Strain Fitness in Pantoea sp. MT58 around IAI47_06670

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,388,620	+				-1.1
1,388,620	+				+0.7
1,388,620	+				-0.1
1,388,664	+				-0.2
1,388,664	+				-0.6
1,388,665	-				-0.9
1,388,665	-				+1.0
1,388,776	+				+0.2
1,388,779	+				-1.6
1,388,779	+				+0.1
1,388,779	+				+0.7
1,388,780	-				+1.4
1,388,780	-				-1.1
1,388,780	-				-1.5
1,388,780	-				-0.3
1,388,792	+				-0.0
1,388,793	-				+0.3
1,388,800	+				-1.7
1,388,800	+				-0.7
1,388,800	+				+0.5
1,388,800	+				+0.3
1,388,801	-				+0.0
1,388,801	-				-0.1
1,388,833	+		IAI47_06665	0.13	+2.2
1,388,833	+		IAI47_06665	0.13	+1.3
1,388,834	-		IAI47_06665	0.13	+1.2
1,388,834	-		IAI47_06665	0.13	+0.3
1,388,915	-		IAI47_06665	0.23	+0.1
1,388,915	-		IAI47_06665	0.23	-0.1
1,388,915	-		IAI47_06665	0.23	-1.4
1,388,934	+		IAI47_06665	0.25	-0.1
1,388,934	+		IAI47_06665	0.25	-0.6
1,388,934	+		IAI47_06665	0.25	-1.6
1,388,935	-		IAI47_06665	0.25	+2.5
1,388,935	-		IAI47_06665	0.25	-1.7
1,388,935	-		IAI47_06665	0.25	+0.8
1,388,935	-		IAI47_06665	0.25	+1.3
1,389,028	+		IAI47_06665	0.36	-1.3
1,389,028	+		IAI47_06665	0.36	+0.6
1,389,028	+		IAI47_06665	0.36	+0.7
1,389,029	-		IAI47_06665	0.37	-1.4
1,389,055	+		IAI47_06665	0.40	+0.6
1,389,056	-		IAI47_06665	0.40	-0.6
1,389,056	-		IAI47_06665	0.40	+0.3
1,389,056	-		IAI47_06665	0.40	-1.2
1,389,073	+		IAI47_06665	0.42	-0.3
1,389,073	+		IAI47_06665	0.42	+1.3
1,389,074	-		IAI47_06665	0.42	+0.2
1,389,074	-		IAI47_06665	0.42	-0.1
1,389,074	-		IAI47_06665	0.42	-0.2
1,389,074	-		IAI47_06665	0.42	+0.9
1,389,109	+		IAI47_06665	0.46	+2.3
1,389,127	+		IAI47_06665	0.48	+0.4
1,389,128	-		IAI47_06665	0.48	+0.3
1,389,281	+		IAI47_06665	0.66	+0.1
1,389,282	-		IAI47_06665	0.66	-0.2
1,389,282	-		IAI47_06665	0.66	+0.2
1,389,282	-		IAI47_06665	0.66	+2.2
1,389,292	+		IAI47_06665	0.68	-0.2
1,389,292	+		IAI47_06665	0.68	-0.4
1,389,293	-		IAI47_06665	0.68	+1.8
1,389,344	-		IAI47_06665	0.74	-0.0
1,389,391	-		IAI47_06665	0.79	-1.0
1,389,391	-		IAI47_06665	0.79	-1.3
1,389,391	-		IAI47_06665	0.79	+0.5
1,389,391	-		IAI47_06665	0.79	+0.7
1,389,470	-		IAI47_06665	0.89	+0.5
1,389,494	+				+0.5
1,389,495	-				-1.5
1,389,495	-				+2.2
1,389,495	-				-0.8
1,389,495	-				+1.0
1,389,556	+				-0.5
1,389,558	+				-1.5
