Strain Fitness in Pantoea sp. MT58 around IAI47_17320

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,667,626	+				-1.1
3,667,626	+				-0.6
3,667,627	-				+0.1
3,667,627	-				+2.1
3,667,657	+				+0.3
3,667,661	+				-1.0
3,667,698	+				-0.6
3,667,698	+				+1.2
3,667,699	-				-0.8
3,667,699	-				-1.4
3,667,699	-				-0.2
3,667,699	-				+1.5
3,667,699	-				+1.6
3,667,756	-		IAI47_17315	0.10	-2.2
3,667,779	+		IAI47_17315	0.15	-0.8
3,667,779	+		IAI47_17315	0.15	-1.3
3,667,779	+		IAI47_17315	0.15	+3.5
3,667,779	+		IAI47_17315	0.15	-1.0
3,667,779	+		IAI47_17315	0.15	-2.0
3,667,779	+		IAI47_17315	0.15	-0.3
3,667,780	-		IAI47_17315	0.16	-2.8
3,667,780	-		IAI47_17315	0.16	+0.0
3,667,780	-		IAI47_17315	0.16	-0.8
3,667,780	-		IAI47_17315	0.16	-0.5
3,667,780	-		IAI47_17315	0.16	+2.6
3,667,781	+		IAI47_17315	0.16	-1.3
3,667,781	+		IAI47_17315	0.16	-1.1
3,667,782	-		IAI47_17315	0.16	+0.4
3,667,782	-		IAI47_17315	0.16	+0.4
3,667,782	-		IAI47_17315	0.16	-0.2
3,667,859	-		IAI47_17315	0.33	+0.1
3,667,859	-		IAI47_17315	0.33	-0.6
3,667,859	-		IAI47_17315	0.33	+0.1
3,667,952	-		IAI47_17315	0.53	-1.0
3,667,977	+		IAI47_17315	0.58	-0.8
3,668,004	+		IAI47_17315	0.64	-0.9
3,668,004	+		IAI47_17315	0.64	-1.2
3,668,004	+		IAI47_17315	0.64	-1.0
3,668,005	-		IAI47_17315	0.64	-0.5
3,668,076	+		IAI47_17315	0.80	-0.4
3,668,076	+		IAI47_17315	0.80	-0.5
3,668,077	-		IAI47_17315	0.80	+0.4
3,668,077	-		IAI47_17315	0.80	+2.0
3,668,077	-		IAI47_17315	0.80	+1.1
3,668,077	-		IAI47_17315	0.80	-0.6
3,668,126	-				+0.3
3,668,149	+				+0.5
3,668,149	+				-1.0
3,668,150	-				-0.1
3,668,150	-				+0.3
3,668,150	-				+1.5
3,668,152	+				+0.5
3,668,153	-				+0.4
3,668,153	-				-0.3
3,668,172	+				-0.0
3,668,172	+				+0.1
3,668,172	+				+1.8
3,668,172	+				-0.1
3,668,172	+				+0.4
3,668,173	-				+2.4
3,668,173	-				+4.0
3,668,173	-				-0.0
3,668,173	-				-0.0
3,668,182	+				+2.6
3,668,182	+				+0.1
3,668,182	+				-1.5
3,668,182	+				-0.3
3,668,182	+				-0.4
3,668,182	+				+0.1
3,668,182	+				-2.0
3,668,182	+				-0.2
3,668,182	+				+0.7
3,668,182	+				+1.3
3,668,183	-				+1.4
3,668,183	-				+0.7
3,668,183	-				-0.1
3,668,183	-				-1.5
3,668,183	-				+0.4
3,668,183	-				+0.1
3,668,183	-				-0.4
3,668,186	+				+1.1
3,668,186	+				+0.3
3,668,186	+				-1.5
3,668,186	+				-0.4
3,668,187	-				+0.0
3,668,240	+				+0.3
3,668,240	+				+1.1
3,668,240	+				+0.3
3,668,240	+				+0.0
