Strain Fitness in Pantoea sp. MT58 around IAI47_15160

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,195,590	+		IAI47_15155	0.14	-1.7
3,195,591	-		IAI47_15155	0.14	-0.0
3,195,597	+		IAI47_15155	0.16	-2.3
3,195,741	-		IAI47_15155	0.46	-0.6
3,195,774	-		IAI47_15155	0.53	-2.8
3,195,820	+		IAI47_15155	0.63	+0.6
3,195,820	+		IAI47_15155	0.63	-1.0
3,195,820	+		IAI47_15155	0.63	-0.8
3,195,824	+		IAI47_15155	0.64	+1.6
3,195,824	+		IAI47_15155	0.64	-1.1
3,195,824	+		IAI47_15155	0.64	-1.7
3,195,824	+		IAI47_15155	0.64	-1.8
3,195,920	-		IAI47_15155	0.85	-2.2
3,195,920	-		IAI47_15155	0.85	-2.3
3,195,945	-				+0.4
3,195,990	-				+1.1
3,196,018	-				+0.9
3,196,072	+				+1.2
3,196,073	-				-1.5
3,196,087	+				-0.2
3,196,088	-				+0.6
3,196,088	-				+0.0
3,196,088	-				+1.3
3,196,091	-				-1.0
3,196,104	-				-1.1
3,196,106	-				+1.0
3,196,118	+				+1.3
3,196,121	+				+0.4
3,196,137	-				+2.0
3,196,158	-				-1.7
3,196,210	+				-0.5
3,196,211	-				-0.5
3,196,222	+				+0.8
3,196,222	+				+0.8
3,196,222	+				+1.0
3,196,223	-				-0.5
3,196,223	-				-1.2
3,196,223	-				-1.0
3,196,223	-				+0.2
3,196,223	-				+0.9
3,196,223	-				-0.9
3,196,223	-				-0.3
3,196,246	-				-0.8
3,196,292	+				+0.4
3,196,292	+				+0.0
3,196,338	+				+0.1
3,196,338	+				+0.9
3,196,338	+				-0.4
3,196,338	+				+1.0
3,196,338	+				-0.1
3,196,338	+				-0.1
3,196,338	+				+0.6
3,196,339	-				-0.7
3,196,339	-				-0.9
3,196,339	-				-0.4
3,196,339	-				+0.6
3,196,339	-				-0.1
3,196,339	-				-1.8
3,196,339	-				+1.2
3,196,339	-				-0.1
3,196,339	-				-2.8
3,196,339	-				-0.4
3,196,342	+				-0.5
3,196,342	+				-0.5
3,196,342	+				+0.7
3,196,342	+				-1.5
3,196,343	-				+0.9
3,196,343	-				-0.2
3,196,343	-				+0.7
3,196,349	+				+0.3
3,196,370	+				-0.1
3,196,370	+				-1.9
3,196,370	+				-0.7
3,196,372	+				+1.7
3,196,373	-				-0.1
3,196,395	-				+0.8
3,196,395	-				+0.1
3,196,427	-				+2.4
3,196,468	+				-0.3
3,196,468	+				+0.0
3,196,506	+				-1.6
3,196,507	-				+1.0
3,196,507	-				+1.2
3,196,507	-				+0.5
3,196,507	-				+1.1
3,196,507	-				-1.4
3,196,511	+				+1.2
3,196,511	+				+1.1
3,196,511	+				-1.2
3,196,511	+				-0.0
3,196,512	-				+1.8
3,196,512	-				+1.3
3,196,512	-				+0.5
3,196,512	-				-0.4
3,196,512	-				+0.7
3,196,512	-				+0.3
3,196,512	-				+0.2
3,196,616	+				+1.5
3,196,617	-				+0.1
3,196,617	-				-1.5
3,196,619	+				-0.3
3,196,619	+				+0.6
3,196,619	+				-0.9
