Strain Fitness in Pantoea sp. MT58 around IAI47_13575

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,877,380	+		IAI47_13565	0.33	-0.8
2,877,394	-		IAI47_13565	0.35	+2.3
2,877,448	+		IAI47_13565	0.42	+1.6
2,877,448	+		IAI47_13565	0.42	+1.3
2,877,448	+		IAI47_13565	0.42	+0.5
2,877,449	-		IAI47_13565	0.42	+1.5
2,877,449	-		IAI47_13565	0.42	-1.9
2,877,449	-		IAI47_13565	0.42	+0.6
2,877,545	+		IAI47_13565	0.54	+0.4
2,877,545	+		IAI47_13565	0.54	-1.5
2,877,545	+		IAI47_13565	0.54	+0.1
2,877,598	+		IAI47_13565	0.61	-1.4
2,877,598	+		IAI47_13565	0.61	-0.7
2,877,598	+		IAI47_13565	0.61	-0.1
2,877,665	+		IAI47_13565	0.70	-1.6
2,877,665	+		IAI47_13565	0.70	+1.6
2,877,665	+		IAI47_13565	0.70	+3.0
2,877,665	+		IAI47_13565	0.70	+0.6
2,877,666	-		IAI47_13565	0.70	+0.6
2,877,666	-		IAI47_13565	0.70	-0.5
2,877,666	-		IAI47_13565	0.70	+1.3
2,877,666	-		IAI47_13565	0.70	+0.6
2,877,760	+		IAI47_13565	0.82	-0.3
2,877,760	+		IAI47_13565	0.82	-0.4
2,877,761	-		IAI47_13565	0.82	+0.5
2,877,761	-		IAI47_13565	0.82	-0.1
2,877,761	-		IAI47_13565	0.82	-0.2
2,877,761	-		IAI47_13565	0.82	-0.5
2,877,774	-		IAI47_13565	0.84	+2.5
2,877,774	-		IAI47_13565	0.84	+0.0
2,877,816	-		IAI47_13565	0.89	+0.6
2,877,816	-		IAI47_13565	0.89	-1.2
2,877,816	-		IAI47_13565	0.89	+1.5
2,877,816	-		IAI47_13565	0.89	-0.4
2,877,886	+				+0.9
2,877,887	-				-1.0
2,877,887	-				+2.4
2,877,887	-				-0.0
2,877,915	+				-1.4
2,877,915	+				+0.4
2,877,915	+				-0.5
2,877,915	+				+0.3
2,877,915	+				-1.9
2,877,915	+				+0.4
2,877,916	-				-0.1
2,877,916	-				+0.4
2,877,916	-				-0.1
2,877,916	-				-0.6
2,877,916	-				-0.7
2,877,916	-				-0.1
2,877,932	-				+0.0
2,877,934	+				-0.4
2,877,934	+				+1.5
2,877,934	+				-3.0
2,877,934	+				+0.1
2,877,934	+				-0.0
2,877,934	+				-0.3
2,877,935	-				+1.1
2,877,935	-				-0.1
2,877,935	-				+1.1
2,877,935	-				+1.6
2,877,935	-				-0.6
2,877,936	+				-0.6
2,877,936	+				-1.9
2,877,937	-				+1.0
2,877,937	-				-2.3
2,877,937	-				+1.9
2,877,937	-				-0.3
2,877,937	-				+0.6
2,877,937	-				+0.2
2,877,961	-				+0.4
2,878,003	+				-0.2
2,878,003	+				+0.2
2,878,003	+				+0.7
2,878,003	+				+0.1
2,878,003	+				+0.5
2,878,003	+				+0.9
2,878,003	+				+0.4
2,878,004	-				-1.1
2,878,004	-				+0.6
2,878,004	-				-2.4
2,878,004	-				+0.8
2,878,006	+				+0.4
2,878,006	+				+0.7
2,878,121	+		IAI47_13570	0.49	+0.1
2,878,122	-		IAI47_13570	0.49	-0.4
2,878,122	-		IAI47_13570	0.49	+0.1
2,878,122	-		IAI47_13570	0.49	+1.2
2,878,128	+		IAI47_13570	0.53	-0.4
2,878,189	+				-0.4
2,878,189	+				+2.2
2,878,189	+				-0.4
2,878,219	-				+0.9
2,878,236	-				+1.4
2,878,236	-				-0.3
2,878,277	-				+0.3
2,878,277	-				+0.3
2,878,277	-				+0.3
2,878,298	+				+0.1
2,878,299	-				-0.1
2,878,368	+				+0.2
2,878,369	-				+1.9
2,878,399	+				+1.4
2,878,400	-				-0.3
2,878,469	+		IAI47_13575	0.17	-1.3
2,878,469	+		IAI47_13575	0.17	+0.1
2,878,470	-		IAI47_13575	0.17	-0.6
