Strain Fitness in Pantoea sp. MT58 around IAI47_05280

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,114,675	+				-0.6
1,114,676	-				-0.9
1,114,691	+				-0.2
1,114,691	+				-0.4
1,114,692	-				-0.8
1,114,692	-				-1.1
1,114,694	+				-0.8
1,114,694	+				+1.2
1,114,695	-				+0.5
1,114,695	-				+0.1
1,114,763	+				+0.2
1,114,783	+				-0.4
1,114,783	+				-0.3
1,114,783	+				-0.9
1,114,783	+				+0.8
1,114,783	+				+0.6
1,114,783	+				+1.1
1,114,784	-				-0.3
1,114,808	+				-1.2
1,114,809	-				+0.0
1,114,830	+				+2.3
1,114,832	+				-0.1
1,114,832	+				-0.7
1,114,833	-				+0.6
1,114,879	+		IAI47_05275	0.13	-0.6
1,114,879	+		IAI47_05275	0.13	+1.4
1,114,879	+		IAI47_05275	0.13	+0.4
1,114,880	-		IAI47_05275	0.13	+0.1
1,114,880	-		IAI47_05275	0.13	-0.6
1,114,945	+		IAI47_05275	0.22	-2.1
1,115,052	+		IAI47_05275	0.37	+0.2
1,115,053	-		IAI47_05275	0.37	+0.1
1,115,091	+		IAI47_05275	0.43	+2.0
1,115,192	+		IAI47_05275	0.57	-0.0
1,115,193	-		IAI47_05275	0.57	-0.6
1,115,254	+		IAI47_05275	0.65	+1.1
1,115,255	-		IAI47_05275	0.66	-0.6
1,115,335	+		IAI47_05275	0.77	+0.1
1,115,336	-		IAI47_05275	0.77	+0.4
1,115,407	+		IAI47_05275	0.87	-0.3
1,115,407	+		IAI47_05275	0.87	+0.4
1,115,408	-		IAI47_05275	0.87	+0.0
1,115,459	+				-1.0
1,115,459	+				+0.8
1,115,459	+				-0.6
1,115,460	-				+0.2
1,115,488	-				+0.0
1,115,488	-				+1.0
1,115,518	+				-0.5
1,115,518	+				-1.1
1,115,518	+				-0.3
1,115,519	-				+1.3
1,115,519	-				-0.6
1,115,519	-				-1.4
1,115,519	-				+1.0
1,115,519	-				-1.1
1,115,523	+				-0.9
1,115,523	-				+0.9
1,115,523	-				-1.0
1,115,523	-				+2.9
1,115,523	-				+2.1
1,115,523	-				+2.4
1,115,531	+				-0.8
1,115,571	-				-2.2
1,115,599	+				+1.1
1,115,599	+				-0.4
1,115,599	+				-0.3
1,115,599	+				+0.6
1,115,600	-				-0.1
1,115,600	-				+0.0
1,115,600	-				-0.6
1,115,675	+				+0.7
1,115,675	+				+1.7
1,115,675	+				+1.4
1,115,675	+				+1.7
1,115,675	+				-1.1
1,115,675	+				-0.3
1,115,675	+				-1.6
1,115,676	-				+2.7
1,115,676	-				+0.1
1,115,676	-				+3.3
1,115,676	-				+1.1
1,115,676	-				+0.7
1,115,676	-				+1.3
1,115,705	+				+1.8
1,115,706	-				-0.9
1,115,706	-				-0.6
1,115,751	+		IAI47_05280	0.13	+0.1
1,115,752	-		IAI47_05280	0.13	-1.9
1,115,775	+		IAI47_05280	0.15	-2.6
1,115,775	+		IAI47_05280	0.15	-0.3
1,115,776	-		IAI47_05280	0.16	-0.5
1,115,785	+		IAI47_05280	0.17	+0.2
1,115,785	+		IAI47_05280	0.17	-1.9
1,115,785	+		IAI47_05280	0.17	-0.2