3,196,619	+				-2.2
3,196,619	+				+3.2
3,196,619	+				+0.6
3,196,619	+				-0.8
3,196,619	+				-0.4
3,196,620	-				+1.7
3,196,620	-				-2.1
3,196,620	-				-1.1
3,196,652	-				-0.7
3,196,724	+				-0.5
3,196,724	+				-0.9
3,196,725	-				+0.5
3,196,725	-				-0.5
3,196,725	-				-0.0
3,196,761	+		IAI47_15160	0.12	-2.1
3,196,870	+		IAI47_15160	0.19	+2.2
3,196,969	+		IAI47_15160	0.25	-0.4
3,196,969	+		IAI47_15160	0.25	+0.0
3,197,044	+		IAI47_15160	0.30	+0.6
3,197,045	-		IAI47_15160	0.30	+0.3
3,197,045	-		IAI47_15160	0.30	+0.5
3,197,134	+		IAI47_15160	0.36	-2.3
3,197,134	+		IAI47_15160	0.36	-2.5
3,197,156	+		IAI47_15160	0.38	-0.3
3,197,183	+		IAI47_15160	0.40	+1.1
3,197,183	+		IAI47_15160	0.40	+0.7
3,197,183	+		IAI47_15160	0.40	+0.3
3,197,183	+		IAI47_15160	0.40	+0.3
3,197,184	-		IAI47_15160	0.40	+1.6
3,197,184	-		IAI47_15160	0.40	-0.4
3,197,184	-		IAI47_15160	0.40	-0.4
3,197,184	-		IAI47_15160	0.40	+1.0
3,197,195	+		IAI47_15160	0.40	+0.0
3,197,328	-		IAI47_15160	0.49	+0.8
3,197,411	+		IAI47_15160	0.55	-2.3
3,197,411	+		IAI47_15160	0.55	-0.4
3,197,412	-		IAI47_15160	0.55	+0.6
3,197,429	+		IAI47_15160	0.56	+2.5
3,197,430	-		IAI47_15160	0.56	-1.9
3,197,585	+		IAI47_15160	0.66	-0.7
3,197,627	+		IAI47_15160	0.69	+1.2
3,197,627	+		IAI47_15160	0.69	-0.4
3,197,627	+		IAI47_15160	0.69	+1.5
3,197,627	+		IAI47_15160	0.69	+1.3
3,197,627	+		IAI47_15160	0.69	-1.7
3,197,628	-		IAI47_15160	0.69	+0.9
3,197,628	-		IAI47_15160	0.69	+0.8
3,197,732	+		IAI47_15160	0.76	+1.4
3,197,733	-		IAI47_15160	0.76	-0.1
3,197,734	+		IAI47_15160	0.76	+0.7
3,197,734	+		IAI47_15160	0.76	+1.4
3,197,734	+		IAI47_15160	0.76	+1.5
3,197,734	+		IAI47_15160	0.76	-0.1
3,197,734	+		IAI47_15160	0.76	+0.3
3,197,735	-		IAI47_15160	0.76	+1.0
3,197,735	-		IAI47_15160	0.76	+0.5
3,197,735	-		IAI47_15160	0.76	+0.2
3,197,882	+		IAI47_15160	0.86	+0.9
3,197,882	+		IAI47_15160	0.86	-1.8
3,197,883	-		IAI47_15160	0.86	-0.7
3,197,942	+				-0.0
3,197,943	-				-0.7
3,197,943	-				+0.0
3,197,943	-				-0.3
3,197,946	+				+1.0
3,197,946	+				-0.4
3,197,946	+				-1.5
3,197,947	-				+0.5
3,197,947	-				-1.5
3,197,980	+				+0.2
3,197,980	+				-0.9
3,198,066	+				-0.6
3,198,066	+				-1.1
3,198,067	-				-1.3
3,198,067	-				-0.9
3,198,158	+				-2.7
3,198,186	+				-0.4
3,198,186	+				-0.4
3,198,186	+				+0.5
3,198,186	+				+1.3
3,198,187	-				-0.1
3,198,238	+		IAI47_15165	0.15	+0.5
3,198,238	+		IAI47_15165	0.15	-2.0
