Strain Fitness in Pantoea sp. MT58 around IAI47_18220

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,875,833	+		IAI47_18215	0.46	+1.1
3,876,097	-		IAI47_18215	0.64	-0.9
3,876,587	-				-0.8
3,876,631	-				-0.0
3,876,631	-				-0.5
3,876,631	-				+0.1
3,876,631	-				+0.1
3,876,631	-				+0.5
3,876,634	-				-0.2
3,876,634	-				-2.1
3,876,634	-				-0.9
3,876,669	+				-1.1
3,876,724	+		IAI47_18220	0.13	-0.5
3,876,725	-		IAI47_18220	0.13	+1.7
3,876,725	-		IAI47_18220	0.13	-0.8
3,876,725	-		IAI47_18220	0.13	-0.8
3,876,729	+		IAI47_18220	0.14	+0.3
3,876,729	+		IAI47_18220	0.14	+0.2
3,876,730	-		IAI47_18220	0.14	+0.6
3,876,730	-		IAI47_18220	0.14	-0.3
3,876,730	-		IAI47_18220	0.14	-2.1
3,876,730	-		IAI47_18220	0.14	+1.0
3,876,795	+		IAI47_18220	0.24	+0.2
3,876,795	+		IAI47_18220	0.24	-0.2
3,876,795	+		IAI47_18220	0.24	-2.4
3,876,796	-		IAI47_18220	0.24	+0.6
3,876,826	+		IAI47_18220	0.29	-1.3
3,876,827	-		IAI47_18220	0.29	-0.9
3,876,884	+		IAI47_18220	0.39	-0.7
3,876,884	+		IAI47_18220	0.39	-1.6
3,876,884	+		IAI47_18220	0.39	-0.5
3,876,884	+		IAI47_18220	0.39	+0.2
3,876,884	+		IAI47_18220	0.39	-1.4
3,876,885	-		IAI47_18220	0.39	+0.3
3,876,885	-		IAI47_18220	0.39	+0.3
3,876,885	-		IAI47_18220	0.39	-0.8
3,876,885	-		IAI47_18220	0.39	+2.0
3,876,885	-		IAI47_18220	0.39	+0.8
3,876,885	-		IAI47_18220	0.39	-2.6
3,876,885	-		IAI47_18220	0.39	+0.4
3,876,910	+		IAI47_18220	0.43	+3.7
3,876,910	+		IAI47_18220	0.43	-1.2
3,876,910	+		IAI47_18220	0.43	-1.4
3,876,910	+		IAI47_18220	0.43	-0.5
3,876,911	-		IAI47_18220	0.43	+0.2
3,876,921	+		IAI47_18220	0.45	+1.2
3,876,921	+		IAI47_18220	0.45	-0.4
3,876,922	-		IAI47_18220	0.45	-0.3
3,876,922	-		IAI47_18220	0.45	+1.8
3,876,952	+		IAI47_18220	0.50	-0.7
3,876,952	+		IAI47_18220	0.50	+0.9
3,876,953	-		IAI47_18220	0.50	-0.2
3,876,955	+		IAI47_18220	0.50	+2.1
3,876,956	-		IAI47_18220	0.50	+1.4
3,876,956	-		IAI47_18220	0.50	+0.6
3,876,956	-		IAI47_18220	0.50	+0.6
3,876,974	+		IAI47_18220	0.53	-0.5
3,876,974	+		IAI47_18220	0.53	-2.4
3,876,975	-		IAI47_18220	0.53	-0.0
3,876,986	+		IAI47_18220	0.55	-1.1
3,876,987	-		IAI47_18220	0.55	-0.3
3,877,028	+		IAI47_18220	0.62	+0.5
3,877,028	+		IAI47_18220	0.62	+0.0
3,877,191	-		IAI47_18220	0.88	+0.2
3,877,191	-		IAI47_18220	0.88	-0.9
3,877,247	+				+4.4
3,877,247	+				-0.1
3,877,322	-				+1.0
3,877,331	-				+0.6
3,877,344	+				-0.5
3,877,345	-				+0.8
3,877,364	-				-1.7
3,877,375	+				-1.4
3,877,375	+				-1.2
3,877,375	+				+3.3
3,877,376	-				-0.2
3,877,376	-				+0.8
3,877,376	-				-0.2
3,877,376	-				-1.4
3,877,415	+		IAI47_18225	0.11	+0.7
3,877,416	-		IAI47_18225	0.12	+0.6
3,877,416	-		IAI47_18225	0.12	+0.5
3,877,426	+		IAI47_18225	0.12	-0.6
3,877,426	+		IAI47_18225	0.12	+1.9
3,877,426	+		IAI47_18225	0.12	-0.7
3,877,426	+		IAI47_18225	0.12	+0.6
3,877,427	-		IAI47_18225	0.12	-0.4
3,877,427	-		IAI47_18225	0.12	+0.4
