Strain Fitness in Pantoea sp. MT58 around IAI47_15865

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,348,067	+		IAI47_15860	0.25	-1.1
3,348,067	+		IAI47_15860	0.25	+0.8
3,348,067	+		IAI47_15860	0.25	+1.5
3,348,067	+		IAI47_15860	0.25	-0.0
3,348,068	-		IAI47_15860	0.25	-0.1
3,348,068	-		IAI47_15860	0.25	+2.1
3,348,068	-		IAI47_15860	0.25	-0.9
3,348,085	+		IAI47_15860	0.26	+1.4
3,348,085	+		IAI47_15860	0.26	+0.0
3,348,148	-		IAI47_15860	0.31	-0.9
3,348,148	-		IAI47_15860	0.31	+3.5
3,348,166	+		IAI47_15860	0.33	+0.1
3,348,166	+		IAI47_15860	0.33	+1.2
3,348,166	+		IAI47_15860	0.33	-1.7
3,348,166	+		IAI47_15860	0.33	+1.1
3,348,166	+		IAI47_15860	0.33	+1.9
3,348,167	-		IAI47_15860	0.33	+0.2
3,348,167	-		IAI47_15860	0.33	-0.1
3,348,167	-		IAI47_15860	0.33	-1.3
3,348,167	-		IAI47_15860	0.33	+1.7
3,348,167	-		IAI47_15860	0.33	+0.1
3,348,167	-		IAI47_15860	0.33	-1.5
3,348,167	-		IAI47_15860	0.33	-2.3
3,348,167	-		IAI47_15860	0.33	-1.0
3,348,349	-		IAI47_15860	0.48	-1.0
3,348,349	-		IAI47_15860	0.48	-0.8
3,348,401	-		IAI47_15860	0.52	-0.7
3,348,401	-		IAI47_15860	0.52	+1.3
3,348,401	-		IAI47_15860	0.52	+1.0
3,348,401	-		IAI47_15860	0.52	-0.6
3,348,576	+		IAI47_15860	0.67	+0.6
3,348,576	+		IAI47_15860	0.67	+1.4
3,348,576	+		IAI47_15860	0.67	-0.6
3,348,576	+		IAI47_15860	0.67	-0.5
3,348,577	-		IAI47_15860	0.67	+0.6
3,348,577	-		IAI47_15860	0.67	+0.7
3,348,577	-		IAI47_15860	0.67	-1.5
3,348,577	-		IAI47_15860	0.67	+0.6
3,348,577	-		IAI47_15860	0.67	-0.6
3,348,577	-		IAI47_15860	0.67	+0.7
3,348,577	-		IAI47_15860	0.67	+2.3
3,348,577	-		IAI47_15860	0.67	-2.2
3,348,578	+		IAI47_15860	0.67	+0.4
3,348,619	+		IAI47_15860	0.71	-0.5
3,348,628	+		IAI47_15860	0.71	+0.3
3,348,643	+		IAI47_15860	0.73	-0.8
3,348,643	+		IAI47_15860	0.73	+0.3
3,348,643	+		IAI47_15860	0.73	+0.0
3,348,643	+		IAI47_15860	0.73	+0.5
3,348,644	-		IAI47_15860	0.73	+0.2
3,348,644	-		IAI47_15860	0.73	-0.6
3,348,644	-		IAI47_15860	0.73	+0.8
3,348,644	-		IAI47_15860	0.73	+1.9
3,348,644	-		IAI47_15860	0.73	-1.9
3,348,644	-		IAI47_15860	0.73	+5.5
3,348,695	+		IAI47_15860	0.77	-1.1
3,348,695	+		IAI47_15860	0.77	+1.2
3,348,695	+		IAI47_15860	0.77	+1.7
3,348,695	+		IAI47_15860	0.77	-0.5
3,348,695	+		IAI47_15860	0.77	+2.3
3,348,695	+		IAI47_15860	0.77	-0.3
3,348,695	+		IAI47_15860	0.77	-0.7
3,348,695	+		IAI47_15860	0.77	-0.5
3,348,695	+		IAI47_15860	0.77	+1.5
3,348,695	+		IAI47_15860	0.77	-1.1
3,348,695	+		IAI47_15860	0.77	-0.6
3,348,696	-		IAI47_15860	0.77	+0.2
3,348,696	-		IAI47_15860	0.77	+2.1
3,348,696	-		IAI47_15860	0.77	+1.1
3,348,696	-		IAI47_15860	0.77	+1.1
3,348,696	-		IAI47_15860	0.77	-0.0
3,348,696	-		IAI47_15860	0.77	-0.3
3,348,754	+		IAI47_15860	0.82	+0.4
3,348,754	+		IAI47_15860	0.82	-0.3
3,348,755	-		IAI47_15860	0.82	-1.2
3,348,755	-		IAI47_15860	0.82	+1.7
3,348,755	-		IAI47_15860	0.82	+1.8
3,348,933	+				+0.3
3,348,933	+				+0.2
3,348,933	+				-0.6
3,348,933	+				-0.3
3,348,933	+				-1.2
3,348,933	+				-0.2
3,348,933	+				+0.9