3,198,238	+		IAI47_15165	0.15	-1.0
3,198,239	-		IAI47_15165	0.15	+0.1
3,198,250	+		IAI47_15165	0.16	-0.9
3,198,250	+		IAI47_15165	0.16	+0.3
3,198,251	-		IAI47_15165	0.16	+0.5
3,198,251	-		IAI47_15165	0.16	+1.1
3,198,251	-		IAI47_15165	0.16	+1.3
3,198,275	-		IAI47_15165	0.19	+0.6
3,198,275	-		IAI47_15165	0.19	-0.0
3,198,386	+		IAI47_15165	0.30	+0.6
3,198,387	-		IAI47_15165	0.30	-0.0
3,198,417	+		IAI47_15165	0.33	+0.8
3,198,418	-		IAI47_15165	0.33	+0.9
3,198,418	-		IAI47_15165	0.33	+0.4
3,198,539	+		IAI47_15165	0.45	-0.1
3,198,539	+		IAI47_15165	0.45	-1.0
3,198,539	+		IAI47_15165	0.45	+0.1
3,198,539	+		IAI47_15165	0.45	+1.7
3,198,539	+		IAI47_15165	0.45	+1.5
3,198,540	-		IAI47_15165	0.45	+0.3
3,198,590	-		IAI47_15165	0.50	+0.0
3,198,605	-		IAI47_15165	0.51	+0.1
3,198,719	+		IAI47_15165	0.63	-0.3
3,198,769	+		IAI47_15165	0.68	+0.6
3,198,769	+		IAI47_15165	0.68	-0.2
3,198,769	+		IAI47_15165	0.68	-0.1
3,198,770	-		IAI47_15165	0.68	-0.9
3,198,791	+		IAI47_15165	0.70	-1.3
3,198,791	+		IAI47_15165	0.70	-0.8
3,198,791	+		IAI47_15165	0.70	-1.5
3,198,791	+		IAI47_15165	0.70	-0.7
3,198,791	+		IAI47_15165	0.70	-0.6
3,198,791	+		IAI47_15165	0.70	+0.0
3,198,792	-		IAI47_15165	0.70	-0.7
3,198,792	-		IAI47_15165	0.70	+0.1
3,198,792	-		IAI47_15165	0.70	-0.3
3,198,792	-		IAI47_15165	0.70	-1.1
3,198,795	+		IAI47_15165	0.70	-0.7
3,198,795	+		IAI47_15165	0.70	+0.3
3,198,796	-		IAI47_15165	0.71	-0.3
3,198,796	-		IAI47_15165	0.71	+0.9
3,198,796	-		IAI47_15165	0.71	+2.7
3,198,796	-		IAI47_15165	0.71	-0.4
3,198,796	-		IAI47_15165	0.71	-2.7
3,198,796	-		IAI47_15165	0.71	+0.2
3,198,796	-		IAI47_15165	0.71	-0.0
3,198,878	+		IAI47_15165	0.79	+0.1
3,199,016	+				+0.0
3,199,017	-				+0.6
3,199,020	-				-1.7
3,199,033	+				-1.5
3,199,033	+				-0.8
3,199,033	+				+1.2
3,199,033	+				+0.7
3,199,034	-				+1.3
3,199,034	-				+1.1
3,199,034	-				+0.7
3,199,034	-				-1.3
3,199,034	-				-2.9
3,199,036	+				-0.1
3,199,036	+				+2.0
3,199,036	+				-1.0
3,199,037	-				+0.1
3,199,037	-				-1.7
3,199,037	-				-0.7
3,199,056	+				+1.2
3,199,057	-				-1.6
3,199,073	+				-0.5
3,199,073	+				+1.4
3,199,073	+				+0.6
3,199,073	+				+0.7
3,199,073	+				-1.3
3,199,073	+				-1.3
3,199,073	+				+0.6
3,199,073	+				+2.9
3,199,073	+				+0.1
3,199,073	+				-0.1
3,199,074	-				-1.3
3,199,074	-				+3.1
3,199,074	-				-1.3
3,199,074	-				-0.0
3,199,074	-				+0.1
3,199,074	-				-3.2
3,199,074	-				-0.8
3,199,075	+				-0.8