,992	+				-0.6
3,349,992	+				+0.2
3,349,993	-				+1.2
3,350,003	+				+0.3
3,350,004	-				-0.4
3,350,030	+				-1.3
3,350,030	+				-0.1
3,350,031	-				-1.4
3,350,036	+				-0.4
3,350,036	+				-0.6
3,350,036	+				-0.6
3,350,036	+				+1.9
3,350,036	-				-1.7
3,350,037	-				-1.3
3,350,037	-				-1.4
3,350,037	-				+1.4
3,350,037	-				+1.4
3,350,037	-				-0.8
3,350,040	+				+2.1
3,350,040	+				+1.3
3,350,040	+				-0.7
3,350,040	+				+0.5
3,350,040	+				-0.5
3,350,040	+				-0.8
3,350,040	+				-1.3
3,350,040	+				+0.3
3,350,040	+				-0.8
3,350,040	+				+1.2
3,350,040	+				-0.8
3,350,040	+				+1.2
3,350,040	+				-0.8
3,350,040	+				-1.1
3,350,040	+				-0.8
3,350,040	+				+0.0
3,350,040	+				-0.5
3,350,041	-				-1.2
3,350,041	-				-0.4
3,350,041	-				+0.0
3,350,041	-				+0.1
3,350,041	-				+0.0
3,350,041	-				+0.7
3,350,041	-				+3.8
3,350,041	-				-0.3
3,350,041	-				+0.8
3,350,051	+				-0.1
3,350,051	+				+2.8
3,350,052	-				+0.4
3,350,052	-				-0.4
3,350,080	+				-1.7
3,350,080	+				-0.3
3,350,080	+				-0.1
3,350,080	+				+0.2
3,350,080	+				-0.8
3,350,080	+				+0.7
3,350,081	-				+1.9
3,350,081	-				-0.1
3,350,095	+				-1.4
3,350,095	+				-1.1
3,350,096	-				+0.6
3,350,096	-				+1.0
3,350,102	-				-1.0
3,350,102	-				-0.4
3,350,102	-				-1.5
3,350,107	-				-0.3
3,350,147	+				+0.1
3,350,148	-				-1.9
3,350,148	-				+1.0
3,350,151	+				+1.1
3,350,152	-				+0.5
3,350,152	-				+1.1
3,350,152	-				+1.1
3,350,172	+				+0.1
3,350,172	+				+0.4
3,350,172	+				+1.5
3,350,173	-				+0.1
3,350,219	-				+2.0
3,350,230	+				+0.8
3,350,230	+				-0.3
3,350,248	+				+0.4
3,350,248	+				-1.1
3,350,248	+				+0.3
3,350,248	+				+0.5
3,350,249	-				-1.2
3,350,276	+				-1.7
3,350,276	+				-0.7
3,350,276	+				-1.0
3,350,276	+				-0.5
3,350,278	+				-1.0
3,350,876	+				+0.3
3,350,876	+				+1.7
3,350,876	+				+0.2
3,350,877	-				-0.1
3,350,877	-				-1.3
3,350,877	-				-0.7
3,350,877	-				+1.2
3,350,879	+				+1.7
3,350,879	+				+0.4
3,350,879	+				-0.1
3,350,879	+				+0.9
3,350,879	+				-1.0
3,350,880	-				+0.2
3,350,880	-				+1.0
3,350,888	+				+0.2
3,350,888	+				-1.4
3,350,888	+				+0.5
3,350,888	+				+0.5
3,350,888	+				-1.1
3,350,888	+				-1.5
3,350,889	-				-0.3
3,350,889	-				-0.3
3,350,889	-				+0.0
3,350,889	-				+0.2
3,350,889	-				+1.4
