Strain Fitness in Pantoea sp. MT58 around IAI47_10375

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,197,270	+		IAI47_10370	0.13	+0.1
2,197,270	+		IAI47_10370	0.13	-0.3
2,197,271	-		IAI47_10370	0.13	-1.0
2,197,271	-		IAI47_10370	0.13	-0.2
2,197,271	-		IAI47_10370	0.13	+0.0
2,197,271	-		IAI47_10370	0.13	+0.3
2,197,271	-		IAI47_10370	0.13	+1.6
2,197,273	+		IAI47_10370	0.14	-0.3
2,197,274	-		IAI47_10370	0.14	-0.2
2,197,282	+		IAI47_10370	0.14	-0.4
2,197,282	+		IAI47_10370	0.14	+0.7
2,197,283	-		IAI47_10370	0.15	+0.6
2,197,283	-		IAI47_10370	0.15	-1.1
2,197,308	-		IAI47_10370	0.17	+4.1
2,197,335	+		IAI47_10370	0.19	-1.0
2,197,336	-		IAI47_10370	0.20	+0.4
2,197,429	+		IAI47_10370	0.28	-1.7
2,197,429	+		IAI47_10370	0.28	-1.7
2,197,429	+		IAI47_10370	0.28	+0.2
2,197,429	+		IAI47_10370	0.28	-0.7
2,197,429	+		IAI47_10370	0.28	+2.6
2,197,430	-		IAI47_10370	0.29	+0.2
2,197,430	-		IAI47_10370	0.29	+0.4
2,197,430	-		IAI47_10370	0.29	-0.4
2,197,430	-		IAI47_10370	0.29	-1.8
2,197,430	-		IAI47_10370	0.29	-1.2
2,197,463	+		IAI47_10370	0.32	-0.2
2,197,463	+		IAI47_10370	0.32	-1.1
2,197,463	+		IAI47_10370	0.32	+1.5
2,197,463	+		IAI47_10370	0.32	-2.3
2,197,463	+		IAI47_10370	0.32	+0.6
2,197,464	-		IAI47_10370	0.32	-0.0
2,197,464	-		IAI47_10370	0.32	-1.6
2,197,525	+		IAI47_10370	0.38	-0.2
2,197,526	-		IAI47_10370	0.38	-2.1
2,197,546	+		IAI47_10370	0.40	-1.6
2,197,546	+		IAI47_10370	0.40	+0.9
2,197,592	+		IAI47_10370	0.44	+1.0
2,197,592	+		IAI47_10370	0.44	+0.9
2,197,593	-		IAI47_10370	0.44	-1.7
2,197,593	-		IAI47_10370	0.44	-1.7
2,197,593	-		IAI47_10370	0.44	-1.8
2,197,595	+		IAI47_10370	0.44	+0.0
2,197,655	-		IAI47_10370	0.50	-0.2
2,197,655	-		IAI47_10370	0.50	-0.6
2,197,698	-		IAI47_10370	0.54	+0.2
2,197,738	+		IAI47_10370	0.58	+1.2
2,197,739	-		IAI47_10370	0.58	+0.4
2,197,913	+		IAI47_10370	0.75	-0.7
2,197,913	+		IAI47_10370	0.75	+0.1
2,197,964	+		IAI47_10370	0.80	+1.2
2,197,971	-		IAI47_10370	0.80	-1.1
2,197,988	+		IAI47_10370	0.82	-0.6
2,198,143	+				+0.6
2,198,163	+				-0.9
2,198,164	-				-0.6
2,198,164	-				+0.6
2,198,164	-				-0.7
2,198,211	+				+0.8
2,198,211	+				+0.6
2,198,211	+				+1.2
2,198,212	-				+0.8
2,198,212	-				+0.4
2,198,212	-				+1.9
2,198,217	+				+0.0
2,198,217	+				+0.5
2,198,217	+				-0.5
2,198,217	+				+2.1
2,198,218	-				+1.6
2,198,220	+				-1.5
2,198,221	-				+3.0
2,198,221	-				-1.0
2,198,221	-				-1.2
2,198,221	-				-0.1
2,198,221	-				-0.3
2,198,265	+				+0.0
2,198,265	+				-1.5
2,198,265	+				-0.1
2,198,266	-				-1.2
2,198,266	-				+0.1
2,198,266	-				+2.0
2,198,266	-				+1.4
2,198,266	-				+0.2
2,198,266	-				+2.2
2,198,384	+		IAI47_10375	0.14	-0.3
2,198,384	+		IAI47_10375	0.14	-0.3
2,198,385	-		IAI47_10375	0.14	-0.2
