Strain Fitness in Pantoea sp. MT58 around IAI47_12595

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,648,416	+		IAI47_12580	0.74	+1.0
2,648,417	-		IAI47_12580	0.74	-0.2
2,648,417	-		IAI47_12580	0.74	-0.5
2,648,432	-		IAI47_12580	0.76	+0.2
2,648,498	+		IAI47_12580	0.86	-0.7
2,648,498	+		IAI47_12580	0.86	-0.3
2,648,498	+		IAI47_12580	0.86	-0.6
2,648,498	+		IAI47_12580	0.86	+1.6
2,648,498	+		IAI47_12580	0.86	+0.4
2,648,498	+		IAI47_12580	0.86	-1.3
2,648,498	+		IAI47_12580	0.86	-1.1
2,648,499	-		IAI47_12580	0.86	-0.7
2,648,499	-		IAI47_12580	0.86	+0.7
2,648,499	-		IAI47_12580	0.86	+1.1
2,648,499	-		IAI47_12580	0.86	+1.8
2,648,499	-		IAI47_12580	0.86	-0.1
2,648,499	-		IAI47_12580	0.86	+0.5
2,648,499	-		IAI47_12580	0.86	-1.5
2,648,522	+				+2.0
2,648,522	+				-1.5
2,648,522	+				-0.0
2,648,522	+				-0.6
2,648,522	+				-0.5
2,648,522	+				-0.8
2,648,523	-				+0.5
2,648,523	-				+0.8
2,648,523	-				+2.0
2,648,534	+				+1.3
2,648,534	+				+0.2
2,648,534	+				+0.4
2,648,535	-				-0.5
2,648,535	-				+0.8
2,648,535	-				-0.5
2,648,535	-				+0.0
2,648,558	-				-0.5
2,648,585	+				+1.2
2,648,609	+				-1.2
2,648,609	+				-0.2
2,648,609	+				-1.3
2,648,610	-				+1.2
2,648,640	+				-0.9
2,648,640	+				+2.0
2,648,659	+				+0.5
2,648,677	-				-1.1
2,649,079	+		IAI47_12590	0.21	+0.7
2,649,079	+		IAI47_12590	0.21	-0.6
2,649,080	-		IAI47_12590	0.22	+0.2
2,649,112	+		IAI47_12590	0.33	-0.5
2,649,113	-		IAI47_12590	0.33	+4.7
2,649,113	-		IAI47_12590	0.33	+2.6
2,649,195	+		IAI47_12590	0.63	-0.4
2,649,232	+		IAI47_12590	0.76	+0.1
2,649,232	+		IAI47_12590	0.76	+0.2
2,649,232	+		IAI47_12590	0.76	+3.7
2,649,232	+		IAI47_12590	0.76	+0.7
2,649,232	+		IAI47_12590	0.76	+0.3
2,649,233	-		IAI47_12590	0.76	+0.5
2,649,233	-		IAI47_12590	0.76	-0.6
2,649,233	-		IAI47_12590	0.76	-1.4
2,649,233	-		IAI47_12590	0.76	-0.2
2,649,237	+		IAI47_12590	0.78	-0.1
2,649,238	-		IAI47_12590	0.78	-0.2
2,649,280	+				-1.5
2,649,299	+				-0.6
2,649,299	+				-0.2
2,649,299	+				+0.1
2,649,299	+				-0.1
2,649,299	+				+1.5
2,649,299	+				-0.0
2,649,299	+				+0.2
2,649,299	+				+1.4
2,649,300	-				+2.8
2,649,369	+				+1.1
2,649,369	+				-1.1
2,649,369	+				+0.9
2,649,369	+				-0.5
2,649,369	+				-0.2
2,649,370	-				-0.4
2,649,370	-				+0.4
2,649,375	+				+0.6
2,649,375	+				+0.7
2,649,375	+				+0.4
2,649,375	+				-0.4
2,649,375	+				+0.6