1,389,558	+				+1.6
1,389,558	+				+2.9
1,389,558	+				+0.7
1,389,559	-				+0.6
1,389,559	-				-0.1
1,389,559	-				+0.1
1,389,582	+				+1.0
1,389,582	+				-2.9
1,389,582	+				+0.6
1,389,583	-				-0.1
1,389,583	-				+0.3
1,389,583	-				-0.5
1,389,583	-				-0.6
1,389,680	+				-1.0
1,389,680	+				+2.3
1,389,681	-				-0.3
1,389,681	-				-0.2
1,389,681	-				+0.8
1,389,681	-				-0.6
1,389,722	+				+1.3
1,389,722	+				-1.8
1,389,723	-		IAI47_06670	0.10	-0.2
1,389,723	-		IAI47_06670	0.10	+0.0
1,389,723	-		IAI47_06670	0.10	+1.3
1,389,743	+		IAI47_06670	0.12	-0.9
1,389,835	+		IAI47_06670	0.21	-1.1
1,389,836	-		IAI47_06670	0.21	-1.8
1,389,836	-		IAI47_06670	0.21	-0.1
1,390,063	+		IAI47_06670	0.42	-0.2
1,390,067	+		IAI47_06670	0.43	-1.3
1,390,131	+		IAI47_06670	0.49	-0.7
1,390,131	+		IAI47_06670	0.49	+0.2
1,390,132	-		IAI47_06670	0.49	-1.1
1,390,132	-		IAI47_06670	0.49	+1.1
1,390,135	+		IAI47_06670	0.49	-0.2
1,390,135	+		IAI47_06670	0.49	-1.7
1,390,135	+		IAI47_06670	0.49	+0.1
1,390,135	+		IAI47_06670	0.49	+0.7
1,390,136	-		IAI47_06670	0.49	+0.7
1,390,136	-		IAI47_06670	0.49	+0.3
1,390,136	-		IAI47_06670	0.49	-0.1
1,390,136	-		IAI47_06670	0.49	+0.0
1,390,136	-		IAI47_06670	0.49	-0.2
1,390,174	+		IAI47_06670	0.53	-0.3
1,390,175	-		IAI47_06670	0.53	-1.9
1,390,175	-		IAI47_06670	0.53	-0.4
1,390,175	-		IAI47_06670	0.53	-0.1
1,390,175	-		IAI47_06670	0.53	-2.6
1,390,175	-		IAI47_06670	0.53	+0.6
1,390,205	+		IAI47_06670	0.56	-0.3
1,390,206	-		IAI47_06670	0.56	+2.6
1,390,206	-		IAI47_06670	0.56	-0.2
1,390,226	+		IAI47_06670	0.58	+1.1
1,390,318	+		IAI47_06670	0.66	-0.2
1,390,318	+		IAI47_06670	0.66	-0.6
1,390,318	+		IAI47_06670	0.66	+0.6
1,390,319	-		IAI47_06670	0.66	-1.2
1,390,319	-		IAI47_06670	0.66	-1.2
1,390,321	+		IAI47_06670	0.67	-1.8
1,390,321	+		IAI47_06670	0.67	-0.9
1,390,321	+		IAI47_06670	0.67	-1.3
1,390,321	+		IAI47_06670	0.67	+0.6
1,390,321	+		IAI47_06670	0.67	-0.4
1,390,322	-		IAI47_06670	0.67	-0.4
1,390,322	-		IAI47_06670	0.67	+1.0
1,390,322	-		IAI47_06670	0.67	-1.3
1,390,322	-		IAI47_06670	0.67	-1.0
1,390,322	-		IAI47_06670	0.67	-1.2
1,390,391	+		IAI47_06670	0.73	-0.6
1,390,391	+		IAI47_06670	0.73	+1.3
1,390,391	+		IAI47_06670	0.73	-0.1
1,390,391	+		IAI47_06670	0.73	+0.4
1,390,391	+		IAI47_06670	0.73	+0.0