3,350,958	-		IAI47_15875	0.10	+1.1
3,350,958	-		IAI47_15875	0.10	+0.1
3,350,965	+		IAI47_15875	0.11	+0.9
3,350,965	+		IAI47_15875	0.11	-0.1
3,350,965	+		IAI47_15875	0.11	+1.7
3,350,965	+		IAI47_15875	0.11	-0.8
3,350,966	-		IAI47_15875	0.11	+1.9
3,350,980	+		IAI47_15875	0.13	-0.7
3,350,981	-		IAI47_15875	0.13	-0.3
3,350,981	-		IAI47_15875	0.13	-1.5
3,350,981	-		IAI47_15875	0.13	-1.1
3,350,988	-		IAI47_15875	0.14	-0.3
3,351,145	+		IAI47_15875	0.35	-0.0
3,351,145	+		IAI47_15875	0.35	+1.1
3,351,145	+		IAI47_15875	0.35	-0.9
3,351,145	+		IAI47_15875	0.35	-0.6
3,351,146	-		IAI47_15875	0.35	-1.0
3,351,146	-		IAI47_15875	0.35	+0.4
3,351,167	+		IAI47_15875	0.38	-1.1
3,351,168	-		IAI47_15875	0.38	-1.6
3,351,204	-		IAI47_15875	0.43	+0.2
3,351,394	+		IAI47_15875	0.69	-1.5
3,351,394	+		IAI47_15875	0.69	+0.2
3,351,395	-		IAI47_15875	0.69	-0.3
3,351,428	+		IAI47_15875	0.73	+1.2
3,351,429	-		IAI47_15875	0.73	+0.4
3,351,429	-		IAI47_15875	0.73	-0.6
3,351,453	+		IAI47_15875	0.77	+0.6
3,351,462	-		IAI47_15875	0.78	+1.2
3,351,496	+		IAI47_15875	0.82	-0.8
3,351,516	+		IAI47_15875	0.85	+0.5
3,351,516	+		IAI47_15875	0.85	+1.0
3,351,516	+		IAI47_15875	0.85	+0.1
3,351,536	+		IAI47_15875	0.88	-1.4
3,351,536	+		IAI47_15875	0.88	+1.3
3,351,536	+		IAI47_15875	0.88	-0.1
3,351,536	+		IAI47_15875	0.88	-0.5
3,351,536	+		IAI47_15875	0.88	-0.2
3,351,560	+				+0.1
3,351,560	+				+1.6
3,351,572	+				+0.6
3,351,602	+				-1.5
3,351,603	-				-1.7
3,351,624	+				+4.1
3,351,624	+				+0.7
3,351,624	+				+1.1
3,351,625	-				-0.2
3,351,625	-				-0.2
3,351,625	-				-0.1
3,351,630	+				+0.4
3,351,630	+				+0.5
3,351,630	+				-0.4
3,351,630	+				+3.2
3,351,630	+				-0.6
3,351,630	+				+2.3
3,351,631	-				+0.6
3,351,631	-				+0.7
3,351,631	-				-1.3
3,351,631	-				+1.2
3,351,631	-				+0.8
3,351,724	+		IAI47_15880	0.45	-1.2
3,351,724	+		IAI47_15880	0.45	+2.1
3,351,739	+		IAI47_15880	0.53	-0.1
3,351,740	-		IAI47_15880	0.53	+0.2
3,351,740	-		IAI47_15880	0.53	-0.2
3,351,740	-		IAI47_15880	0.53	+1.1
3,351,794	-		IAI47_15880	0.80	+1.5
3,351,833	+				+1.9
3,351,833	+				+0.8
3,351,834	-				+0.2
3,352,035	+		IAI47_15885	0.43	-0.6
3,352,035	+		IAI47_15885	0.43	-0.6
3,352,035	+		IAI47_15885	0.43	-0.1
3,352,035	+		IAI47_15885	0.43	+0.1
3,352,035	+		IAI47_15885	0.43	+1.4
3,352,035	+		IAI47_15885	0.43	-0.6