2,649,376	-				-1.3
2,649,376	-				+0.5
2,649,376	-				-0.3
2,649,383	+				+0.8
2,649,383	+				+0.1
2,649,383	+				-1.9
2,649,383	+				-1.5
2,649,383	+				-1.3
2,649,383	+				+0.3
2,649,384	-				-1.2
2,649,384	-				+1.2
2,649,384	-				+1.4
2,649,384	-				+0.6
2,649,384	-				+0.1
2,649,384	-				-0.2
2,649,384	-				+2.6
2,649,479	+				-0.5
2,649,480	-				+3.6
2,649,546	+		IAI47_12595	0.14	-0.5
2,649,546	+		IAI47_12595	0.14	-0.7
2,649,547	-		IAI47_12595	0.14	-1.8
2,649,547	-		IAI47_12595	0.14	+1.2
2,649,547	-		IAI47_12595	0.14	+0.2
2,649,608	+		IAI47_12595	0.19	-1.2
2,649,653	+		IAI47_12595	0.23	-1.8
2,649,653	+		IAI47_12595	0.23	+1.7
2,649,653	+		IAI47_12595	0.23	-1.0
2,649,653	+		IAI47_12595	0.23	+2.3
2,649,654	-		IAI47_12595	0.23	+2.0
2,649,654	-		IAI47_12595	0.23	-0.8
2,649,654	-		IAI47_12595	0.23	-0.2
2,649,654	-		IAI47_12595	0.23	-0.3
2,649,687	+		IAI47_12595	0.25	-0.5
2,649,714	-		IAI47_12595	0.28	-0.9
2,649,731	+		IAI47_12595	0.29	+1.2
2,649,731	+		IAI47_12595	0.29	-1.3
2,649,731	+		IAI47_12595	0.29	+0.9
2,649,732	-		IAI47_12595	0.29	+0.9
2,649,732	-		IAI47_12595	0.29	+1.6
2,649,754	+		IAI47_12595	0.31	+1.4
2,649,757	+		IAI47_12595	0.31	-0.5
2,649,757	+		IAI47_12595	0.31	+1.9
2,649,757	+		IAI47_12595	0.31	-0.0
2,649,757	+		IAI47_12595	0.31	+2.8
2,649,758	-		IAI47_12595	0.31	+1.5
2,649,758	-		IAI47_12595	0.31	-0.1
2,649,804	-		IAI47_12595	0.35	+1.8
2,649,804	-		IAI47_12595	0.35	+1.4
2,649,843	+		IAI47_12595	0.39	+0.5
2,649,843	+		IAI47_12595	0.39	+0.2
2,649,843	+		IAI47_12595	0.39	-0.1
2,649,843	+		IAI47_12595	0.39	-0.5
2,649,843	+		IAI47_12595	0.39	-0.3
2,649,843	+		IAI47_12595	0.39	-0.9
2,649,843	+		IAI47_12595	0.39	+1.2
2,649,844	-		IAI47_12595	0.39	+0.1
2,649,844	-		IAI47_12595	0.39	+3.1
2,649,844	-		IAI47_12595	0.39	+0.1
2,649,983	+		IAI47_12595	0.50	+1.6
2,649,984	-		IAI47_12595	0.50	-0.0
2,649,993	+		IAI47_12595	0.51	-1.1
2,649,994	-		IAI47_12595	0.51	+1.5
2,649,996	+		IAI47_12595	0.51	+1.8
2,649,997	-		IAI47_12595	0.51	+0.1
2,649,997	-		IAI47_12595	0.51	-2.2
2,649,997	-		IAI47_12595	0.51	-0.2
2,649,997	-		IAI47_12595	0.51	-0.5
2,649,997	-		IAI47_12595	0.51	-0.0
2,649,997	-		IAI47_12595	0.51	-0.6
2,649,997	-		IAI47_12595	0.51	-1.6
2,650,025	+		IAI47_12595	0.54	-1.5
2,650,025	+		IAI47_12595	0.54	-1.8
2,650,035	+		IAI47_12595	0.55	+0.5
2,650,036	-		IAI47_12595	0.55	+0.9