1,390,392	-		IAI47_06670	0.73	+1.3
1,390,392	-		IAI47_06670	0.73	+0.0
1,390,392	-		IAI47_06670	0.73	-1.8
1,390,452	-		IAI47_06670	0.79	+1.3
1,390,486	+		IAI47_06670	0.82	-0.3
1,390,486	+		IAI47_06670	0.82	-0.9
1,390,486	+		IAI47_06670	0.82	+2.3
1,390,486	+		IAI47_06670	0.82	-0.4
1,390,487	-		IAI47_06670	0.82	+1.8
1,390,487	-		IAI47_06670	0.82	-0.7
1,390,488	+		IAI47_06670	0.82	+1.0
1,390,488	+		IAI47_06670	0.82	-0.7
1,390,489	-		IAI47_06670	0.83	-0.0
1,390,489	-		IAI47_06670	0.83	+0.6
1,390,489	-		IAI47_06670	0.83	-0.6
1,390,495	+		IAI47_06670	0.83	-0.8
1,390,496	-		IAI47_06670	0.83	-0.4
1,390,633	+				-1.7
1,390,633	+				-2.2
1,390,633	+				-1.5
1,390,634	-				-0.2
1,390,634	-				+0.4
1,390,652	-				+0.6
1,390,783	+				+0.8
1,390,783	+				-0.6
1,390,783	+				-0.4
1,390,784	-				+0.3
1,390,784	-				+1.9
1,390,784	-				-0.1
1,390,906	-		IAI47_06675	0.34	+1.0
1,391,027	+		IAI47_06675	0.66	+0.6
1,391,028	-		IAI47_06675	0.66	-0.1
1,391,028	-		IAI47_06675	0.66	-0.8
1,391,028	-		IAI47_06675	0.66	+1.3
1,391,028	-		IAI47_06675	0.66	-1.8
1,391,028	-		IAI47_06675	0.66	+0.0
1,391,119	+				-2.4
1,391,119	+				+2.7
1,391,119	+				+1.1
1,391,127	+				-0.4
1,391,127	+				-0.1
1,391,127	+				-0.7
1,391,127	+				-0.4
1,391,128	-				-2.4
1,391,128	-				+0.3
1,391,128	-				-1.9
1,391,128	-				-1.6
1,391,128	-				+0.8
1,391,151	+				+0.8
1,391,151	+				+1.3
1,391,151	+				+0.8
1,391,151	+				-0.4
1,391,171	+				+1.7
1,391,171	+				+0.2
1,391,171	+				+0.7
1,391,171	+				+0.6
1,391,171	+				-0.5
1,391,171	+				-0.4
1,391,172	-				-0.2
1,391,172	-				-0.1
1,391,172	-				+1.0
1,391,172	-				+0.5
1,391,172	-				-1.1
1,391,172	-				-1.8
1,391,338	+		IAI47_06680	0.20	-0.7
1,391,338	+		IAI47_06680	0.20	-0.9
1,391,338	+		IAI47_06680	0.20	+1.3
1,391,339	-		IAI47_06680	0.20	-0.4
1,391,362	-		IAI47_06680	0.23	+0.6
1,391,462	+		IAI47_06680	0.34	+2.1
1,391,462	+		IAI47_06680	0.34	-0.0
1,391,462	+		IAI47_06680	0.34	-1.2
1,391,463	-		IAI47_06680	0.35	-0.5
1,391,463	-		IAI47_06680	0.35	-1.3
1,391,463	-		IAI47_06680	0.35	+0.8
1,391,466	+		IAI47_06680	0.35	+0.0
1,391,466	+		IAI47_06680	0.35	-0.2
1,391,466	+		IAI47_06680	0.35	-0.8
1,391,466	+		IAI47_06680	0.35	+1.1
1,391,467	-		IAI47_06680	0.35	-1.1
1,391,467	-		IAI47_06680	0.35	+0.7
1,391,493	+		IAI47_06680	0.38	+0.3