1,115,786	-		IAI47_05280	0.17	+0.8
1,115,788	+		IAI47_05280	0.17	+0.9
1,115,789	-		IAI47_05280	0.17	-0.4
1,115,789	-		IAI47_05280	0.17	+0.2
1,115,789	-		IAI47_05280	0.17	-1.0
1,115,789	-		IAI47_05280	0.17	-0.8
1,115,789	-		IAI47_05280	0.17	-0.1
1,115,794	+		IAI47_05280	0.18	+1.5
1,115,895	+		IAI47_05280	0.29	+2.4
1,115,895	+		IAI47_05280	0.29	-0.2
1,115,896	-		IAI47_05280	0.29	+0.4
1,115,896	-		IAI47_05280	0.29	-0.7
1,115,922	+		IAI47_05280	0.32	+0.1
1,115,922	+		IAI47_05280	0.32	+2.5
1,115,923	-		IAI47_05280	0.33	-0.3
1,115,923	-		IAI47_05280	0.33	+0.5
1,115,923	-		IAI47_05280	0.33	+2.5
1,115,923	-		IAI47_05280	0.33	-1.6
1,115,959	+		IAI47_05280	0.37	-0.4
1,115,959	+		IAI47_05280	0.37	-0.6
1,115,959	+		IAI47_05280	0.37	+0.7
1,115,959	+		IAI47_05280	0.37	-0.7
1,115,959	+		IAI47_05280	0.37	-0.0
1,115,959	+		IAI47_05280	0.37	+0.4
1,115,960	-		IAI47_05280	0.37	-1.2
1,115,960	-		IAI47_05280	0.37	+0.4
1,115,960	-		IAI47_05280	0.37	-1.3
1,115,983	+		IAI47_05280	0.39	+0.6
1,115,983	+		IAI47_05280	0.39	+1.5
1,115,983	+		IAI47_05280	0.39	-1.5
1,115,984	-		IAI47_05280	0.40	+0.1
1,115,984	-		IAI47_05280	0.40	-0.7
1,116,040	+		IAI47_05280	0.46	-1.7
1,116,040	+		IAI47_05280	0.46	-0.8
1,116,040	+		IAI47_05280	0.46	-0.6
1,116,040	+		IAI47_05280	0.46	+1.7
1,116,040	+		IAI47_05280	0.46	-0.0
1,116,040	+		IAI47_05280	0.46	-0.1
1,116,040	+		IAI47_05280	0.46	+2.6
1,116,041	-		IAI47_05280	0.46	+0.9
1,116,041	-		IAI47_05280	0.46	-0.6
1,116,041	-		IAI47_05280	0.46	-1.4
1,116,041	-		IAI47_05280	0.46	-0.4
1,116,041	-		IAI47_05280	0.46	+0.7
1,116,041	-		IAI47_05280	0.46	+0.4
1,116,041	-		IAI47_05280	0.46	+1.1
1,116,041	-		IAI47_05280	0.46	-1.2
1,116,041	-		IAI47_05280	0.46	-1.3
1,116,041	-		IAI47_05280	0.46	+0.6
1,116,041	-		IAI47_05280	0.46	+0.1
1,116,064	+		IAI47_05280	0.49	+1.8
1,116,064	+		IAI47_05280	0.49	+0.3
1,116,064	+		IAI47_05280	0.49	+2.3
1,116,064	+		IAI47_05280	0.49	+0.0
1,116,065	-		IAI47_05280	0.49	-0.6
1,116,065	-		IAI47_05280	0.49	+0.4
1,116,065	-		IAI47_05280	0.49	-0.2
1,116,082	+		IAI47_05280	0.51	+2.8
1,116,082	+		IAI47_05280	0.51	+1.1
1,116,133	+		IAI47_05280	0.57	+0.5
1,116,133	+		IAI47_05280	0.57	+0.7
1,116,134	-		IAI47_05280	0.57	-0.2
1,116,134	-		IAI47_05280	0.57	-1.6
1,116,180	+		IAI47_05280	0.62	-0.5
1,116,181	-		IAI47_05280	0.62	+2.8
1,116,190	-		IAI47_05280	0.63	+0.1
1,116,190	-		IAI47_05280	0.63	-1.4
1,116,190	-		IAI47_05280	0.63	+0.1