2,650,055	-		IAI47_12595	0.56	-0.3
2,650,071	+		IAI47_12595	0.58	-0.8
2,650,072	-		IAI47_12595	0.58	-0.1
2,650,072	-		IAI47_12595	0.58	+0.4
2,650,072	-		IAI47_12595	0.58	-0.0
2,650,112	+		IAI47_12595	0.61	-1.3
2,650,112	+		IAI47_12595	0.61	+2.3
2,650,113	-		IAI47_12595	0.61	+2.5
2,650,113	-		IAI47_12595	0.61	+0.3
2,650,113	-		IAI47_12595	0.61	+1.4
2,650,118	-		IAI47_12595	0.62	-0.1
2,650,133	+		IAI47_12595	0.63	-2.0
2,650,133	+		IAI47_12595	0.63	+0.3
2,650,133	+		IAI47_12595	0.63	+0.1
2,650,156	+		IAI47_12595	0.65	+0.4
2,650,157	-		IAI47_12595	0.65	+1.0
2,650,277	+		IAI47_12595	0.75	+2.2
2,650,278	-		IAI47_12595	0.75	+1.4
2,650,315	+		IAI47_12595	0.78	-1.2
2,650,315	+		IAI47_12595	0.78	-0.8
2,650,315	+		IAI47_12595	0.78	-0.8
2,650,316	-		IAI47_12595	0.78	-0.4
2,650,337	+		IAI47_12595	0.80	+0.7
2,650,337	+		IAI47_12595	0.80	-0.8
2,650,337	+		IAI47_12595	0.80	+0.2
2,650,338	-		IAI47_12595	0.80	+1.9
2,650,338	-		IAI47_12595	0.80	-0.4
2,650,338	-		IAI47_12595	0.80	+0.9
2,650,338	-		IAI47_12595	0.80	+0.6
2,650,343	+		IAI47_12595	0.81	+0.4
2,650,343	+		IAI47_12595	0.81	-2.9
2,650,344	-		IAI47_12595	0.81	-0.3
2,650,344	-		IAI47_12595	0.81	-0.5
2,650,346	+		IAI47_12595	0.81	-0.6
2,650,346	+		IAI47_12595	0.81	-0.1
2,650,346	+		IAI47_12595	0.81	-0.3
2,650,346	+		IAI47_12595	0.81	+0.1
2,650,346	+		IAI47_12595	0.81	+0.1
2,650,346	+		IAI47_12595	0.81	-2.2
2,650,346	+		IAI47_12595	0.81	-2.9
2,650,346	+		IAI47_12595	0.81	-0.4
2,650,347	-		IAI47_12595	0.81	-0.1
2,650,347	-		IAI47_12595	0.81	-0.8
2,650,347	-		IAI47_12595	0.81	-0.3
2,650,347	-		IAI47_12595	0.81	-0.0
2,650,347	-		IAI47_12595	0.81	-1.0
2,650,347	-		IAI47_12595	0.81	-1.1
2,650,347	-		IAI47_12595	0.81	-0.1
2,650,349	+		IAI47_12595	0.81	+0.1
2,650,349	+		IAI47_12595	0.81	-0.3
2,650,349	+		IAI47_12595	0.81	-0.8
2,650,350	-		IAI47_12595	0.81	-0.6
2,650,350	-		IAI47_12595	0.81	-0.2
2,650,350	-		IAI47_12595	0.81	-0.3
2,650,350	-		IAI47_12595	0.81	+0.8
2,650,350	-		IAI47_12595	0.81	+1.3
2,650,350	-		IAI47_12595	0.81	-1.6
2,650,350	-		IAI47_12595	0.81	-1.9
2,650,350	-		IAI47_12595	0.81	+0.4
2,650,366	+		IAI47_12595	0.82	-0.9
2,650,439	+		IAI47_12595	0.89	+1.9
2,650,440	-		IAI47_12595	0.89	-0.5
2,650,481	+				+0.6
2,650,482	-				+0.8
2,650,527	+				+0.6
2,650,527	+				+1.8
2,650,542	+				-0.2
2,650,543	-				+0.6
2,650,633	-				+3.0
2,650,633	-				-1.3