3,668,240	+				+1.6
3,668,241	-				-0.5
3,668,241	-				+0.4
3,668,241	-				+0.2
3,668,241	-				+1.8
3,668,328	+				-0.2
3,668,328	+				+1.3
3,668,329	-				-1.0
3,668,329	-				-0.4
3,668,351	+				+1.1
3,668,351	+				-0.6
3,668,351	+				-0.2
3,668,351	+				-1.0
3,668,351	+				+1.8
3,668,352	-				+0.9
3,668,352	-				-1.2
3,668,352	-				+1.0
3,668,378	-				-0.8
3,668,378	-				-1.0
3,668,389	+				+0.5
3,668,389	+				+0.2
3,668,389	+				-0.7
3,668,389	+				+0.3
3,668,390	-				-0.3
3,668,390	-				+0.3
3,668,419	+				-0.7
3,668,419	+				+0.2
3,668,419	+				+1.2
3,668,419	+				+0.3
3,668,420	-				+0.1
3,668,422	+				+1.6
3,668,422	+				-1.8
3,668,422	+				-1.7
3,668,422	+				-0.2
3,668,422	+				+0.2
3,668,422	+				-0.1
3,668,422	+				+2.2
3,668,422	+				-0.1
3,668,422	+				-1.2
3,668,423	-				+0.5
3,668,423	-				-0.7
3,668,423	-				-0.1
3,668,423	-				+0.4
3,668,423	-				+1.1
3,668,423	-				+0.3
3,668,423	-				+0.7
3,668,423	-				+0.1
3,668,423	-				+0.7
3,668,423	-				-0.2
3,668,423	-				+2.0
3,668,423	-				+0.7
3,668,423	-				-0.5
3,668,423	-				-0.5
3,668,423	-				+0.0
3,668,423	-				+0.3
3,668,423	-				+1.6
3,668,423	-				-1.9
3,668,451	+				-0.2
3,668,451	+				+1.0
3,668,451	+				-0.8
3,668,451	+				+0.1
3,668,451	+				+0.4
3,668,452	-				-0.1
3,668,452	-				-2.9
3,668,474	-				-0.3
3,668,485	+				-1.4
3,668,485	+				-2.8
3,668,485	+				-1.7
3,668,485	+				+0.5
3,668,485	+				+0.4
3,668,485	+				-0.2
3,668,485	+				-2.3
3,668,485	+				+1.3
3,668,485	+				+0.3
3,668,486	-				-0.1
3,668,486	-				-1.9
3,668,486	-				+2.8
3,668,486	-				-0.1
3,668,486	-				-1.0
3,668,494	+				+0.1
3,668,495	-				-0.0
3,668,495	-				+0.5
3,668,533	-				+0.7
3,668,533	-				+1.6
3,668,561	+				-1.0
3,668,561	+				-0.2
3,668,561	+				+2.4
3,668,561	+				+0.8
3,668,561	+				-0.7
3,668,562	-				-1.6
3,668,562	-				-0.7
3,668,562	-				+0.2
3,668,562	-				-1.7
3,668,564	+				-1.0
3,668,564	+				-0.2
3,668,564	+				-0.0
3,668,564	+				-1.2
3,668,564	+				-0.7
3,668,564	+				-0.1
3,668,564	+				-2.1
3,668,564	+				-1.8
3,668,564	+				+1.1
3,668,565	-				-0.6
3,668,565	-				-1.3
3,668,565	-				+0.1
3,668,565	-				+1.6
3,668,565	-				-0.4
3,668,565	-				-0.2
3,668,565	-				-1.4
3,668,565	-				-1.1
3,668,565	-				+1.1
3,668,565	-				+1.5
3,668,565	-				-0.0
3,668,575	+				-0.1
3,668,576	-				+0.4
3,668,576	-				-0.2
3,668,576	-				-3.0
3,668,576	-				-0.3