2,878,470	-		IAI47_13575	0.17	+2.2
2,878,470	-		IAI47_13575	0.17	-1.3
2,878,496	+		IAI47_13575	0.20	-1.2
2,878,593	+		IAI47_13575	0.33	-0.6
2,878,593	+		IAI47_13575	0.33	+0.6
2,878,593	+		IAI47_13575	0.33	-1.9
2,878,593	+		IAI47_13575	0.33	+1.4
2,878,594	-		IAI47_13575	0.33	+1.3
2,878,594	-		IAI47_13575	0.33	-0.9
2,878,594	-		IAI47_13575	0.33	-0.9
2,878,774	+		IAI47_13575	0.56	+0.0
2,878,775	-		IAI47_13575	0.56	-1.4
2,878,775	-		IAI47_13575	0.56	-1.8
2,878,775	-		IAI47_13575	0.56	+1.4
2,878,775	-		IAI47_13575	0.56	-1.6
2,878,775	-		IAI47_13575	0.56	+0.9
2,878,775	-		IAI47_13575	0.56	-1.1
2,878,858	+		IAI47_13575	0.67	-0.8
2,878,859	-		IAI47_13575	0.67	+0.6
2,878,859	-		IAI47_13575	0.67	+0.1
2,878,859	-		IAI47_13575	0.67	-1.4
2,878,872	+		IAI47_13575	0.68	+0.4
2,878,880	-		IAI47_13575	0.69	-1.1
2,878,897	+		IAI47_13575	0.72	-1.1
2,878,897	+		IAI47_13575	0.72	+1.1
2,878,898	-		IAI47_13575	0.72	+1.0
2,878,924	+		IAI47_13575	0.75	-2.4
2,878,924	+		IAI47_13575	0.75	-0.7
2,878,924	+		IAI47_13575	0.75	-1.0
2,878,924	+		IAI47_13575	0.75	-0.5
2,878,925	-		IAI47_13575	0.75	-1.5
2,878,925	-		IAI47_13575	0.75	+1.9
2,878,925	-		IAI47_13575	0.75	+0.0
2,878,925	-		IAI47_13575	0.75	-0.1
2,879,084	-				-0.6
2,879,117	+				+0.4
2,879,117	+				+0.3
2,879,118	-				+0.4
2,879,151	+				-0.1
2,879,151	+				+0.6
2,879,151	+				-1.6
2,879,152	-				+2.1
2,879,152	-				+1.4
2,879,227	+				-0.1
2,879,227	+				-0.9
2,879,228	-				-1.0
2,879,228	-				+0.4
2,879,233	+				-1.0
2,879,233	+				-0.5
2,879,233	+				+0.6
2,879,234	-				-0.8
2,879,311	+				-2.2
2,879,311	+				-0.9
2,879,412	+		IAI47_13580	0.15	-0.3
2,879,412	+		IAI47_13580	0.15	-0.4
2,879,413	-		IAI47_13580	0.15	-0.6
2,879,413	-		IAI47_13580	0.15	-1.2
2,879,413	-		IAI47_13580	0.15	+1.1
2,879,413	-		IAI47_13580	0.15	+0.3
2,879,455	+		IAI47_13580	0.18	-0.6
2,879,455	+		IAI47_13580	0.18	+0.1
2,879,456	-		IAI47_13580	0.18	+1.9
2,879,591	+		IAI47_13580	0.27	-1.2
2,879,591	+		IAI47_13580	0.27	+0.2
2,879,821	+		IAI47_13580	0.43	+0.2
2,879,821	+		IAI47_13580	0.43	-0.1
2,879,822	-		IAI47_13580	0.43	+0.9
2,879,822	-		IAI47_13580	0.43	+1.6
2,879,822	-		IAI47_13580	0.43	+0.5
2,879,822	-		IAI47_13580	0.43	+0.9
2,879,822	-		IAI47_13580	0.43	-1.1
2,879,822	-		IAI47_13580	0.43	+1.3
2,879,856	+		IAI47_13580	0.45	-0.0
2,879,856	+		IAI47_13580	0.45	+0.4
2,879,940	+		IAI47_13580	0.51	+1.9
2,879,941	-		IAI47_13580	0.51	-0.4
2,879,971	+		IAI47_13580	0.53	-0.4
2,879,972	-		IAI47_13580	0.53	+0.2
2,879,972	-		IAI47_13580	0.53	-0.5
2,879,996	+		IAI47_13580	0.55	-0.8
2,879,996	+		IAI47_13580	0.55	+0.3
2,879,996	+		IAI47_13580	0.55	-1.6
2,879,996	+		IAI47_13580	0.55	+2.8
2,879,997	-		IAI47_13580	0.55	+0.6
2,879,997	-		IAI47_13580	0.55	+1.2
2,879,997	-		IAI47_13580	0.55	-1.3
2,879,997	-		IAI47_13580	0.55	+0.3
2,879,997	-		IAI47_13580	0.55	+1.4
2,879,997	-		IAI47_13580	0.55	+0.2
2,879,997	-		IAI47_13580	0.55	-0.4
2,879,997	-		IAI47_13580	0.55	-0.3