3,348,933	+				+1.2
3,348,933	+				+0.3
3,348,933	+				+0.9
3,348,933	+				+1.2
3,348,933	+				-1.7
3,348,933	+				-0.6
3,348,934	-				-0.3
3,348,934	-				-0.7
3,348,934	-				+1.0
3,348,934	-				-0.6
3,348,934	-				+0.0
3,348,934	-				+0.3
3,348,969	+				+2.2
3,349,080	+				+0.7
3,349,081	-				+0.1
3,349,084	+				-0.4
3,349,084	+				-0.1
3,349,084	+				-0.3
3,349,084	+				+0.3
3,349,084	+				-1.9
3,349,084	+				-0.3
3,349,084	+				-0.3
3,349,084	+				+1.3
3,349,085	-				-0.8
3,349,085	-				+1.4
3,349,085	-				-0.3
3,349,085	-				+1.1
3,349,085	-				+1.1
3,349,085	-				-0.4
3,349,146	+		IAI47_15865	0.14	+0.1
3,349,146	+		IAI47_15865	0.14	-1.1
3,349,147	-		IAI47_15865	0.15	+0.5
3,349,147	-		IAI47_15865	0.15	+0.4
3,349,147	-		IAI47_15865	0.15	+0.8
3,349,237	+		IAI47_15865	0.23	+0.2
3,349,238	-		IAI47_15865	0.23	-2.2
3,349,238	-		IAI47_15865	0.23	-1.1
3,349,401	+		IAI47_15865	0.39	-0.0
3,349,402	-		IAI47_15865	0.39	-2.5
3,349,455	+		IAI47_15865	0.44	+0.2
3,349,455	+		IAI47_15865	0.44	-1.0
3,349,455	+		IAI47_15865	0.44	+1.3
3,349,455	+		IAI47_15865	0.44	-0.5
3,349,455	+		IAI47_15865	0.44	+0.2
3,349,455	+		IAI47_15865	0.44	+0.5
3,349,455	+		IAI47_15865	0.44	+4.2
3,349,456	-		IAI47_15865	0.44	-0.1
3,349,456	-		IAI47_15865	0.44	-1.1
3,349,456	-		IAI47_15865	0.44	+0.6
3,349,456	-		IAI47_15865	0.44	-1.4
3,349,456	-		IAI47_15865	0.44	-1.1
3,349,456	-		IAI47_15865	0.44	+0.4
3,349,515	-		IAI47_15865	0.50	+0.1
3,349,583	+		IAI47_15865	0.56	-0.5
3,349,583	+		IAI47_15865	0.56	-0.3
3,349,584	-		IAI47_15865	0.56	-0.5
3,349,636	+		IAI47_15865	0.61	+3.1
3,349,636	+		IAI47_15865	0.61	+0.5
3,349,662	-		IAI47_15865	0.64	+0.0
3,349,662	-		IAI47_15865	0.64	-0.8
3,349,662	-		IAI47_15865	0.64	-0.5
3,349,662	-		IAI47_15865	0.64	+0.7
3,349,662	-		IAI47_15865	0.64	+0.6
3,349,688	+		IAI47_15865	0.66	-0.8
3,349,704	-		IAI47_15865	0.68	+1.0
3,349,704	-		IAI47_15865	0.68	+0.6
3,349,739	+		IAI47_15865	0.71	+0.4
3,349,739	+		IAI47_15865	0.71	+0.3
3,349,739	+		IAI47_15865	0.71	+1.3
3,349,739	+		IAI47_15865	0.71	+1.7
3,349,740	-		IAI47_15865	0.71	+0.6
3,349,740	-		IAI47_15865	0.71	-0.2
3,349,740	-		IAI47_15865	0.71	+1.9
3,349,740	-		IAI47_15865	0.71	-0.4
3,349,748	+		IAI47_15865	0.72	-0.2
3,349,748	+		IAI47_15865	0.72	-1.1
3,349,748	+		IAI47_15865	0.72	+5.2
3,349,749	-		IAI47_15865	0.72	-0.3
3,349,801	+		IAI47_15865	0.77	-1.5
3,349,801	+		IAI47_15865	0.77	-0.3
3,349,802	-		IAI47_15865	0.77	-0.5
3,349,820	+		IAI47_15865	0.79	+1.2
3,349,820	+		IAI47_15865	0.79	+0.4
3,349,821	-		IAI47_15865	0.79	+1.0
3,349,821	-		IAI47_15865	0.79	+0.7
3,349,821	-		IAI47_15865	0.79	+0.7
3,349,826	+		IAI47_15865	0.80	+0.2
3,349,827	-		IAI47_15865	0.80	+1.4
3,349,827	-		IAI47_15865	0.80	+0.5
3,349,877	+		IAI47_15865	0.85	+0.6
3,349,877	+		IAI47_15865	0.85	+1.2
3,349,878	-		IAI47_15865	0.85	+2.8
3,349,878	-		IAI47_15865	0.85	-0.8
3,349,878	-		IAI47_15865	0.85	+1.0
3,349,931	+		IAI47_15865	0.90	+1.7
3,349,931	+		IAI47_15865	0.90	+2.4
3,349,931	+		IAI47_15865	0.90	+0.1