3,668,600	+				+0.4
3,668,601	-				+1.7
3,668,602	+				-0.3
3,668,683	+		IAI47_17320	0.13	-1.0
3,668,684	-		IAI47_17320	0.13	+0.5
3,668,699	-		IAI47_17320	0.14	+1.0
3,668,728	+		IAI47_17320	0.16	-1.2
3,668,728	+		IAI47_17320	0.16	-0.7
3,668,729	-		IAI47_17320	0.16	-0.2
3,668,729	-		IAI47_17320	0.16	-0.0
3,668,764	+		IAI47_17320	0.19	-1.3
3,668,764	+		IAI47_17320	0.19	-0.0
3,668,764	+		IAI47_17320	0.19	-0.6
3,668,765	-		IAI47_17320	0.19	+0.8
3,668,765	-		IAI47_17320	0.19	-2.1
3,668,765	-		IAI47_17320	0.19	+1.7
3,668,789	+		IAI47_17320	0.20	-1.9
3,668,882	+		IAI47_17320	0.27	+0.4
3,668,882	+		IAI47_17320	0.27	+1.4
3,668,882	+		IAI47_17320	0.27	-1.1
3,668,882	+		IAI47_17320	0.27	-0.1
3,668,882	+		IAI47_17320	0.27	+0.2
3,668,882	+		IAI47_17320	0.27	-2.1
3,668,882	+		IAI47_17320	0.27	-0.3
3,668,882	+		IAI47_17320	0.27	-0.1
3,668,882	+		IAI47_17320	0.27	-0.6
3,668,883	-		IAI47_17320	0.27	+1.6
3,668,883	-		IAI47_17320	0.27	+1.6
3,668,883	-		IAI47_17320	0.27	-0.1
3,668,883	-		IAI47_17320	0.27	+0.9
3,668,883	-		IAI47_17320	0.27	+0.5
3,668,883	-		IAI47_17320	0.27	+1.3
3,668,884	+		IAI47_17320	0.27	-0.1
3,668,888	+		IAI47_17320	0.27	-0.6
3,668,888	+		IAI47_17320	0.27	-1.3
3,668,888	+		IAI47_17320	0.27	-1.3
3,668,888	+		IAI47_17320	0.27	-1.4
3,668,888	+		IAI47_17320	0.27	+0.4
3,668,889	-		IAI47_17320	0.27	-1.5
3,668,889	-		IAI47_17320	0.27	-1.4
3,668,889	-		IAI47_17320	0.27	-1.5
3,668,889	-		IAI47_17320	0.27	+0.1
3,668,926	+		IAI47_17320	0.30	-1.3
3,668,940	-		IAI47_17320	0.31	+0.4
3,668,966	+		IAI47_17320	0.33	+0.6
3,668,966	+		IAI47_17320	0.33	-0.0
3,668,966	+		IAI47_17320	0.33	-0.0
3,668,967	-		IAI47_17320	0.33	-1.4
3,668,967	-		IAI47_17320	0.33	+0.2
3,669,072	+		IAI47_17320	0.40	-0.3
3,669,072	+		IAI47_17320	0.40	+0.7
3,669,072	+		IAI47_17320	0.40	-0.7
3,669,073	-		IAI47_17320	0.40	-1.4
3,669,123	+		IAI47_17320	0.43	-1.0
3,669,123	+		IAI47_17320	0.43	-0.2
3,669,124	-		IAI47_17320	0.44	+0.2
3,669,148	+		IAI47_17320	0.45	-0.9
3,669,148	+		IAI47_17320	0.45	+0.8
3,669,148	+		IAI47_17320	0.45	+0.9
3,669,148	+		IAI47_17320	0.45	-0.5
3,669,149	-		IAI47_17320	0.45	-0.6
3,669,218	-		IAI47_17320	0.50	+1.1
3,669,231	-		IAI47_17320	0.51	-0.4
3,669,246	+		IAI47_17320	0.52	+1.5
3,669,246	+		IAI47_17320	0.52	+1.3
3,669,247	-		IAI47_17320	0.52	-1.7
3,669,279	+		IAI47_17320	0.54	-0.6
3,669,279	+		IAI47_17320	0.54	-1.7