3,877,427	-		IAI47_18225	0.12	+0.4
3,877,429	+		IAI47_18225	0.13	-1.2
3,877,429	+		IAI47_18225	0.13	-0.1
3,877,429	+		IAI47_18225	0.13	+1.8
3,877,429	+		IAI47_18225	0.13	+0.7
3,877,429	+		IAI47_18225	0.13	-0.9
3,877,430	-		IAI47_18225	0.13	-2.5
3,877,430	-		IAI47_18225	0.13	-0.6
3,877,430	-		IAI47_18225	0.13	+0.9
3,877,430	-		IAI47_18225	0.13	-0.5
3,877,430	-		IAI47_18225	0.13	-0.5
3,877,430	-		IAI47_18225	0.13	-1.0
3,877,430	-		IAI47_18225	0.13	-0.5
3,877,430	-		IAI47_18225	0.13	+0.0
3,877,430	-		IAI47_18225	0.13	-2.5
3,877,431	+		IAI47_18225	0.13	+1.4
3,877,431	+		IAI47_18225	0.13	-2.2
3,877,431	+		IAI47_18225	0.13	+0.2
3,877,431	+		IAI47_18225	0.13	+1.0
3,877,431	+		IAI47_18225	0.13	-0.8
3,877,431	+		IAI47_18225	0.13	-0.2
3,877,431	+		IAI47_18225	0.13	+0.7
3,877,431	+		IAI47_18225	0.13	-0.3
3,877,431	+		IAI47_18225	0.13	-1.0
3,877,431	+		IAI47_18225	0.13	+0.4
3,877,431	+		IAI47_18225	0.13	-0.6
3,877,431	+		IAI47_18225	0.13	+0.9
3,877,431	+		IAI47_18225	0.13	-1.8
3,877,431	+		IAI47_18225	0.13	-0.6
3,877,432	-		IAI47_18225	0.13	-1.0
3,877,432	-		IAI47_18225	0.13	-0.9
3,877,432	-		IAI47_18225	0.13	+0.3
3,877,432	-		IAI47_18225	0.13	+2.0
3,877,432	-		IAI47_18225	0.13	+1.6
3,877,432	-		IAI47_18225	0.13	+1.9
3,877,432	-		IAI47_18225	0.13	-0.8
3,877,432	-		IAI47_18225	0.13	+2.2
3,877,432	-		IAI47_18225	0.13	-1.1
3,877,432	-		IAI47_18225	0.13	+2.1
3,877,432	-		IAI47_18225	0.13	+0.3
3,877,451	+		IAI47_18225	0.14	-0.3
3,877,451	+		IAI47_18225	0.14	-0.3
3,877,451	+		IAI47_18225	0.14	-1.3
3,877,452	-		IAI47_18225	0.14	-1.8
3,877,454	+		IAI47_18225	0.14	-0.4
3,877,454	+		IAI47_18225	0.14	+2.6
3,877,454	+		IAI47_18225	0.14	+1.1
3,877,454	+		IAI47_18225	0.14	-0.8
3,877,454	+		IAI47_18225	0.14	-1.2
3,877,454	+		IAI47_18225	0.14	-1.7
3,877,454	+		IAI47_18225	0.14	-0.1
3,877,454	+		IAI47_18225	0.14	-1.3
3,877,454	+		IAI47_18225	0.14	-0.6
3,877,454	+		IAI47_18225	0.14	-0.3
3,877,455	-		IAI47_18225	0.14	+1.2
3,877,455	-		IAI47_18225	0.14	-0.4
3,877,455	-		IAI47_18225	0.14	+0.0
3,877,455	-		IAI47_18225	0.14	-0.9
3,877,455	-		IAI47_18225	0.14	-1.5
3,877,455	-		IAI47_18225	0.14	-1.2
3,877,455	-		IAI47_18225	0.14	-0.2
3,877,455	-		IAI47_18225	0.14	-1.2
3,877,455	-		IAI47_18225	0.14	+0.2
3,877,455	-		IAI47_18225	0.14	-0.4
3,877,491	+		IAI47_18225	0.17	-1.4
3,877,491	+		IAI47_18225	0.17	-0.4
3,877,492	-		IAI47_18225	0.17	+0.1
3,877,493	-		IAI47_18225	0.17	-0.3
3,877,498	-		IAI47_18225	0.18	+0.5
3,877,540	+		IAI47_18225	0.21	-1.3
3,877,540	+		IAI47_18225	0.21	+0.0
3,877,541	-		IAI47_18225	0.21	-0.2
3,877,541	-		IAI47_18225	0.21	-0.4
3,877,541	-		IAI47_18225	0.21	-0.2
3,877,597	+		IAI47_18225	0.25	-2.0
3,877,597	+		IAI47_18225	0.25	-1.4
3,877,598	-		IAI47_18225	0.25	+0.2
3,877,598	-		IAI47_18225	0.25	-1.2
3,877,598	-		IAI47_18225	0.25	+1.1
3,877,598	-		IAI47_18225	0.25	+1.2
3,877,598	-		IAI47_18225	0.25	+0.5
3,877,682	-		IAI47_18225	0.32	+0.8