1,116,194	+		IAI47_05280	0.64	+0.0
1,116,194	+		IAI47_05280	0.64	+1.0
1,116,194	+		IAI47_05280	0.64	+0.9
1,116,195	-		IAI47_05280	0.64	-1.4
1,116,292	+		IAI47_05280	0.75	-0.7
1,116,292	+		IAI47_05280	0.75	+0.8
1,116,292	+		IAI47_05280	0.75	+0.8
1,116,292	+		IAI47_05280	0.75	+1.3
1,116,292	+		IAI47_05280	0.75	-0.5
1,116,292	+		IAI47_05280	0.75	-0.6
1,116,292	+		IAI47_05280	0.75	-1.3
1,116,292	+		IAI47_05280	0.75	-0.3
1,116,292	+		IAI47_05280	0.75	-0.7
1,116,292	+		IAI47_05280	0.75	+2.2
1,116,292	+		IAI47_05280	0.75	+0.5
1,116,292	+		IAI47_05280	0.75	-0.3
1,116,292	+		IAI47_05280	0.75	-0.9
1,116,292	+		IAI47_05280	0.75	+0.4
1,116,292	+		IAI47_05280	0.75	+2.0
1,116,292	+		IAI47_05280	0.75	-0.1
1,116,293	-		IAI47_05280	0.75	-1.1
1,116,293	-		IAI47_05280	0.75	+2.1
1,116,293	-		IAI47_05280	0.75	+0.9
1,116,293	-		IAI47_05280	0.75	+3.0
1,116,293	-		IAI47_05280	0.75	+0.9
1,116,293	-		IAI47_05280	0.75	-0.1
1,116,293	-		IAI47_05280	0.75	-1.0
1,116,293	-		IAI47_05280	0.75	+1.8
1,116,293	-		IAI47_05280	0.75	-1.3
1,116,293	-		IAI47_05280	0.75	+1.3
1,116,293	-		IAI47_05280	0.75	+0.3
1,116,293	-		IAI47_05280	0.75	-1.3
1,116,293	-		IAI47_05280	0.75	-1.0
1,116,293	-		IAI47_05280	0.75	-0.1
1,116,293	-		IAI47_05280	0.75	-0.3
1,116,293	-		IAI47_05280	0.75	+1.8
1,116,293	-		IAI47_05280	0.75	+1.4
1,116,294	+		IAI47_05280	0.75	-1.9
1,116,294	+		IAI47_05280	0.75	-1.3
1,116,294	+		IAI47_05280	0.75	+0.4
1,116,294	+		IAI47_05280	0.75	-0.0
1,116,294	+		IAI47_05280	0.75	-0.4
1,116,294	+		IAI47_05280	0.75	-0.3
1,116,294	+		IAI47_05280	0.75	-0.0
1,116,294	+		IAI47_05280	0.75	+0.3
1,116,295	-		IAI47_05280	0.75	+2.5
1,116,295	-		IAI47_05280	0.75	-0.7
1,116,295	-		IAI47_05280	0.75	-1.7
1,116,295	-		IAI47_05280	0.75	+2.4
1,116,295	-		IAI47_05280	0.75	+0.4
1,116,295	-		IAI47_05280	0.75	+1.1
1,116,295	-		IAI47_05280	0.75	+0.4
1,116,295	-		IAI47_05280	0.75	+1.2
1,116,295	-		IAI47_05280	0.75	-2.2
1,116,399	-		IAI47_05280	0.87	-1.9
1,116,415	-		IAI47_05280	0.89	+0.1
1,116,415	-		IAI47_05280	0.89	-0.9
1,116,439	+				+0.7
1,116,439	+				-1.8
1,116,439	+				+0.6
1,116,439	+				-0.6
1,116,439	+				-1.3
1,116,439	+				+0.1
1,116,440	-				+1.1
1,116,440	-				-0.1
1,116,440	-				-0.3
1,116,440	-				+0.7
1,116,440	-				+1.1
1,116,440	-				+0.1
1,116,451	-				+0.3
1,116,524	+				-1.0
1,116,524	+				+0.5
1,116,524	+				-1.2
1,116,524	+				+0.9
1,116,524	+				+1.1
1,116,524	+				-0.2