3,669,279	+		IAI47_17320	0.54	+0.4
3,669,280	-		IAI47_17320	0.54	-0.9
3,669,280	-		IAI47_17320	0.54	-0.1
3,669,280	-		IAI47_17320	0.54	-1.5
3,669,326	+		IAI47_17320	0.58	+0.9
3,669,326	+		IAI47_17320	0.58	+0.3
3,669,326	+		IAI47_17320	0.58	-1.2
3,669,327	-		IAI47_17320	0.58	+0.5
3,669,432	+		IAI47_17320	0.65	-0.4
3,669,521	-		IAI47_17320	0.71	+0.6
3,669,598	+		IAI47_17320	0.77	+0.3
3,669,598	+		IAI47_17320	0.77	-1.0
3,669,647	+		IAI47_17320	0.80	+0.9
3,669,647	+		IAI47_17320	0.80	-0.3
3,669,647	+		IAI47_17320	0.80	-1.9
3,669,647	+		IAI47_17320	0.80	-1.0
3,669,648	-		IAI47_17320	0.80	-1.0
3,669,648	-		IAI47_17320	0.80	+0.1
3,669,648	-		IAI47_17320	0.80	-0.2
3,669,648	-		IAI47_17320	0.80	+2.2
3,669,680	-		IAI47_17320	0.82	-0.4
3,669,707	+		IAI47_17320	0.84	+0.2
3,669,707	+		IAI47_17320	0.84	+0.8
3,669,707	+		IAI47_17320	0.84	-0.1
3,669,707	+		IAI47_17320	0.84	-1.7
3,669,707	+		IAI47_17320	0.84	-1.0
3,669,707	+		IAI47_17320	0.84	-1.0
3,669,708	-		IAI47_17320	0.84	-1.3
3,669,708	-		IAI47_17320	0.84	-1.7
3,669,708	-		IAI47_17320	0.84	+1.3
3,669,708	-		IAI47_17320	0.84	+0.5
3,669,715	+		IAI47_17320	0.85	+0.1
3,669,716	-		IAI47_17320	0.85	+0.6
3,669,716	-		IAI47_17320	0.85	-0.1
3,669,728	-		IAI47_17320	0.86	+1.3
3,669,737	+		IAI47_17320	0.86	+0.1
3,669,737	+		IAI47_17320	0.86	-0.6
3,669,737	+		IAI47_17320	0.86	+3.0
3,669,737	+		IAI47_17320	0.86	-0.6
3,669,737	+		IAI47_17320	0.86	-0.3
3,669,738	-		IAI47_17320	0.86	-0.7
3,669,738	-		IAI47_17320	0.86	-0.8
3,669,738	-		IAI47_17320	0.86	-0.1
3,669,738	-		IAI47_17320	0.86	-0.5
3,669,738	-		IAI47_17320	0.86	-0.7
3,669,749	+		IAI47_17320	0.87	-1.6
3,669,749	+		IAI47_17320	0.87	+1.1
3,669,749	+		IAI47_17320	0.87	-0.1
3,669,750	-		IAI47_17320	0.87	+1.5
3,669,750	-		IAI47_17320	0.87	+1.7
3,669,803	-				+0.6
3,669,803	-				-0.8
3,669,862	+				-1.5
3,669,862	+				-0.1
3,669,862	+				+0.7
3,669,862	+				-0.2
3,669,862	+				-0.3
3,669,862	+				-0.2
3,669,863	-				-1.0
3,669,863	-				-2.1
3,669,887	+				-0.5
3,669,888	-				-1.8
3,669,896	+				+0.7
3,669,897	-				+0.4
3,669,897	-				-0.7
3,669,897	-				-0.2
3,669,897	-				-0.4
3,669,899	-				+1.2
3,669,911	+				-1.8
3,669,912	-				-1.9
3,669,912	-				-1.7
3,669,912	-				+1.2
3,669,913	+				+0.6
3,669,913	+				-2.0
3,669,913	+				-0.6
3,669,914	-				-1.0
3,669,914	-				+1.2
3,669,914	-				+1.0
3,669,914	-				+0.0
3,669,915	-				-0.1
3,669,932	+				-0.2
