Strain Fitness in Pantoea sp. MT58 around IAI47_10005

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,114,844	+				+2.9
2,114,850	-				-0.0
2,114,850	-				+2.4
2,114,852	+				-0.4
2,114,852	+				-2.2
2,114,853	-				+0.8
2,114,853	-				+0.5
2,114,853	-				+0.8
2,114,853	-				+1.0
2,114,855	+				-0.1
2,114,856	-				+2.3
2,114,856	-				+1.4
2,114,879	-				-0.5
2,114,879	-				-1.3
2,114,879	-				-2.0
2,114,898	+				+2.2
2,114,912	+		IAI47_10000	0.11	+0.4
2,114,912	+		IAI47_10000	0.11	-1.4
2,114,913	-		IAI47_10000	0.11	+1.1
2,114,913	-		IAI47_10000	0.11	-1.3
2,114,916	+		IAI47_10000	0.11	-0.8
2,114,916	+		IAI47_10000	0.11	+0.5
2,114,916	+		IAI47_10000	0.11	+0.7
2,114,916	+		IAI47_10000	0.11	+1.7
2,115,109	+		IAI47_10000	0.31	+0.4
2,115,109	+		IAI47_10000	0.31	+1.4
2,115,110	-		IAI47_10000	0.31	-1.4
2,115,110	-		IAI47_10000	0.31	-1.7
2,115,185	+		IAI47_10000	0.39	+0.2
2,115,185	+		IAI47_10000	0.39	-0.5
2,115,185	+		IAI47_10000	0.39	-0.1
2,115,185	+		IAI47_10000	0.39	-0.9
2,115,185	+		IAI47_10000	0.39	-0.1
2,115,185	+		IAI47_10000	0.39	-1.8
2,115,185	+		IAI47_10000	0.39	-3.0
2,115,185	+		IAI47_10000	0.39	+0.8
2,115,186	-		IAI47_10000	0.39	-0.2
2,115,186	-		IAI47_10000	0.39	-0.3
2,115,186	-		IAI47_10000	0.39	-0.6
2,115,186	-		IAI47_10000	0.39	-0.2
2,115,187	+		IAI47_10000	0.39	+0.8
2,115,187	+		IAI47_10000	0.39	-2.2
2,115,187	+		IAI47_10000	0.39	-0.4
2,115,188	-		IAI47_10000	0.39	+1.2
2,115,188	-		IAI47_10000	0.39	-0.9
2,115,188	-		IAI47_10000	0.39	+2.4
2,115,206	+		IAI47_10000	0.41	-0.8
2,115,206	+		IAI47_10000	0.41	-2.0
2,115,206	+		IAI47_10000	0.41	+2.0
2,115,206	+		IAI47_10000	0.41	-0.0
2,115,206	+		IAI47_10000	0.41	-0.4
2,115,206	+		IAI47_10000	0.41	-0.6
2,115,207	-		IAI47_10000	0.41	-1.1
2,115,207	-		IAI47_10000	0.41	+0.5
2,115,207	-		IAI47_10000	0.41	-1.0
2,115,207	-		IAI47_10000	0.41	+0.7
2,115,282	-		IAI47_10000	0.49	+1.4
2,115,282	-		IAI47_10000	0.49	-1.2
2,115,337	+		IAI47_10000	0.54	+0.0
2,115,337	+		IAI47_10000	0.54	-1.8
2,115,337	+		IAI47_10000	0.54	+0.6
2,115,338	-		IAI47_10000	0.55	-0.0
2,115,350	+		IAI47_10000	0.56	+1.0
2,115,566	+		IAI47_10000	0.78	+0.3
2,115,567	-		IAI47_10000	0.78	+1.3
2,115,621	+		IAI47_10000	0.84	-2.2
2,115,621	+		IAI47_10000	0.84	-1.1
2,115,621	+		IAI47_10000	0.84	-0.3