3,349,931	+		IAI47_15865	0.90	+0.8
3,349,931	+		IAI47_15865	0.90	+0.8
3,349,932	-		IAI47_15865	0.90	-0.6
3,349,932	-		IAI47_15865	0.90	+0.1
3,349,932	-		IAI47_15865	0.90	+1.7
3,349,932	-		IAI47_15865	0.90	+0.8
3,349,992	+				-2.4
3,349,992	+				+0.2
3,349,992	+				+1.1
3,349,992	+				-0.6
3,349,992	+				+0.2
3,349,993	-				+1.2
3,350,003	+				+0.3
3,350,004	-				-0.4
3,350,030	+				-1.3
3,350,030	+				-0.1
3,350,031	-				-1.4
3,350,036	+				-0.4
3,350,036	+				-0.6
3,350,036	+				-0.6
3,350,036	+				+1.9
3,350,036	-				-1.7
3,350,037	-				-1.3
3,350,037	-				-1.4
3,350,037	-				+1.4
3,350,037	-				+1.4
3,350,037	-				-0.8
3,350,040	+				+2.1
3,350,040	+				+1.3
3,350,040	+				-0.7
3,350,040	+				+0.5
3,350,040	+				-0.5
3,350,040	+				-0.8
3,350,040	+				-1.3
3,350,040	+				+0.3
3,350,040	+				-0.8
3,350,040	+				+1.2
3,350,040	+				-0.8
3,350,040	+				+1.2
3,350,040	+				-0.8
3,350,040	+				-1.1
3,350,040	+				-0.8
3,350,040	+				+0.0
3,350,040	+				-0.5
3,350,041	-				-1.2
3,350,041	-				-0.4
3,350,041	-				+0.0
3,350,041	-				+0.1
3,350,041	-				+0.0
3,350,041	-				+0.7
3,350,041	-				+3.8
3,350,041	-				-0.3
3,350,041	-				+0.8
3,350,051	+				-0.1
3,350,051	+				+2.8
3,350,052	-				+0.4
3,350,052	-				-0.4
3,350,080	+				-1.7
3,350,080	+				-0.3
3,350,080	+				-0.1
3,350,080	+				+0.2
3,350,080	+				-0.8
3,350,080	+				+0.7
3,350,081	-				+1.9
3,350,081	-				-0.1
3,350,095	+				-1.4
3,350,095	+				-1.1
3,350,096	-				+0.6
3,350,096	-				+1.0
3,350,102	-				-1.0
3,350,102	-				-0.4
3,350,102	-				-1.5
3,350,107	-				-0.3
3,350,147	+				+0.1
3,350,148	-				-1.9
3,350,148	-				+1.0
3,350,151	+				+1.1
3,350,152	-				+0.5
3,350,152	-				+1.1
3,350,152	-				+1.1
3,350,172	+				+0.1
3,350,172	+				+0.4
3,350,172	+				+1.5
3,350,173	-				+0.1
3,350,219	-				+2.0
3,350,230	+				+0.8
3,350,230	+				-0.3
3,350,248	+				+0.4
3,350,248	+				-1.1
3,350,248	+				+0.3
3,350,248	+				+0.5
3,350,249	-				-1.2
3,350,276	+				-1.7
3,350,276	+				-0.7
3,350,276	+				-1.0
3,350,276	+				-0.5
3,350,278	+				-1.0
3,350,876	+				+0.3
3,350,876	+				+1.7
3,350,876	+				+0.2
3,350,877	-				-0.1
3,350,877	-				-1.3
3,350,877	-				-0.7
3,350,877	-				+1.2
3,350,879	+				+1.7
3,350,879	+				+0.4
3,350,879	+				-0.1
3,350,879	+				+0.9
3,350,879	+				-1.0
3,350,880	-				+0.2
3,350,880	-				+1.0
3,350,888	+				+0.2
3,350,888	+				-1.4
3,350,888	+				+0.5
3,350,888	+				+0.5
3,350,888	+				-1.1
3,350,888	+				-1.5
3,350,889	-				-0.3
3,350,889	-				-0.3
3,350,889	-				+0.0
3,350,889	-				+0.2
3,350,889	-				+1.4
3,350,958	-		IAI47_15875	0.10	+1.1
3,350,958	-		IAI47_15875	0.10	+0.1
3,350,965	+		IAI47_15875	0.11	+0.9
3,350,965	+		IAI47_15875	0.11	-0.1
3,350,965	+		IAI47_15875	0.11	+1.7
3,350,965	+		IAI47_15875	0.11	-0.8
3,350,966	-		IAI47_15875	0.11	+1.9
3,350,980	+		IAI47_15875	0.13	-0.7
3,350,981	-		IAI47_15875	0.13	-0.3
3,350,981	-		IAI47_15875	0.13	-1.5
3,350,981	-		IAI47_15875	0.13	-1.1
3,350,988	-		IAI47_15875	0.14	-0.3