Strain Fitness in Pantoea sp. MT58 around IAI47_15040

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,171,210	+		IAI47_15035	0.38	-1.8
3,171,210	+		IAI47_15035	0.38	+0.2
3,171,210	+		IAI47_15035	0.38	+0.0
3,171,210	+		IAI47_15035	0.38	-0.4
3,171,211	-		IAI47_15035	0.38	-0.6
3,171,257	+		IAI47_15035	0.42	+2.7
3,171,290	+		IAI47_15035	0.45	+0.0
3,171,290	+		IAI47_15035	0.45	-0.7
3,171,290	+		IAI47_15035	0.45	-1.4
3,171,290	+		IAI47_15035	0.45	-1.0
3,171,290	+		IAI47_15035	0.45	-0.7
3,171,291	-		IAI47_15035	0.45	-0.8
3,171,291	-		IAI47_15035	0.45	-0.1
3,171,291	-		IAI47_15035	0.45	-0.4
3,171,402	+		IAI47_15035	0.54	-0.6
3,171,402	+		IAI47_15035	0.54	-1.3
3,171,420	+		IAI47_15035	0.56	-2.1
3,171,421	-		IAI47_15035	0.56	-0.4
3,171,447	+		IAI47_15035	0.58	-2.2
3,171,448	-		IAI47_15035	0.58	-0.2
3,171,448	-		IAI47_15035	0.58	-1.3
3,171,448	-		IAI47_15035	0.58	-0.1
3,171,604	+		IAI47_15035	0.71	-1.0
3,171,604	+		IAI47_15035	0.71	-0.3
3,171,604	+		IAI47_15035	0.71	+0.9
3,171,604	+		IAI47_15035	0.71	-1.7
3,171,604	+		IAI47_15035	0.71	+1.0
3,171,604	+		IAI47_15035	0.71	+0.8
3,171,605	-		IAI47_15035	0.71	-0.1
3,171,605	-		IAI47_15035	0.71	+0.7
3,171,605	-		IAI47_15035	0.71	-0.1
3,171,605	-		IAI47_15035	0.71	-0.8
3,171,605	-		IAI47_15035	0.71	+1.9
3,171,663	+		IAI47_15035	0.76	-0.3
3,171,761	-		IAI47_15035	0.85	+1.0
3,171,799	+		IAI47_15035	0.88	-0.1
3,171,799	+		IAI47_15035	0.88	-0.5
3,171,800	-		IAI47_15035	0.88	-0.0
3,171,800	-		IAI47_15035	0.88	-2.1
3,171,800	-		IAI47_15035	0.88	-1.0
3,171,885	+				-1.0
3,171,885	+				-0.4
3,171,886	-				-1.0
3,171,886	-				+0.1
3,171,886	-				-0.9
3,171,886	-				+2.9
3,171,956	+				+3.3
3,171,957	-				+2.4
3,171,985	-				+0.2
3,171,987	+				+1.5
3,172,002	+				+1.8
3,172,002	+				+0.3
3,172,002	+				+1.2
3,172,003	-				+1.1
3,172,047	+				-0.6
3,172,047	+				-1.3
3,172,066	-				+1.0
3,172,066	-				-1.0
3,172,066	-				+0.7
3,172,066	-				+0.1
3,172,066	-				+0.6
3,172,172	+		IAI47_15040	0.17	-1.2
3,172,172	+		IAI47_15040	0.17	-0.1
3,172,173	-		IAI47_15040	0.17	+0.4
3,172,238	+		IAI47_15040	0.25	-0.6
3,172,244	-		IAI47_15040	0.25	+1.9
3,172,257	+		IAI47_15040	0.27	-1.3
3,172,258	-		IAI47_15040	0.27	+1.4
3,172,258	-		IAI47_15040	0.27	+1.1
3,172,258	-		IAI47_15040	0.27	-1.1
3,172,258	-		IAI47_15040	0.27	+2.0
3,172,653	+		IAI47_15040	0.73	+0.9
3,172,653	+		IAI47_15040	0.73	+2.6
3,172,653	+		IAI47_15040	0.73	+1.0
3,172,653	+		IAI47_15040	0.73	-0.1
3,172,653	+		IAI47_15040	0.73	+0.3
3,172,653	+		IAI47_15040	0.73	+0.3
3,172,653	+		IAI47_15040	0.73	+2.0
3,172,654	-		IAI47_15040	0.73	+0.1
3,172,654	-		IAI47_15040	0.73	-0.0
3,172,654	-		IAI47_15040	0.73	+0.7
3,172,657	+		IAI47_15040	0.73	+0.4
3,172,657	+		IAI47_15040	0.73	-0.1
3,172,657	+		IAI47_15040	0.73	+0.4
3,172,657	+		IAI47_15040	0.73	-0.4
3,172,658	-		IAI47_15040	0.73	+0.3