2,115,621	+		IAI47_10000	0.84	+0.6
2,115,622	-		IAI47_10000	0.84	-0.4
2,115,622	-		IAI47_10000	0.84	+0.2
2,115,623	+		IAI47_10000	0.84	+1.0
2,115,623	+		IAI47_10000	0.84	-0.3
2,115,623	+		IAI47_10000	0.84	-0.1
2,115,623	+		IAI47_10000	0.84	-0.1
2,115,623	+		IAI47_10000	0.84	+1.0
2,115,623	+		IAI47_10000	0.84	+0.8
2,115,624	-		IAI47_10000	0.84	-3.3
2,115,624	-		IAI47_10000	0.84	+0.8
2,115,624	-		IAI47_10000	0.84	+3.0
2,115,624	-		IAI47_10000	0.84	-0.1
2,115,699	+				-0.4
2,115,699	+				+1.4
2,115,699	+				+2.2
2,115,699	+				-0.6
2,115,700	-				-1.1
2,115,700	-				-0.8
2,115,700	-				-0.8
2,115,700	-				+1.8
2,115,779	+				+0.4
2,115,780	-				+0.6
2,115,780	-				-0.4
2,115,780	-				+1.6
2,115,780	-				+1.5
2,115,782	+				+0.1
2,115,782	+				+2.1
2,115,782	+				+0.6
2,115,783	-				-0.3
2,115,783	-				+2.4
2,115,783	-				-2.8
2,115,783	-				-1.2
2,115,791	+				+0.2
2,115,791	+				-0.8
2,115,791	+				+0.9
2,115,791	+				-0.2
2,115,791	+				+2.4
2,115,791	+				-0.2
2,115,791	+				+1.5
2,115,791	+				+1.2
2,115,791	+				-1.5
2,115,792	-				-1.4
2,115,792	-				-1.2
2,115,792	-				+0.2
2,115,792	-				-0.8
2,115,792	-				+0.4
2,115,792	-				+1.5
2,115,795	+				-1.0
2,115,795	+				+0.0
2,115,795	+				+1.8
2,115,795	+				+0.6
2,115,795	+				+1.4
2,115,795	+				+0.9
2,115,796	-				+2.5
2,115,796	-				+0.9
2,115,806	-				+0.4
2,115,835	+				-0.8
2,115,835	+				-0.7
2,115,836	-				-0.4
2,115,843	+				-0.9
2,115,844	-				+1.1
2,115,844	-				+0.9
2,115,844	-				+2.5
2,115,895	+				+0.4
2,115,896	-				-0.4
2,115,896	-				+1.4
2,115,937	+				-0.3
2,115,937	+				+0.2
2,115,938	-				+1.1
2,115,938	-				+0.2
2,116,008	+		IAI47_10005	0.13	-1.1
2,116,008	+		IAI47_10005	0.13	-2.0
2,116,008	+		IAI47_10005	0.13	+0.5
2,116,008	+		IAI47_10005	0.13	-0.8
2,116,009	-		IAI47_10005	0.13	+1.3
2,116,009	-		IAI47_10005	0.13	+0.3
2,116,009	-		IAI47_10005	0.13	-0.3
2,116,009	-		IAI47_10005	0.13	+0.0
2,116,021	+		IAI47_10005	0.14	+1.8
2,116,282	+		IAI47_10005	0.31	+0.1
2,116,282	+		IAI47_10005	0.31	-0.8
2,116,283	-		IAI47_10005	0.31	-0.6
2,116,283	-		IAI47_10005	0.31	+0.8
2,116,324	+		IAI47_10005	0.34	-0.9
2,116,325	-		IAI47_10005	0.34	+0.6
2,116,325	-		IAI47_10005	0.34	+0.3
2,116,502	+		IAI47_10005	0.46	+0.2
2,116,533	-		IAI47_10005	0.48	-0.1
2,116,669	+		IAI47_10005	0.57	+1.0