2,650,633	-				-0.6
2,650,633	-				-1.9
2,650,645	-				+0.7
2,650,645	-				-1.5
2,650,659	+				+0.6
2,650,715	+		IAI47_12600	0.21	-0.4
2,650,735	+		IAI47_12600	0.27	+1.6
2,650,735	+		IAI47_12600	0.27	-1.5
2,650,736	-		IAI47_12600	0.28	-1.4
2,650,736	-		IAI47_12600	0.28	+0.4
2,650,736	-		IAI47_12600	0.28	+0.9
2,650,742	+		IAI47_12600	0.30	+1.4
2,650,752	+		IAI47_12600	0.33	+1.4
2,650,801	+		IAI47_12600	0.48	-0.2
2,650,802	-		IAI47_12600	0.48	+0.3
2,650,802	-		IAI47_12600	0.48	+0.8
2,650,842	+		IAI47_12600	0.61	-0.8
2,650,842	+		IAI47_12600	0.61	+1.1
2,650,842	+		IAI47_12600	0.61	-0.1
2,650,842	+		IAI47_12600	0.61	-0.3
2,650,842	+		IAI47_12600	0.61	-2.3
2,650,842	+		IAI47_12600	0.61	-0.1
2,650,842	+		IAI47_12600	0.61	+2.1
2,650,843	-		IAI47_12600	0.61	-0.4
2,650,843	-		IAI47_12600	0.61	+0.3
2,650,843	-		IAI47_12600	0.61	+1.6
2,650,843	-		IAI47_12600	0.61	-2.5
2,650,843	-		IAI47_12600	0.61	+0.7
2,650,843	-		IAI47_12600	0.61	-1.9
2,650,846	+		IAI47_12600	0.62	-0.4
2,650,846	+		IAI47_12600	0.62	-0.7
2,650,846	+		IAI47_12600	0.62	+1.3
2,650,846	+		IAI47_12600	0.62	+0.9
2,650,846	+		IAI47_12600	0.62	+0.1
2,650,846	+		IAI47_12600	0.62	-1.5
2,650,846	+		IAI47_12600	0.62	-0.4
2,650,846	+		IAI47_12600	0.62	-0.5
2,650,846	+		IAI47_12600	0.62	-0.8
2,650,846	+		IAI47_12600	0.62	+2.1
2,650,847	-		IAI47_12600	0.63	+1.3
2,650,847	-		IAI47_12600	0.63	+0.1
2,650,847	-		IAI47_12600	0.63	-0.1
2,650,847	-		IAI47_12600	0.63	-1.1
2,650,847	-		IAI47_12600	0.63	-0.9
2,650,847	-		IAI47_12600	0.63	+2.0
2,650,847	-		IAI47_12600	0.63	-1.2
2,650,847	-		IAI47_12600	0.63	-0.3
2,650,847	-		IAI47_12600	0.63	+0.6
2,650,928	+		IAI47_12600	0.88	+0.2
2,650,928	+		IAI47_12600	0.88	-0.7
2,650,929	-		IAI47_12600	0.88	-0.7
2,650,963	+				+2.1
2,650,963	+				-0.9
2,650,963	+				-0.2
2,650,963	+				-0.3
2,650,963	+				-0.6
2,650,963	+				-0.8
2,650,963	+				+0.8
2,650,963	+				+0.8
2,650,964	-				-1.5
2,650,964	-				-1.1
2,651,000	+				+0.7
2,651,049	+		IAI47_12605	0.12	-0.8
2,651,097	+		IAI47_12605	0.24	+0.8
2,651,098	-		IAI47_12605	0.24	+0.4
2,651,098	-		IAI47_12605	0.24	-2.2
2,651,119	+		IAI47_12605	0.29	-0.2
2,651,120	-		IAI47_12605	0.29	+0.6
2,651,120	-		IAI47_12605	0.29	+0.0
2,651,120	-		IAI47_12605	0.29	+0.9
2,651,140	+		IAI47_12605	0.34	-1.4
2,651,140	+		IAI47_12605	0.34	-0.9
2,651,140	+		IAI47_12605	0.34	+0.5