3,669,932	+				-0.3
3,669,932	+				+1.7
3,669,932	+				-0.8
3,669,933	-				+0.2
3,669,940	-				-0.3
3,669,940	-				-0.5
3,669,965	+				-1.1
3,669,966	-				+0.2
3,669,999	+				+0.3
3,669,999	+				+1.8
3,669,999	+				-0.2
3,670,020	-				-0.6
3,670,027	+				-0.0
3,670,027	+				-0.6
3,670,027	+				-0.5
3,670,027	+				+0.3
3,670,027	+				+0.8
3,670,027	+				-0.3
3,670,028	-				-1.0
3,670,066	+				+0.1
3,670,259	+		IAI47_17325	0.16	+1.7
3,670,259	+		IAI47_17325	0.16	-1.0
3,670,259	+		IAI47_17325	0.16	+1.6
3,670,259	+		IAI47_17325	0.16	+0.5
3,670,259	+		IAI47_17325	0.16	-1.5
3,670,260	-		IAI47_17325	0.16	-1.1
3,670,260	-		IAI47_17325	0.16	-0.3
3,670,260	-		IAI47_17325	0.16	+0.2
3,670,335	-		IAI47_17325	0.22	-1.3
3,670,335	-		IAI47_17325	0.22	-0.1
3,670,335	-		IAI47_17325	0.22	-0.8
3,670,366	+		IAI47_17325	0.25	-0.1
3,670,367	-		IAI47_17325	0.25	+0.8
3,670,419	+		IAI47_17325	0.29	+0.1
3,670,420	-		IAI47_17325	0.29	-0.4
3,670,450	-		IAI47_17325	0.31	+0.8
3,670,464	+		IAI47_17325	0.32	-1.5
3,670,471	+		IAI47_17325	0.33	-0.9
3,670,471	+		IAI47_17325	0.33	+0.3
3,670,472	-		IAI47_17325	0.33	+1.3
3,670,538	+		IAI47_17325	0.38	+0.3
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3,670,539	-		IAI47_17325	0.38	-0.7
3,670,539	-		IAI47_17325	0.38	+0.6
3,670,539	-		IAI47_17325	0.38	+0.2
3,670,539	-		IAI47_17325	0.38	-1.2
3,670,539	-		IAI47_17325	0.38	+0.1
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3,670,540	+		IAI47_17325	0.38	-0.3
3,670,540	+		IAI47_17325	0.38	-0.9
3,670,540	+		IAI47_17325	0.38	-0.7
3,670,540	+		IAI47_17325	0.38	+0.8
3,670,540	+		IAI47_17325	0.38	+0.1
3,670,540	+		IAI47_17325	0.38	+1.3
3,670,541	-		IAI47_17325	0.38	-1.0
3,670,541	-		IAI47_17325	0.38	-1.2
3,670,541	-		IAI47_17325	0.38	-0.3
3,670,606	+		IAI47_17325	0.43	-2.5
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3,670,606	+		IAI47_17325	0.43	-0.4
3,670,607	-		IAI47_17325	0.43	-1.1
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3,670,644	-		IAI47_17325	0.46	+1.1
3,670,644	-		IAI47_17325	0.46	+2.8
3,670,763	+		IAI47_17325	0.55	-0.0
3,670,763	+		IAI47_17325	0.55	-0.6
3,670,763	+		IAI47_17325	0.55	-1.7
3,670,763	+		IAI47_17325	0.55	-0.2
3,670,764	-		IAI47_17325	0.55	+2.5
3,670,764	-		IAI47_17325	0.55	+0.1
3,670,764	-		IAI47_17325	0.55	-0.1
3,670,840	+		IAI47_17325	0.61	-0.3
3,670,915	+		IAI47_17325	0.67	+0.1
3,670,916	-		IAI47_17325	0.67	-0.6