2,198,606	+		IAI47_10375	0.38	+0.1
2,198,606	+		IAI47_10375	0.38	-1.1
2,198,606	+		IAI47_10375	0.38	+1.0
2,198,607	-		IAI47_10375	0.38	+1.1
2,198,607	-		IAI47_10375	0.38	-2.0
2,198,607	-		IAI47_10375	0.38	+0.8
2,198,607	-		IAI47_10375	0.38	+0.8
2,198,623	+		IAI47_10375	0.40	-0.9
2,198,623	+		IAI47_10375	0.40	-0.9
2,198,624	-		IAI47_10375	0.40	+1.3
2,198,624	-		IAI47_10375	0.40	+0.4
2,198,653	-		IAI47_10375	0.43	+0.9
2,198,677	+		IAI47_10375	0.46	+1.0
2,198,677	+		IAI47_10375	0.46	-0.0
2,198,677	+		IAI47_10375	0.46	-0.6
2,198,677	+		IAI47_10375	0.46	+0.8
2,198,678	-		IAI47_10375	0.46	+0.2
2,198,678	-		IAI47_10375	0.46	+2.1
2,198,678	-		IAI47_10375	0.46	+1.2
2,198,678	-		IAI47_10375	0.46	+1.0
2,198,683	+		IAI47_10375	0.46	+0.6
2,198,736	+		IAI47_10375	0.52	-1.1
2,198,736	+		IAI47_10375	0.52	+0.3
2,198,737	-		IAI47_10375	0.52	+1.7
2,198,853	-		IAI47_10375	0.65	+0.6
2,198,870	+		IAI47_10375	0.67	+0.1
2,198,870	+		IAI47_10375	0.67	-0.5
2,198,871	-		IAI47_10375	0.67	+0.6
2,198,915	+		IAI47_10375	0.72	+0.4
2,198,915	+		IAI47_10375	0.72	+0.7
2,198,915	+		IAI47_10375	0.72	+1.6
2,198,916	-		IAI47_10375	0.72	+0.3
2,198,916	-		IAI47_10375	0.72	+1.7
2,198,916	-		IAI47_10375	0.72	-2.3
2,198,916	-		IAI47_10375	0.72	+2.6
2,198,916	-		IAI47_10375	0.72	+0.2
2,198,916	-		IAI47_10375	0.72	-0.4
2,198,918	+		IAI47_10375	0.72	+1.7
2,198,918	+		IAI47_10375	0.72	+0.5
2,198,918	+		IAI47_10375	0.72	+1.9
2,198,919	-		IAI47_10375	0.72	-0.4
2,198,919	-		IAI47_10375	0.72	+0.9
2,198,919	-		IAI47_10375	0.72	+0.6
2,199,000	+		IAI47_10375	0.81	-0.8
2,199,001	-		IAI47_10375	0.81	+0.5
2,199,006	+		IAI47_10375	0.82	+1.4
2,199,006	+		IAI47_10375	0.82	-2.3
2,199,006	+		IAI47_10375	0.82	-1.2
2,199,006	+		IAI47_10375	0.82	-0.5
2,199,026	+		IAI47_10375	0.84	-0.2
2,199,027	-		IAI47_10375	0.84	-1.9
2,199,123	-				+0.4
2,199,123	-				-0.5
2,199,158	-				+0.3
2,199,170	+				+2.4
2,199,170	+				-1.8
2,199,170	+				-1.0
2,199,170	+				+1.9
2,199,170	+				-0.4
2,199,170	+				+0.0
2,199,170	+				-2.9
2,199,171	-				+0.6
2,199,171	-				+0.1
2,199,171	-				+0.8
2,199,171	-				-0.4
2,199,171	-				-0.5
2,199,171	-				+0.8
2,199,171	-				-0.6
2,199,171	-				-0.5
2,199,174	+				+0.0
2,199,174	+				-0.8
2,199,174	+				+0.6
2,199,174	+				-0.2
2,199,174	+				+0.7
2,199,174	+				+1.5
2,199,175	-				+1.4
2,199,175	-				+0.9
2,199,175	-				-0.5
2,199,195	+				-0.6
2,199,196	-				+1.2
2,199,270	+				-1.3
2,199,271	-				+1.2
2,199,271	-				+2.2
2,199,293	+				-1.6
2,199,293	+				-0.7
2,199,293	+				-0.4
2,199,294	-				+0.1
2,199,294	-				-1.2
2,199,299	+				+1.7
2,199,300	-				-0.2
2,199,318	+				+0.2
2,199,318	+				+0.3
2,199,319	-				-0.2
2,199,319	-				-0.6
2,199,319	-				-1.5