2,651,141	-		IAI47_12605	0.34	+0.8
2,651,142	+		IAI47_12605	0.35	-0.3
2,651,142	+		IAI47_12605	0.35	+0.4
2,651,142	+		IAI47_12605	0.35	+0.5
2,651,142	+		IAI47_12605	0.35	-1.8
2,651,142	+		IAI47_12605	0.35	+0.6
2,651,143	-		IAI47_12605	0.35	-0.6
2,651,143	-		IAI47_12605	0.35	-0.1
2,651,143	-		IAI47_12605	0.35	-0.4
2,651,196	+		IAI47_12605	0.48	+1.6
2,651,196	+		IAI47_12605	0.48	+1.6
2,651,196	+		IAI47_12605	0.48	+0.1
2,651,197	-		IAI47_12605	0.48	+1.6
2,651,197	-		IAI47_12605	0.48	-0.2
2,651,212	+		IAI47_12605	0.51	-0.2
2,651,213	-		IAI47_12605	0.52	-2.4
2,651,231	+		IAI47_12605	0.56	+0.1
2,651,231	+		IAI47_12605	0.56	-0.2
2,651,232	-		IAI47_12605	0.56	-2.1
2,651,291	+		IAI47_12605	0.71	-0.6
2,651,291	+		IAI47_12605	0.71	+0.5
2,651,291	+		IAI47_12605	0.71	-0.1
2,651,291	+		IAI47_12605	0.71	+0.6
2,651,291	+		IAI47_12605	0.71	+3.0
2,651,292	-		IAI47_12605	0.71	-0.5
2,651,292	-		IAI47_12605	0.71	+1.1
2,651,309	+		IAI47_12605	0.75	+1.6
2,651,309	+		IAI47_12605	0.75	+1.5
2,651,309	+		IAI47_12605	0.75	+1.6
2,651,309	+		IAI47_12605	0.75	+0.2
2,651,309	+		IAI47_12605	0.75	-1.5
2,651,310	-		IAI47_12605	0.75	-0.2
2,651,310	-		IAI47_12605	0.75	+0.6
2,651,310	-		IAI47_12605	0.75	+2.4
2,651,310	-		IAI47_12605	0.75	+3.1
2,651,310	-		IAI47_12605	0.75	+3.0
2,651,324	+		IAI47_12605	0.79	-0.4
2,651,325	-		IAI47_12605	0.79	+1.5
2,651,325	-		IAI47_12605	0.79	+0.0
2,651,325	-		IAI47_12605	0.79	+0.5
2,651,325	-		IAI47_12605	0.79	+0.8
2,651,325	-		IAI47_12605	0.79	+0.3
2,651,359	+		IAI47_12605	0.87	+1.0
2,651,359	+		IAI47_12605	0.87	+1.7
2,651,359	+		IAI47_12605	0.87	+1.3
2,651,360	-		IAI47_12605	0.87	+2.1
2,651,360	-		IAI47_12605	0.87	+1.7
2,651,367	+		IAI47_12605	0.89	-1.4
2,651,368	-		IAI47_12605	0.89	-0.4
2,651,368	-		IAI47_12605	0.89	+0.3
2,651,368	-		IAI47_12605	0.89	+1.5
2,651,443	+				-0.5
2,651,443	+				-1.3
2,651,443	+				+0.4
2,651,443	+				+0.5
2,651,443	+				-0.9
2,651,443	+				+4.0
2,651,444	-				-0.5
2,651,444	-				+0.3
2,651,444	-				+0.3
2,651,444	-				+2.1
2,651,444	-				+2.0
2,651,444	-				-0.1
2,651,444	-				+0.6
2,651,444	-				+0.7
2,651,484	+				+4.4
2,651,484	+				-1.5
2,651,484	+				+1.5
2,651,485	-				+0.2
2,651,485	-				+0.4
2,651,485	-				-0.5
2,651,485	-				-0.3
2,651,504	+				-0.1
2,651,504	+				-0.2
2,651,504	+				-0.6
2,651,509	-				+0.0
2,651,509	-				-1.1
2,651,525	+				+1.1