3,352,035	+		IAI47_15885	0.43	+0.8
3,352,035	+		IAI47_15885	0.43	-0.6
3,352,036	-		IAI47_15885	0.44	+0.1
3,352,036	-		IAI47_15885	0.44	-0.6
3,352,036	-		IAI47_15885	0.44	-1.4
3,352,036	-		IAI47_15885	0.44	-1.1
3,352,036	-		IAI47_15885	0.44	-0.4
3,352,036	-		IAI47_15885	0.44	-1.9
3,352,036	-		IAI47_15885	0.44	+2.7
3,352,036	-		IAI47_15885	0.44	-0.6
3,352,106	+		IAI47_15885	0.61	+0.3
3,352,106	+		IAI47_15885	0.61	-0.3
3,352,106	+		IAI47_15885	0.61	-1.6
3,352,107	-		IAI47_15885	0.62	+1.6
3,352,107	-		IAI47_15885	0.62	-1.1
3,352,107	-		IAI47_15885	0.62	+0.3
3,352,165	+		IAI47_15885	0.76	-1.3
3,352,165	+		IAI47_15885	0.76	+0.6
3,352,165	+		IAI47_15885	0.76	-2.1
3,352,165	+		IAI47_15885	0.76	+1.4
3,352,165	+		IAI47_15885	0.76	-0.4
3,352,166	-		IAI47_15885	0.77	+0.2
3,352,166	-		IAI47_15885	0.77	+0.0
3,352,166	-		IAI47_15885	0.77	+0.1
3,352,176	+		IAI47_15885	0.79	-0.1
3,352,176	+		IAI47_15885	0.79	+1.1
3,352,176	+		IAI47_15885	0.79	-1.0
3,352,176	+		IAI47_15885	0.79	+0.3
3,352,176	+		IAI47_15885	0.79	-0.2
3,352,176	+		IAI47_15885	0.79	-0.1
3,352,176	+		IAI47_15885	0.79	+1.1
3,352,177	-		IAI47_15885	0.79	-0.7
3,352,177	-		IAI47_15885	0.79	+2.1
3,352,177	-		IAI47_15885	0.79	+4.1
3,352,177	-		IAI47_15885	0.79	+0.8
3,352,177	-		IAI47_15885	0.79	-0.6
3,352,177	-		IAI47_15885	0.79	-1.1
3,352,213	+		IAI47_15885	0.88	+0.5
3,352,214	-		IAI47_15885	0.89	+1.7
3,352,272	+				-1.4
3,352,275	+				-1.3
3,352,275	+				-1.2
3,352,275	+				+1.2
3,352,275	+				+1.0
3,352,275	+				-0.6
3,352,275	+				+1.3
3,352,275	+				+0.2
3,352,275	+				+2.5
3,352,275	+				-0.6
3,352,275	+				-0.3
3,352,276	-				+0.5
3,352,276	-				+0.2
3,352,276	-				+0.3
3,352,276	-				-0.8
3,352,276	-				-0.1
3,352,276	-				+1.4
3,352,276	-				-0.7
3,352,276	-				-0.4
3,352,329	+				-0.1
3,352,329	+				-1.5
3,352,329	+				-2.3
3,352,329	+				+0.6
3,352,345	+				+1.5
3,352,345	+				+2.6
3,352,345	+				-0.0
3,352,345	+				-0.4
3,352,345	+				+0.4
3,352,346	-				+0.8
3,352,346	-				+0.3
3,352,346	-				-0.5
3,352,346	-				+0.8
3,352,397	+				-0.1
3,352,407	+				+2.1
3,352,407	+				+0.6
3,352,407	+				+2.3
3,352,408	-				+2.3
3,352,408	-				+0.4
3,352,408	-				-0.3
3,352,438	+				+0.4
3,352,438	+				-1.1
3,352,439	-				+0.0
3,352,439	-				-3.1
3,352,440	+				-1.2
3,352,440	+				-0.1