3,172,719	-		IAI47_15040	0.80	-1.0
3,172,719	-		IAI47_15040	0.80	+0.3
3,172,789	-		IAI47_15040	0.89	+2.0
3,172,789	-		IAI47_15040	0.89	+0.9
3,172,890	+				-1.6
3,172,891	-				+1.7
3,172,897	+				-0.7
3,172,898	-				+2.1
3,172,898	-				-0.6
3,172,898	-				+0.0
3,172,898	-				-1.7
3,172,898	-				-0.4
3,172,914	+				-0.8
3,172,915	-				-1.6
3,172,915	-				+1.4
3,172,947	+				-0.6
3,172,947	+				+0.0
3,172,947	+				+2.1
3,172,948	-				-0.1
3,172,948	-				-0.8
3,172,983	+				-0.3
3,172,983	+				+1.3
3,172,983	+				-0.1
3,173,051	+				+3.4
3,173,051	+				-0.4
3,173,051	+				+0.2
3,173,051	+				+1.8
3,173,149	+		IAI47_15045	0.12	-1.3
3,173,149	+		IAI47_15045	0.12	+0.6
3,173,149	+		IAI47_15045	0.12	+1.2
3,173,149	+		IAI47_15045	0.12	-2.0
3,173,150	-		IAI47_15045	0.12	-0.6
3,173,185	-		IAI47_15045	0.15	+0.3
3,173,227	+		IAI47_15045	0.18	+0.8
3,173,227	+		IAI47_15045	0.18	+1.0
3,173,343	+		IAI47_15045	0.26	+0.9
3,173,343	+		IAI47_15045	0.26	+1.9
3,173,361	+		IAI47_15045	0.28	-0.3
3,173,361	+		IAI47_15045	0.28	-0.0
3,173,362	-		IAI47_15045	0.28	+0.4
3,173,371	+		IAI47_15045	0.28	-0.1
3,173,371	+		IAI47_15045	0.28	-1.0
3,173,371	+		IAI47_15045	0.28	+1.5
3,173,371	+		IAI47_15045	0.28	+2.0
3,173,371	+		IAI47_15045	0.28	-0.5
3,173,372	-		IAI47_15045	0.28	+2.5
3,173,372	-		IAI47_15045	0.28	+0.5
3,173,372	-		IAI47_15045	0.28	+1.7
3,173,424	+		IAI47_15045	0.32	-0.0
3,173,424	+		IAI47_15045	0.32	+0.1
3,173,424	+		IAI47_15045	0.32	-0.2
3,173,424	+		IAI47_15045	0.32	-0.7
3,173,425	-		IAI47_15045	0.32	-1.5
3,173,425	-		IAI47_15045	0.32	+0.1
3,173,425	-		IAI47_15045	0.32	-0.1
3,173,425	-		IAI47_15045	0.32	-0.1
3,173,565	+		IAI47_15045	0.42	+0.0
3,173,565	+		IAI47_15045	0.42	-0.7
3,173,566	-		IAI47_15045	0.42	-0.0
3,173,594	+		IAI47_15045	0.44	-1.5
3,173,699	+		IAI47_15045	0.52	-0.9
3,173,700	-		IAI47_15045	0.52	-0.5
3,173,700	-		IAI47_15045	0.52	-0.1
3,173,700	-		IAI47_15045	0.52	-1.5
3,173,704	+		IAI47_15045	0.52	+0.2
3,173,704	+		IAI47_15045	0.52	+0.0
3,173,704	+		IAI47_15045	0.52	+1.0
3,173,704	+		IAI47_15045	0.52	+1.2
3,173,704	+		IAI47_15045	0.52	-1.9
3,173,705	-		IAI47_15045	0.52	+2.1
3,173,705	-		IAI47_15045	0.52	-1.1
3,173,705	-		IAI47_15045	0.52	-0.1
3,173,705	-		IAI47_15045	0.52	+0.3
3,173,785	+		IAI47_15045	0.58	+0.0
3,173,785	+		IAI47_15045	0.58	-1.0
3,173,848	+		IAI47_15045	0.63	-0.8
3,173,848	+		IAI47_15045	0.63	-0.5
3,173,848	+		IAI47_15045	0.63	+0.3
3,173,848	+		IAI47_15045	0.63	-0.6
3,173,848	+		IAI47_15045	0.63	-0.3
3,173,848	+		IAI47_15045	0.63	-1.3
3,173,848	+		IAI47_15045	0.63	-0.2
3,173,849	-		IAI47_15045	0.63	+1.9
3,173,849	-		IAI47_15045	0.63	+0.4
3,173,849	-		IAI47_15045	0.63	-0.1
3,173,882	+		IAI47_15045	0.65	-0.6
3,173,882	+		IAI47_15045	0.65	+0.6
3,173,882	+		IAI47_15045	0.65	+0.4
3,173,883	-		IAI47_15045	0.65	+0.3