2,116,669	+		IAI47_10005	0.57	-1.8
2,116,670	-		IAI47_10005	0.57	+0.4
2,116,670	-		IAI47_10005	0.57	+0.4
2,116,670	-		IAI47_10005	0.57	+1.8
2,116,670	-		IAI47_10005	0.57	+1.8
2,116,722	+		IAI47_10005	0.61	-0.8
2,116,722	+		IAI47_10005	0.61	+1.5
2,116,722	+		IAI47_10005	0.61	-0.8
2,116,722	+		IAI47_10005	0.61	-0.9
2,116,722	+		IAI47_10005	0.61	+0.4
2,116,723	-		IAI47_10005	0.61	+0.4
2,116,723	-		IAI47_10005	0.61	-0.2
2,116,723	-		IAI47_10005	0.61	-0.2
2,116,723	-		IAI47_10005	0.61	+0.6
2,116,723	-		IAI47_10005	0.61	-0.4
2,116,723	-		IAI47_10005	0.61	+0.7
2,116,723	-		IAI47_10005	0.61	+0.4
2,116,723	-		IAI47_10005	0.61	+2.4
2,117,122	+		IAI47_10005	0.87	+0.2
2,117,168	-				+0.4
2,117,174	+				+2.7
2,117,175	-				+1.0
2,117,271	+				-1.5
2,117,272	-				+2.1
2,117,298	-				-0.1
2,117,331	+				+1.6
2,117,425	+				-0.1
2,117,426	-				+1.5
2,117,426	-				-1.5
2,117,545	-		IAI47_10010	0.21	+0.0
2,117,649	+		IAI47_10010	0.31	+0.4
2,117,649	+		IAI47_10010	0.31	+2.1
2,117,650	-		IAI47_10010	0.31	+0.2
2,117,650	-		IAI47_10010	0.31	+1.1
2,117,699	-		IAI47_10010	0.35	-1.4
2,117,805	+		IAI47_10010	0.46	-0.6
2,117,806	-		IAI47_10010	0.46	+0.5
2,117,806	-		IAI47_10010	0.46	+1.5
2,117,863	+		IAI47_10010	0.51	-0.9
2,117,864	-		IAI47_10010	0.51	+0.5
2,117,864	-		IAI47_10010	0.51	+0.8
2,117,913	+		IAI47_10010	0.56	+0.6
2,117,913	+		IAI47_10010	0.56	+0.6
2,117,913	+		IAI47_10010	0.56	+0.2
2,117,914	-		IAI47_10010	0.56	+0.5
2,117,914	-		IAI47_10010	0.56	-2.0
2,117,914	-		IAI47_10010	0.56	+0.9
2,117,914	-		IAI47_10010	0.56	+1.4
2,117,963	-		IAI47_10010	0.61	+0.5
2,118,108	+		IAI47_10010	0.75	+0.1
2,118,109	-		IAI47_10010	0.75	+0.5
2,118,171	+		IAI47_10010	0.81	+1.4
2,118,171	+		IAI47_10010	0.81	-0.2
2,118,172	-		IAI47_10010	0.81	-1.3
2,118,172	-		IAI47_10010	0.81	+1.4
2,118,241	-		IAI47_10010	0.88	+0.4
2,118,241	-		IAI47_10010	0.88	-1.8
2,118,244	+		IAI47_10010	0.88	-1.0
2,118,244	+		IAI47_10010	0.88	+1.2
2,118,244	+		IAI47_10010	0.88	-0.2
2,118,244	+		IAI47_10010	0.88	+1.4
2,118,245	-		IAI47_10010	0.88	+1.9
2,118,245	-		IAI47_10010	0.88	-0.4
2,118,245	-		IAI47_10010	0.88	-1.7
2,118,245	-		IAI47_10010	0.88	-0.1
2,118,245	-		IAI47_10010	0.88	+0.4
2,118,245	-		IAI47_10010	0.88	-0.2
2,118,248	-		IAI47_10010	0.88	+0.4
2,118,248	-		IAI47_10010	0.88	-0.8