1,116,524	+				-1.1
1,116,524	+				+1.2
1,116,525	-				-0.1
1,116,525	-				+1.3
1,116,634	+				-1.9
1,116,635	-				-0.8
1,116,635	-				-0.4
1,116,677	+				-0.7
1,116,677	+				-2.1
1,116,677	+				-0.1
1,116,677	+				-1.6
1,116,677	+				-0.4
1,116,677	+				+1.5
1,116,678	-				+0.2
1,116,678	-				+1.1
1,116,678	-				+0.2
1,116,678	-				+0.1
1,116,678	-				-1.8
1,116,678	-				+2.5
1,116,803	+		IAI47_05285	0.15	-0.2
1,116,803	+		IAI47_05285	0.15	-2.2
1,116,803	+		IAI47_05285	0.15	+1.8
1,116,803	+		IAI47_05285	0.15	-0.6
1,116,803	+		IAI47_05285	0.15	-0.8
1,116,803	+		IAI47_05285	0.15	+0.4
1,116,804	-		IAI47_05285	0.15	-0.7
1,116,804	-		IAI47_05285	0.15	-2.0
1,116,815	-		IAI47_05285	0.16	-1.2
1,116,952	+		IAI47_05285	0.23	+1.2
1,116,952	+		IAI47_05285	0.23	-0.5
1,116,952	+		IAI47_05285	0.23	-1.0
1,116,953	-		IAI47_05285	0.23	+1.8
1,116,953	-		IAI47_05285	0.23	+2.8
1,116,953	-		IAI47_05285	0.23	-0.0
1,116,953	-		IAI47_05285	0.23	+4.5
1,117,110	-		IAI47_05285	0.31	-1.1
1,117,312	+		IAI47_05285	0.41	+0.2
1,117,363	+		IAI47_05285	0.44	+1.2
1,117,363	+		IAI47_05285	0.44	-0.2
1,117,363	+		IAI47_05285	0.44	-1.0
1,117,363	+		IAI47_05285	0.44	+1.2
1,117,363	+		IAI47_05285	0.44	+1.0
1,117,364	-		IAI47_05285	0.44	-0.5
1,117,364	-		IAI47_05285	0.44	-0.6
1,117,372	-		IAI47_05285	0.44	+1.5
1,117,372	-		IAI47_05285	0.44	+1.9
1,117,394	+		IAI47_05285	0.45	-0.4
1,117,394	+		IAI47_05285	0.45	-0.6
1,117,400	+		IAI47_05285	0.46	-0.7
1,117,400	+		IAI47_05285	0.46	+0.9
1,117,400	+		IAI47_05285	0.46	+0.9
1,117,400	+		IAI47_05285	0.46	-1.6
1,117,401	-		IAI47_05285	0.46	+0.2
1,117,401	-		IAI47_05285	0.46	-0.5
1,117,401	-		IAI47_05285	0.46	-0.3
1,117,401	-		IAI47_05285	0.46	+1.9
1,117,431	+		IAI47_05285	0.47	-0.1
1,117,431	+		IAI47_05285	0.47	+0.1
1,117,431	+		IAI47_05285	0.47	+1.4
1,117,431	+		IAI47_05285	0.47	+0.2
1,117,432	-		IAI47_05285	0.47	+2.7
1,117,432	-		IAI47_05285	0.47	-1.0
1,117,432	-		IAI47_05285	0.47	+0.7
1,117,432	-		IAI47_05285	0.47	+1.9
1,117,434	+		IAI47_05285	0.47	+1.4
1,117,434	+		IAI47_05285	0.47	+0.2
1,117,434	+		IAI47_05285	0.47	+0.4
1,117,434	+		IAI47_05285	0.47	+2.7
1,117,434	+		IAI47_05285	0.47	+0.6
1,117,435	-		IAI47_05285	0.48	+0.3
1,117,435	-		IAI47_05285	0.48	-0.5
1,117,435	-		IAI47_05285	0.48	+0.9
1,117,435	-		IAI47_05285	0.48	-0.8
1,117,435	-		IAI47_05285	0.48	+1.3
1,117,435	-		IAI47_05285	0.48	-0.8
1,117,435	-		IAI47_05285	0.48	+0.3