2,199,337	+				-1.0
2,199,337	+				+0.2
2,199,345	-				+0.0
2,199,380	+		IAI47_10380	0.13	-1.5
2,199,380	+		IAI47_10380	0.13	-1.0
2,199,396	+		IAI47_10380	0.15	-1.1
2,199,396	+		IAI47_10380	0.15	-0.6
2,199,397	-		IAI47_10380	0.15	-2.0
2,199,397	-		IAI47_10380	0.15	+0.2
2,199,440	+		IAI47_10380	0.19	+0.3
2,199,441	-		IAI47_10380	0.19	+0.5
2,199,468	+		IAI47_10380	0.22	-0.0
2,199,469	-		IAI47_10380	0.22	-0.1
2,199,502	+		IAI47_10380	0.26	+0.4
2,199,517	+		IAI47_10380	0.27	+1.8
2,199,517	+		IAI47_10380	0.27	+0.5
2,199,518	-		IAI47_10380	0.27	+0.0
2,199,518	-		IAI47_10380	0.27	-0.6
2,199,518	-		IAI47_10380	0.27	+0.4
2,199,579	-		IAI47_10380	0.33	+2.0
2,199,585	-		IAI47_10380	0.34	-0.4
2,199,631	+		IAI47_10380	0.39	+0.0
2,199,632	-		IAI47_10380	0.39	+1.1
2,199,632	-		IAI47_10380	0.39	-0.2
2,199,632	-		IAI47_10380	0.39	-1.2
2,199,632	-		IAI47_10380	0.39	+0.2
2,199,632	-		IAI47_10380	0.39	+1.0
2,199,635	-		IAI47_10380	0.39	-1.4
2,199,635	-		IAI47_10380	0.39	+0.5
2,199,635	-		IAI47_10380	0.39	+1.7
2,199,635	-		IAI47_10380	0.39	-1.2
2,199,761	-		IAI47_10380	0.52	-1.7
2,199,772	+		IAI47_10380	0.53	+1.2
2,199,773	-		IAI47_10380	0.53	+0.2
2,199,787	+		IAI47_10380	0.54	+0.6
2,199,787	+		IAI47_10380	0.54	+0.6
2,199,787	+		IAI47_10380	0.54	-0.4
2,199,787	+		IAI47_10380	0.54	+1.2
2,199,788	-		IAI47_10380	0.55	+1.1
2,199,788	-		IAI47_10380	0.55	-0.6
2,199,788	-		IAI47_10380	0.55	-0.9
2,199,788	-		IAI47_10380	0.55	+0.1
2,199,788	-		IAI47_10380	0.55	+0.5
2,199,788	-		IAI47_10380	0.55	+0.4
2,199,788	-		IAI47_10380	0.55	-1.4
2,199,789	+		IAI47_10380	0.55	+2.4
2,199,789	+		IAI47_10380	0.55	+0.3
2,199,789	+		IAI47_10380	0.55	+0.6
2,199,789	+		IAI47_10380	0.55	-1.0
2,199,790	-		IAI47_10380	0.55	-0.1
2,199,790	-		IAI47_10380	0.55	-0.1
2,199,790	-		IAI47_10380	0.55	+1.2
2,199,790	-		IAI47_10380	0.55	-1.2
2,199,790	-		IAI47_10380	0.55	+1.1
2,199,875	-		IAI47_10380	0.63	+1.4
2,199,937	+		IAI47_10380	0.70	+2.0
2,199,937	+		IAI47_10380	0.70	-1.2
2,199,937	+		IAI47_10380	0.70	-0.2
2,199,937	+		IAI47_10380	0.70	-0.6
2,199,937	+		IAI47_10380	0.70	+0.5
2,199,938	-		IAI47_10380	0.70	+0.9
2,199,938	-		IAI47_10380	0.70	+0.1
2,200,067	+		IAI47_10380	0.83	+0.4
2,200,068	-		IAI47_10380	0.83	-0.4
2,200,068	-		IAI47_10380	0.83	-0.8
2,200,078	+		IAI47_10380	0.84	+0.4
2,200,078	+		IAI47_10380	0.84	-0.7
2,200,078	+		IAI47_10380	0.84	+0.8
2,200,079	-		IAI47_10380	0.84	-1.5
2,200,123	+		IAI47_10380	0.89	+0.0
2,200,123	+		IAI47_10380	0.89	-1.2
2,200,123	+		IAI47_10380	0.89	-0.3
2,200,124	-		IAI47_10380	0.89	-0.9
2,200,124	-		IAI47_10380	0.89	-1.5
2,200,124	-		IAI47_10380	0.89	+0.8
2,200,124	-		IAI47_10380	0.89	+1.1
2,200,139	+				+0.4
2,200,139	+				+1.4
2,200,140	-				-0.9