3,877,704	+		IAI47_18225	0.33	-0.8
3,877,704	+		IAI47_18225	0.33	-1.6
3,877,786	-		IAI47_18225	0.39	+0.2
3,877,786	-		IAI47_18225	0.39	+1.2
3,877,809	+		IAI47_18225	0.41	+0.3
3,877,809	+		IAI47_18225	0.41	+2.8
3,877,809	+		IAI47_18225	0.41	-2.0
3,877,809	+		IAI47_18225	0.41	-1.9
3,877,810	-		IAI47_18225	0.41	-0.5
3,877,810	-		IAI47_18225	0.41	+0.0
3,877,810	-		IAI47_18225	0.41	+0.2
3,877,834	-		IAI47_18225	0.43	+0.3
3,877,842	+		IAI47_18225	0.44	-0.5
3,877,842	+		IAI47_18225	0.44	+0.0
3,877,842	+		IAI47_18225	0.44	+1.2
3,877,843	-		IAI47_18225	0.44	+0.4
3,877,908	+		IAI47_18225	0.48	-1.3
3,877,908	+		IAI47_18225	0.48	-0.9
3,877,908	+		IAI47_18225	0.48	-0.7
3,877,908	+		IAI47_18225	0.48	+0.2
3,877,908	+		IAI47_18225	0.48	-1.3
3,877,909	-		IAI47_18225	0.49	+2.5
3,877,909	-		IAI47_18225	0.49	+1.5
3,877,909	-		IAI47_18225	0.49	+0.9
3,877,945	+		IAI47_18225	0.51	-2.4
3,877,945	+		IAI47_18225	0.51	+2.9
3,877,945	+		IAI47_18225	0.51	-1.2
3,877,945	+		IAI47_18225	0.51	+0.3
3,877,945	+		IAI47_18225	0.51	+0.3
3,877,945	+		IAI47_18225	0.51	-1.2
3,877,945	+		IAI47_18225	0.51	-0.5
3,877,946	-		IAI47_18225	0.51	+1.1
3,877,992	+		IAI47_18225	0.55	+0.5
3,877,992	+		IAI47_18225	0.55	+1.9
3,877,992	+		IAI47_18225	0.55	-2.4
3,877,992	+		IAI47_18225	0.55	-0.4
3,877,992	+		IAI47_18225	0.55	-0.8
3,877,993	-		IAI47_18225	0.55	-1.5
3,877,993	-		IAI47_18225	0.55	-0.3
3,877,993	-		IAI47_18225	0.55	+0.5
3,877,993	-		IAI47_18225	0.55	-0.0
3,878,018	+		IAI47_18225	0.57	-1.9
3,878,018	+		IAI47_18225	0.57	-0.7
3,878,018	+		IAI47_18225	0.57	-1.8
3,878,019	-		IAI47_18225	0.57	-2.1
3,878,100	+		IAI47_18225	0.63	-0.1
3,878,101	-		IAI47_18225	0.63	+0.3
3,878,101	-		IAI47_18225	0.63	+1.3
3,878,104	-		IAI47_18225	0.63	-0.2
3,878,113	+		IAI47_18225	0.64	-1.3
3,878,149	+		IAI47_18225	0.67	+0.1
3,878,150	-		IAI47_18225	0.67	+1.7
3,878,158	+		IAI47_18225	0.67	-1.5
3,878,158	+		IAI47_18225	0.67	-0.3
3,878,159	-		IAI47_18225	0.67	+0.7
3,878,159	-		IAI47_18225	0.67	-1.5
3,878,159	-		IAI47_18225	0.67	-0.0
3,878,209	+		IAI47_18225	0.71	-0.7
3,878,209	+		IAI47_18225	0.71	-0.7
3,878,209	+		IAI47_18225	0.71	-3.0
3,878,209	+		IAI47_18225	0.71	-1.9
3,878,210	-		IAI47_18225	0.71	-1.2
3,878,210	-		IAI47_18225	0.71	+0.1
3,878,211	+		IAI47_18225	0.71	-1.0
3,878,211	+		IAI47_18225	0.71	-0.1
3,878,211	+		IAI47_18225	0.71	+0.1
3,878,211	+		IAI47_18225	0.71	-0.9
3,878,211	+		IAI47_18225	0.71	+0.4
3,878,212	-		IAI47_18225	0.71	+0.7
3,878,212	-		IAI47_18225	0.71	-1.0
3,878,212	-		IAI47_18225	0.71	+0.2
3,878,212	-		IAI47_18225	0.71	-0.0
3,878,212	-		IAI47_18225	0.71	+1.7
3,878,212	-		IAI47_18225	0.71	-0.9
3,878,221	+		IAI47_18225	0.72	-0.0
3,878,222	-		IAI47_18225	0.72	-0.2
3,878,222	-		IAI47_18225	0.72	-0.9
3,878,222	-		IAI47_18225	0.72	+1.0
3,878,222	-		IAI47_18225	0.72	+2.1
3,878,222	-		IAI47_18225	0.72	+0.3
3,878,222	-		IAI47_18225	0.72	-0.7